Wall clock time and date at job start Tue Mar 31 2020 06:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47125 * 2 1 4 4 C 1.53005 * 109.47085 * 120.00118 * 2 1 3 5 5 C 1.52998 * 115.55092 * 174.67938 * 4 2 1 6 6 N 1.46506 * 109.47111 * 295.20178 * 5 4 2 7 7 S 1.65597 * 120.00149 * 163.95119 * 6 5 4 8 8 O 1.42103 * 104.27716 * 181.07475 * 7 6 5 9 9 O 1.42105 * 104.27442 * 308.92568 * 7 6 5 10 10 C 1.81391 * 104.45010 * 64.99717 * 7 6 5 11 11 C 1.52996 * 109.47108 * 179.97438 * 10 7 6 12 12 C 1.53005 * 109.47231 * 179.97438 * 11 10 7 13 13 C 1.50697 * 109.47193 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00408 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31509 * 119.99726 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00030 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47392 * 59.99414 * 17 15 13 19 19 H 1.48496 * 109.47153 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46926 * 299.99624 * 17 15 13 21 21 C 1.52996 * 117.50049 * 29.00633 * 4 2 1 22 22 C 1.53000 * 117.49928 * 320.34697 * 4 2 1 23 23 H 1.08998 * 109.46907 * 60.50775 * 1 2 3 24 24 H 1.09004 * 109.47111 * 300.50634 * 1 2 3 25 25 H 1.09004 * 109.47033 * 180.50846 * 1 2 3 26 26 H 1.08997 * 109.47330 * 240.00394 * 2 1 3 27 27 H 1.09000 * 109.47377 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.47544 * 300.00407 * 3 2 1 29 29 H 1.09007 * 109.47085 * 59.99638 * 3 2 1 30 30 H 1.09008 * 109.47056 * 55.19589 * 5 4 2 31 31 H 1.08990 * 109.47280 * 175.20231 * 5 4 2 32 32 H 0.97000 * 119.99692 * 343.95638 * 6 5 4 33 33 H 1.08994 * 109.47416 * 299.99879 * 10 7 6 34 34 H 1.09002 * 109.47080 * 59.99936 * 10 7 6 35 35 H 1.09000 * 109.47528 * 300.00289 * 11 10 7 36 36 H 1.09001 * 109.47091 * 60.00692 * 11 10 7 37 37 H 1.09000 * 109.47216 * 300.00621 * 12 11 10 38 38 H 1.09001 * 109.46403 * 60.00411 * 12 11 10 39 39 H 0.97009 * 120.00080 * 179.97438 * 16 15 13 40 40 H 1.09001 * 117.49518 * 0.02562 * 21 4 2 41 41 H 1.08993 * 117.49852 * 145.01772 * 21 4 2 42 42 H 1.09001 * 117.50190 * 214.98304 * 22 4 2 43 43 H 1.09006 * 117.49676 * 359.97438 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5558 -0.9142 1.3273 6 7 3.9916 -1.8008 0.2455 7 16 5.5933 -1.8773 -0.1679 8 8 5.6328 -2.8000 -1.2479 9 8 5.9735 -0.5202 -0.3495 10 6 6.4057 -2.5756 1.2959 11 6 7.9084 -2.6982 1.0354 12 6 8.5938 -3.2866 2.2704 13 6 10.0737 -3.4079 2.0135 14 1 10.4846 -3.0962 1.0646 15 6 10.9034 -3.9170 2.9900 16 7 10.4033 -4.2961 4.1457 17 14 12.7381 -4.0668 2.6719 18 1 13.3023 -2.7232 2.3863 19 1 13.4032 -4.6379 3.8705 20 1 12.9672 -4.9579 1.5063 21 6 1.1565 -1.8220 1.8397 22 6 1.2904 -0.4785 2.5607 23 1 -0.3633 0.5059 -0.8945 24 1 -0.3633 0.5217 0.8854 25 1 -0.3633 -1.0277 0.0091 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 4.0506 0.0519 1.2268 31 1 3.8166 -1.3579 2.2881 32 1 3.3419 -2.3430 -0.2286 33 1 6.2372 -1.9218 2.1516 34 1 5.9919 -3.5620 1.5053 35 1 8.0767 -3.3522 0.1798 36 1 8.3225 -1.7119 0.8259 37 1 8.4255 -2.6322 3.1257 38 1 8.1797 -4.2728 2.4803 39 1 10.9870 -4.6546 4.8327 40 1 0.2121 -2.0327 1.3378 41 1 1.6551 -2.6834 2.2839 42 1 1.8770 -0.4565 3.4792 43 1 0.4341 0.1955 2.5336 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175831521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:41 Heat of formation + Delta-G solvation = -78.383273 kcal Electronic energy + Delta-G solvation = -21383.984095 eV Core-core repulsion = 18170.184610 eV Total energy + Delta-G solvation = -3213.799485 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.59438 -36.86229 -35.73428 -34.66698 -34.52721 -33.12482 -32.18593 -27.93235 -27.80497 -26.11477 -23.73723 -23.11135 -22.51054 -20.65386 -19.15770 -18.73842 -17.47288 -16.79504 -16.53255 -15.87963 -15.72969 -15.07062 -14.80755 -14.49555 -14.44654 -13.99954 -13.61047 -13.12598 -12.92015 -12.57787 -12.32405 -12.26462 -12.10954 -11.92899 -11.89392 -11.79171 -11.75705 -11.32162 -11.27268 -11.22173 -10.90095 -10.87894 -10.85649 -10.48555 -10.35967 -10.00138 -9.94670 -9.64456 -9.31330 -9.07737 -8.40602 -6.05770 -4.08880 0.48676 2.83451 3.32198 3.35983 3.39254 3.51858 3.96961 4.28455 4.37248 4.42338 4.44721 4.53916 4.65834 4.86925 5.03154 5.06442 5.20021 5.21200 5.26716 5.30757 5.35668 5.43514 5.52815 5.56022 5.62899 5.68259 5.79170 5.80831 5.88632 5.89981 5.98355 6.10729 6.15573 6.27174 6.45135 6.87010 6.95298 7.56533 7.66746 7.92150 8.32770 8.97154 9.55788 11.05442 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029861 B = 0.003161 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.461877 B = 8855.071417 C = 9277.904373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.059 4.059 3 C -0.149 4.149 4 C -0.128 4.128 5 C 0.151 3.849 6 N -1.121 6.121 7 S 2.601 3.399 8 O -0.964 6.964 9 O -0.962 6.962 10 C -0.609 4.609 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.175 4.175 22 C -0.166 4.166 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.903 7.771 -4.420 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.206 4.206 4 C -0.130 4.130 5 C 0.025 3.975 6 N -0.879 5.879 7 S 2.697 3.303 8 O -0.955 6.955 9 O -0.952 6.952 10 C -0.741 4.741 11 C -0.146 4.146 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.212 4.212 22 C -0.204 4.204 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.371 8.110 -4.995 23.398 hybrid contribution 0.637 -0.677 0.519 1.065 sum -20.734 7.433 -4.476 22.477 Atomic orbital electron populations 1.22015 0.95314 1.01835 1.01854 1.20545 0.95077 0.96047 0.96041 1.21839 1.01963 0.95284 1.01542 1.21623 0.92585 1.03325 0.95447 1.20809 0.93029 0.94308 0.89397 1.55639 1.26973 1.56306 1.48968 1.05263 0.73215 0.74969 0.76859 1.93577 1.85320 1.65686 1.50876 1.93564 1.81957 1.34352 1.85339 1.30547 1.10693 1.13091 1.19787 1.21500 0.87546 1.02237 1.03268 1.19055 0.94710 0.96075 0.90882 1.21224 0.92487 1.42269 1.00568 0.92412 1.25018 0.98988 0.95280 0.95065 1.69947 1.35576 1.42817 1.05132 0.86611 0.84996 0.78525 0.77632 1.20107 1.21244 1.20109 1.23193 1.01569 0.92719 1.03709 1.23072 1.02589 0.99679 0.95056 0.92607 0.92411 0.92333 0.90571 0.91835 0.92743 0.92623 0.89595 0.91585 0.75140 0.85595 0.85331 0.91583 0.91570 0.96146 0.96152 0.92839 0.88250 0.88532 0.88510 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.24 37.16 0.31 -0.70 16 2 C -0.06 -0.47 2.94 -90.62 -0.27 -0.74 16 3 C -0.15 -1.25 9.03 37.16 0.34 -0.92 16 4 C -0.13 -1.03 1.56 -154.51 -0.24 -1.27 16 5 C 0.15 1.44 5.80 -4.04 -0.02 1.41 16 6 N -1.12 -11.90 5.70 -10.61 -0.06 -11.96 16 7 S 2.60 37.83 5.46 -107.50 -0.59 37.24 16 8 O -0.96 -16.95 18.08 -57.54 -1.04 -17.99 16 9 O -0.96 -16.73 17.48 -57.54 -1.01 -17.73 16 10 C -0.61 -9.32 6.07 37.16 0.23 -9.09 16 11 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 12 C 0.03 0.79 4.97 -27.88 -0.14 0.65 16 13 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 14 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.18 -1.24 9.53 -26.70 -0.25 -1.49 16 22 C -0.17 -1.15 9.56 -26.69 -0.26 -1.41 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.35 6.41 -51.93 -0.33 0.02 16 25 H 0.06 0.36 6.27 -51.93 -0.33 0.03 16 26 H 0.08 0.67 8.04 -51.93 -0.42 0.25 16 27 H 0.06 0.62 7.00 -51.93 -0.36 0.26 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.09 0.88 6.52 -51.92 -0.34 0.54 16 31 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.41 3.78 8.62 -34.47 -0.30 3.48 16 33 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.10 0.63 6.06 -51.93 -0.31 0.31 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.10 0.61 6.46 -51.93 -0.34 0.28 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -34.24 357.39 -9.79 -44.03 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.34 Total: -0.19 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: -0.86 Total: -29.50 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.68 Total: -37.86 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -2.05 Total: -35.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 37.83 SS G_CDS: -0.59 Total: 37.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.24 -9.79 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175831521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.357 kcal (2) G-P(sol) polarization free energy of solvation -34.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds