Wall clock time and date at job start Tue Mar 31 2020 07:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47236 * 2 1 4 4 C 1.53001 * 109.47065 * 239.99516 * 2 1 3 5 5 C 1.50707 * 109.47016 * 120.00221 * 2 1 3 6 6 O 1.20763 * 119.99791 * 359.97438 * 5 2 1 7 7 C 1.50691 * 119.99974 * 180.02562 * 5 2 1 8 8 N 1.46498 * 109.47218 * 179.97438 * 7 5 2 9 9 C 1.34782 * 120.00041 * 179.97438 * 8 7 5 10 10 O 1.21546 * 119.99859 * 359.97438 * 9 8 7 11 11 C 1.47891 * 119.99867 * 179.97438 * 9 8 7 12 12 C 1.39923 * 120.02411 * 359.72358 * 11 9 8 13 13 C 1.38333 * 120.35611 * 179.74075 * 12 11 9 14 14 C 1.37755 * 120.40861 * 0.56181 * 13 12 11 15 15 C 1.40744 * 120.04191 * 359.69635 * 14 13 12 16 16 C 1.41438 * 120.17967 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99591 * 24.43812 * 16 15 14 18 18 C 1.39935 * 120.00120 * 204.44034 * 16 15 14 19 19 N 1.30820 * 120.00060 * 17.87513 * 18 16 15 20 20 Si 1.86798 * 119.99804 * 197.88047 * 18 16 15 21 21 H 1.48502 * 109.47323 * 59.99884 * 20 18 16 22 22 H 1.48496 * 109.47340 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46963 * 299.99731 * 20 18 16 24 24 C 1.38991 * 120.02263 * 179.97438 * 11 9 8 25 25 H 1.09002 * 109.47349 * 300.00327 * 1 2 3 26 26 H 1.08999 * 109.47348 * 59.99891 * 1 2 3 27 27 H 1.09000 * 109.47385 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47513 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47259 * 299.99657 * 3 2 1 30 30 H 1.09001 * 109.47110 * 60.00136 * 3 2 1 31 31 H 1.08990 * 109.47232 * 300.00138 * 4 2 1 32 32 H 1.09001 * 109.46492 * 60.00637 * 4 2 1 33 33 H 1.09000 * 109.46741 * 179.97438 * 4 2 1 34 34 H 1.09006 * 109.47299 * 299.99393 * 7 5 2 35 35 H 1.09004 * 109.47536 * 59.99488 * 7 5 2 36 36 H 0.97000 * 120.00134 * 359.97438 * 8 7 5 37 37 H 1.08001 * 119.81786 * 0.02562 * 12 11 9 38 38 H 1.07999 * 119.78886 * 180.28122 * 13 12 11 39 39 H 1.07995 * 119.97665 * 179.72109 * 14 13 12 40 40 H 0.97000 * 119.99984 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.20608 * 359.95800 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2475 -1.1690 2.0256 7 6 3.5138 -0.8477 1.4693 8 7 3.7415 -1.5709 2.7228 9 6 4.9994 -1.8130 3.1422 10 8 5.9447 -1.4317 2.4802 11 6 5.2292 -2.5426 4.4079 12 6 4.1413 -2.9767 5.1733 13 6 4.3483 -3.6644 6.3556 14 6 5.6273 -3.9197 6.7990 15 6 6.7340 -3.4861 6.0452 16 6 8.0485 -3.7472 6.4974 17 1 8.2358 -4.5770 7.1628 18 6 9.1063 -2.9303 6.0827 19 7 8.8612 -1.7476 5.5802 20 14 10.8682 -3.5287 6.2466 21 1 11.0441 -4.7728 5.4550 22 1 11.7947 -2.4849 5.7395 23 1 11.1665 -3.8044 7.6749 24 6 6.5261 -2.7930 4.8406 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2491 32 1 1.6766 -0.2075 -2.1392 33 1 3.1299 -0.7209 -1.2494 34 1 3.9653 -1.3988 0.6443 35 1 3.9647 0.1426 1.5345 36 1 2.9871 -1.8755 3.2509 37 1 3.1345 -2.7777 4.8369 38 1 3.5019 -3.9991 6.9369 39 1 5.7809 -4.4532 7.7253 40 1 9.5944 -1.1815 5.2925 41 1 7.3688 -2.4569 4.2548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179093196.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:47 Heat of formation + Delta-G solvation = -71.904442 kcal Electronic energy + Delta-G solvation = -22315.680296 eV Core-core repulsion = 18966.717803 eV Total energy + Delta-G solvation = -3348.962493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45990 -38.93890 -36.98355 -36.05200 -34.13912 -33.65590 -30.46069 -29.43864 -28.43029 -27.67891 -27.03057 -25.26659 -23.32605 -21.83951 -20.91741 -19.75767 -18.63835 -17.70381 -16.58214 -16.31136 -15.70802 -15.37039 -15.20699 -14.75497 -14.57511 -14.33026 -13.95970 -13.62554 -13.45442 -13.16483 -12.65736 -12.56915 -12.55502 -12.46796 -12.38284 -12.33068 -11.99379 -11.63373 -11.27883 -11.19750 -11.14650 -11.07133 -10.73832 -10.49998 -10.04522 -9.75055 -9.66983 -9.20410 -9.07040 -8.77777 -7.62994 -7.51072 -6.79506 -4.40586 1.71051 2.19813 2.82980 3.07786 3.09553 3.17483 3.34432 3.83987 3.91871 3.92715 4.36830 4.51781 4.61191 4.64007 5.12203 5.25833 5.28690 5.33761 5.36184 5.43897 5.50718 5.53915 5.61764 5.62009 5.78123 5.80269 5.90633 5.95640 6.11665 6.31390 6.71845 6.73796 6.98875 7.02132 7.21549 7.24607 7.38868 7.70809 7.76157 7.93103 8.07017 8.18938 8.50699 8.80384 8.83775 8.89566 10.15298 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026483 B = 0.003390 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.022435 B = 8257.076739 C = 9048.244493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.360 3.640 6 O -0.444 6.444 7 C 0.070 3.930 8 N -0.733 5.733 9 C 0.567 3.433 10 O -0.547 6.547 11 C -0.129 4.129 12 C -0.216 4.216 13 C -0.097 4.097 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.074 3.926 19 N -0.784 5.784 20 Si 0.911 3.089 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.265 1.265 24 C -0.091 4.091 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.408 0.592 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.285 0.715 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 4.552 -11.264 16.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.235 3.765 6 O -0.316 6.316 7 C -0.055 4.055 8 N -0.390 5.390 9 C 0.358 3.642 10 O -0.425 6.425 11 C -0.132 4.132 12 C -0.237 4.237 13 C -0.116 4.116 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.408 5.408 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.190 1.190 24 C -0.111 4.111 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.246 0.754 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.803 4.811 -11.401 16.426 hybrid contribution 0.410 -0.209 0.285 0.541 sum -10.393 4.602 -11.116 15.899 Atomic orbital electron populations 1.21722 0.92382 1.02763 1.02216 1.21144 0.97906 0.97274 0.94937 1.21882 1.01955 0.93138 1.02944 1.21879 1.01935 1.00419 0.95660 1.24811 0.90779 0.75279 0.85679 1.90382 1.58678 1.38198 1.44320 1.21589 0.94508 0.99727 0.89688 1.45809 1.09439 1.59901 1.23865 1.18868 0.81379 0.78238 0.85743 1.90690 1.41890 1.52513 1.57375 1.19423 0.95476 1.03924 0.94373 1.20397 0.95528 1.08812 0.98914 1.20444 0.96089 0.99159 0.95875 1.21110 0.92315 1.09264 1.00379 1.17591 0.92928 0.89882 0.90024 1.19554 0.91231 1.12240 1.25925 0.90099 1.25961 1.01966 0.93760 0.92879 1.69782 1.35215 1.06508 1.29302 0.86320 0.80869 0.79634 0.79664 1.18729 1.20230 1.18978 1.21632 0.94319 0.99299 0.95878 0.92014 0.91887 0.92023 0.91341 0.91190 0.92024 0.92040 0.91198 0.91357 0.88253 0.88223 0.75388 0.89093 0.88830 0.88571 0.90401 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.11 7.76 37.15 0.29 -0.82 16 2 C -0.11 -0.96 0.87 -155.66 -0.14 -1.09 16 3 C -0.14 -1.03 8.25 37.15 0.31 -0.73 16 4 C -0.14 -1.01 8.26 37.16 0.31 -0.71 16 5 C 0.36 4.31 6.04 -29.04 -0.18 4.14 16 6 O -0.44 -6.53 15.29 6.00 0.09 -6.44 16 7 C 0.07 0.95 5.43 -5.20 -0.03 0.93 16 8 N -0.73 -12.95 5.48 -62.42 -0.34 -13.29 16 9 C 0.57 12.61 7.77 -12.31 -0.10 12.52 16 10 O -0.55 -13.51 16.33 5.33 0.09 -13.43 16 11 C -0.13 -3.12 5.87 -105.04 -0.62 -3.73 16 12 C -0.22 -4.76 9.55 -38.92 -0.37 -5.13 16 13 C -0.10 -2.14 10.01 -39.72 -0.40 -2.54 16 14 C -0.21 -5.09 9.78 -38.81 -0.38 -5.47 16 15 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 16 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 17 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 19 N -0.78 -20.77 10.96 55.55 0.61 -20.17 16 20 Si 0.91 18.79 29.59 -169.99 -5.03 13.76 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 25 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 28 H 0.07 0.49 7.28 -51.93 -0.38 0.11 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.47 7.29 -51.93 -0.38 0.10 16 34 H 0.10 1.27 7.38 -51.93 -0.38 0.89 16 35 H 0.10 1.30 7.38 -51.93 -0.38 0.92 16 36 H 0.41 6.96 5.46 -40.82 -0.22 6.74 16 37 H 0.09 1.74 6.38 -52.49 -0.33 1.41 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 41 H 0.13 3.87 5.74 -52.49 -0.30 3.57 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -30.55 342.69 -7.79 -38.34 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -5.73 Total: 10.17 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -2.64 Total: -14.12 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.27 Total: -33.46 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.18 Total: -19.86 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.55 -7.79 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179093196.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.561 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds