Wall clock time and date at job start Tue Mar 31 2020 07:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47055 * 2 1 4 4 C 1.52999 * 109.47059 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47402 * 180.02562 * 4 3 2 6 6 S 1.81397 * 109.47293 * 179.97438 * 5 4 3 7 7 O 1.42105 * 110.54189 * 68.37430 * 6 5 4 8 8 O 1.42099 * 110.54203 * 291.62169 * 6 5 4 9 9 N 1.65608 * 104.44917 * 179.97438 * 6 5 4 10 10 C 1.46494 * 119.99583 * 90.00089 * 9 6 5 11 11 C 1.50703 * 109.47225 * 95.00259 * 10 9 6 12 12 H 1.07996 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99597 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00371 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47175 * 89.99893 * 15 13 11 17 17 H 1.48496 * 109.47237 * 209.99970 * 15 13 11 18 18 H 1.48502 * 109.46952 * 330.00114 * 15 13 11 19 19 C 1.46493 * 119.99916 * 269.72772 * 9 6 5 20 20 C 1.52997 * 109.47398 * 95.00006 * 19 9 6 21 21 C 1.53005 * 117.49989 * 243.61967 * 20 19 9 22 22 C 1.52997 * 60.00061 * 252.50806 * 21 20 19 23 23 H 1.08998 * 109.47352 * 60.00509 * 1 2 3 24 24 H 1.09009 * 109.47475 * 180.02562 * 1 2 3 25 25 H 1.09009 * 109.47246 * 299.99975 * 1 2 3 26 26 H 1.09000 * 109.46719 * 239.99403 * 2 1 3 27 27 H 1.09001 * 109.47143 * 119.99962 * 2 1 3 28 28 H 1.08996 * 109.47359 * 60.00128 * 3 2 1 29 29 H 1.09001 * 109.47114 * 299.99980 * 3 2 1 30 30 H 1.09001 * 109.47713 * 59.99541 * 4 3 2 31 31 H 1.09001 * 109.46817 * 299.99765 * 4 3 2 32 32 H 1.09001 * 109.47069 * 59.99138 * 5 4 3 33 33 H 1.09001 * 109.46935 * 299.99683 * 5 4 3 34 34 H 1.09005 * 109.47101 * 215.00381 * 10 9 6 35 35 H 1.09001 * 109.47746 * 334.99625 * 10 9 6 36 36 H 0.97008 * 119.99656 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46868 * 214.99641 * 19 9 6 38 38 H 1.09004 * 109.47439 * 334.99764 * 19 9 6 39 39 H 1.08997 * 115.54840 * 29.32534 * 20 19 9 40 40 H 1.09002 * 117.49693 * 0.02562 * 21 20 19 41 41 H 1.09000 * 117.49634 * 145.01940 * 21 20 19 42 42 H 1.09001 * 117.50089 * 252.51283 * 22 21 20 43 43 H 1.09003 * 117.50184 * 107.48619 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0800 2.8849 0.0000 6 16 5.8940 2.8849 0.0000 7 8 6.3926 2.3950 -1.2373 8 8 6.3926 2.3940 1.2368 9 7 6.3072 4.4886 0.0000 10 6 6.4900 5.1978 1.2687 11 6 7.9501 5.1917 1.6418 12 1 8.6698 4.7076 0.9985 13 6 8.3670 5.8042 2.8046 14 7 9.6412 5.7984 3.1304 15 14 7.1223 6.6422 3.9171 16 1 6.6085 5.6646 4.9099 17 1 7.7743 7.7720 4.6267 18 1 5.9945 7.1562 3.0991 19 6 6.4958 5.1963 -1.2687 20 6 5.1969 5.9069 -1.6544 21 6 4.4989 5.4549 -2.9387 22 6 5.2228 6.8021 -2.8949 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8932 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6766 1.9563 -0.8900 30 1 3.9330 0.9287 -0.8908 31 1 3.9336 0.9285 0.8892 32 1 3.7169 3.3983 0.8904 33 1 3.7163 3.3993 -0.8896 34 1 6.1464 6.2268 1.1626 35 1 5.9135 4.7010 2.0491 36 1 9.9346 6.2297 3.9483 37 1 7.2934 5.9313 -1.1596 38 1 6.7641 4.4819 -2.0470 39 1 4.5666 6.2188 -0.8216 40 1 4.9649 4.6511 -3.5087 41 1 3.4091 5.4693 -2.9510 42 1 4.6092 7.7029 -2.8783 43 1 6.1653 6.8850 -3.4361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181407483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:47 Heat of formation + Delta-G solvation = -89.642980 kcal Electronic energy + Delta-G solvation = -22018.750901 eV Core-core repulsion = 18804.463158 eV Total energy + Delta-G solvation = -3214.287742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.90577 -38.10338 -37.22861 -36.91564 -36.38344 -34.39015 -33.23276 -30.20249 -27.96959 -27.08810 -24.05719 -23.29572 -23.11066 -21.96988 -21.37941 -19.73212 -19.02137 -18.58161 -17.50236 -17.30786 -16.79891 -16.21827 -16.00702 -15.49734 -15.18848 -14.88115 -14.66248 -14.49124 -14.39299 -14.04812 -13.55853 -13.34436 -13.21373 -13.05456 -12.95330 -12.92484 -12.86420 -12.47730 -12.42595 -12.25999 -12.18310 -12.00350 -11.98127 -11.85648 -11.70679 -11.40779 -11.29646 -11.14830 -10.77912 -10.72633 -9.68813 -8.26792 -6.32072 -0.64978 1.36884 1.41920 1.49990 1.77923 2.37177 2.95803 2.99723 3.07023 3.23679 3.54730 3.80904 3.89731 3.97743 4.01879 4.10557 4.21016 4.32377 4.34741 4.43037 4.51117 4.54477 4.78532 4.81209 4.85277 4.86802 4.90293 4.97941 4.99997 5.01819 5.10559 5.13902 5.30716 5.32568 5.36046 5.40555 5.44063 5.50046 5.51563 5.80041 6.33724 6.70624 7.30177 8.91446 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.005445 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.933947 B = 5141.436184 C = 6109.168965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.134 4.134 3 C -0.106 4.106 4 C -0.123 4.123 5 C -0.597 4.597 6 S 2.585 3.415 7 O -0.997 6.997 8 O -0.996 6.996 9 N -0.986 5.986 10 C 0.234 3.766 11 C -0.539 4.539 12 H 0.021 0.979 13 C 0.002 3.998 14 N -0.953 5.953 15 Si 0.946 3.054 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.224 1.224 19 C 0.147 3.853 20 C -0.190 4.190 21 C -0.177 4.177 22 C -0.167 4.167 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.161 0.839 34 H 0.058 0.942 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.081 -3.072 -10.009 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.171 4.171 3 C -0.145 4.145 4 C -0.163 4.163 5 C -0.731 4.731 6 S 2.685 3.315 7 O -0.987 6.987 8 O -0.987 6.987 9 N -0.821 5.821 10 C 0.109 3.891 11 C -0.578 4.578 12 H 0.039 0.961 13 C -0.195 4.195 14 N -0.594 5.594 15 Si 0.767 3.233 16 H -0.193 1.193 17 H -0.206 1.206 18 H -0.146 1.146 19 C 0.021 3.979 20 C -0.210 4.210 21 C -0.214 4.214 22 C -0.204 4.204 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.169 0.831 33 H 0.179 0.821 34 H 0.075 0.925 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.280 -3.715 -9.888 23.757 hybrid contribution 0.314 0.544 0.807 1.023 sum -20.966 -3.172 -9.080 23.067 Atomic orbital electron populations 1.21763 0.94867 1.02050 1.02179 1.21620 0.96768 0.96390 1.02367 1.21568 0.91575 0.97763 1.03604 1.21525 0.99686 0.91427 1.03613 1.30451 1.21648 1.06903 1.14060 1.05444 0.80151 0.73124 0.72800 1.93464 1.79782 1.79387 1.46092 1.93564 1.79394 1.79316 1.46409 1.57047 1.84111 1.29032 1.11939 1.19213 0.94515 0.94225 0.81120 1.21722 0.93892 1.35092 1.07143 0.96067 1.26000 0.97534 0.96728 0.99193 1.70095 1.17366 1.46069 1.25826 0.85758 0.79886 0.78405 0.79252 1.19324 1.20646 1.14636 1.20871 0.96818 0.96221 0.83973 1.22847 0.99329 1.05364 0.93417 1.23246 1.00648 0.98343 0.99152 1.22991 1.02895 0.94929 0.99610 0.92173 0.92336 0.92564 0.91621 0.92140 0.90891 0.90167 0.90168 0.91032 0.83074 0.82058 0.92461 0.94366 0.92469 0.91355 0.90120 0.86460 0.88801 0.86542 0.87106 0.88852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.92 5.93 30.59 0.18 -1.74 16 3 C -0.11 -1.62 5.21 30.59 0.16 -1.46 16 4 C -0.12 -2.55 5.22 30.59 0.16 -2.39 16 5 C -0.60 -13.53 6.18 71.98 0.44 -13.08 16 6 S 2.59 97.10 5.37 -56.49 -0.30 96.80 16 7 O -1.00 -40.87 16.52 -127.65 -2.11 -42.98 16 8 O -1.00 -47.95 16.99 -127.65 -2.17 -50.12 16 9 N -0.99 -38.93 2.70 -519.86 -1.40 -40.34 16 10 C 0.23 10.67 4.08 85.64 0.35 11.02 16 11 C -0.54 -32.04 9.94 25.60 0.25 -31.79 16 12 H 0.02 1.44 8.06 -2.91 -0.02 1.42 16 13 C 0.00 0.14 5.47 84.66 0.46 0.61 16 14 N -0.95 -61.61 13.96 21.45 0.30 -61.31 16 15 Si 0.95 42.80 27.47 68.60 1.88 44.69 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.22 -8.60 6.54 99.48 0.65 -7.95 16 19 C 0.15 5.00 5.94 86.38 0.51 5.51 16 20 C -0.19 -4.62 6.01 -10.79 -0.06 -4.68 16 21 C -0.18 -3.31 10.18 30.59 0.31 -3.00 16 22 C -0.17 -3.29 10.25 30.59 0.31 -2.98 16 23 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.15 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.06 2.35 7.17 -2.38 -0.02 2.34 16 35 H 0.04 1.68 7.04 -2.39 -0.02 1.66 16 36 H 0.27 15.96 8.31 -92.70 -0.77 15.19 16 37 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 38 H 0.08 2.74 6.54 -2.39 -0.02 2.73 16 39 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.09 1.85 8.03 -2.39 -0.02 1.83 16 41 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -80.12 363.47 0.89 -79.23 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.89 Total: 19.09 kcal Atomic # 6 Polarization: -48.87 SS G_CDS: 3.80 Total: -45.07 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -1.10 Total: -101.65 kcal Atomic # 8 Polarization: -88.82 SS G_CDS: -4.28 Total: -93.09 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.69 kcal Atomic # 16 Polarization: 97.10 SS G_CDS: -0.30 Total: 96.80 kcal Total: -80.12 0.89 -79.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181407483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.411 kcal (2) G-P(sol) polarization free energy of solvation -80.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds