Wall clock time and date at job start Tue Mar 31 2020 07:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46828 * 2 1 4 4 C 1.52999 * 109.46910 * 175.29934 * 3 2 1 5 5 H 1.08999 * 109.70578 * 53.10660 * 4 3 2 6 6 C 1.52763 * 109.51146 * 292.99127 * 4 3 2 7 7 C 1.53041 * 109.38656 * 185.70643 * 6 4 3 8 8 C 1.53039 * 109.53663 * 61.23833 * 7 6 4 9 9 C 1.53194 * 109.31398 * 298.63691 * 8 7 6 10 10 N 1.46925 * 108.77533 * 54.63522 * 9 8 7 11 11 S 1.65599 * 120.62890 * 126.36862 * 10 9 8 12 12 O 1.42096 * 104.27777 * 345.82207 * 11 10 9 13 13 O 1.42100 * 104.27378 * 217.96361 * 11 10 9 14 14 C 1.81396 * 104.44852 * 101.89491 * 11 10 9 15 15 C 1.53001 * 109.47395 * 174.99408 * 14 11 10 16 16 C 1.50697 * 109.47470 * 179.97438 * 15 14 11 17 17 H 1.07995 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99879 * 180.27620 * 16 15 14 19 19 N 1.31515 * 119.99982 * 359.72243 * 18 16 15 20 20 Si 1.86797 * 119.99727 * 179.72636 * 18 16 15 21 21 H 1.48496 * 109.47380 * 59.99715 * 20 18 16 22 22 H 1.48500 * 109.47141 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47066 * 299.99638 * 20 18 16 24 24 H 1.08998 * 109.46828 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46852 * 299.99803 * 1 2 3 26 26 H 1.09006 * 109.47071 * 59.99882 * 1 2 3 27 27 H 1.09000 * 109.47275 * 240.00522 * 2 1 3 28 28 H 1.08996 * 109.47044 * 120.00136 * 2 1 3 29 29 H 1.09006 * 109.47097 * 55.30556 * 3 2 1 30 30 H 1.08996 * 109.47627 * 295.29777 * 3 2 1 31 31 H 1.09004 * 109.56344 * 65.67023 * 6 4 3 32 32 H 1.08999 * 109.36062 * 305.61524 * 6 4 3 33 33 H 1.09003 * 109.45806 * 301.22332 * 7 6 4 34 34 H 1.09002 * 109.46305 * 181.26319 * 7 6 4 35 35 H 1.09008 * 109.49758 * 178.68420 * 8 7 6 36 36 H 1.09000 * 109.49923 * 58.58847 * 8 7 6 37 37 H 1.09000 * 109.58358 * 294.84803 * 9 8 7 38 38 H 1.09001 * 109.58253 * 174.42679 * 9 8 7 39 39 H 1.08993 * 109.47712 * 54.99116 * 14 11 10 40 40 H 1.09003 * 109.47226 * 294.98855 * 14 11 10 41 41 H 1.09002 * 109.46744 * 59.99405 * 15 14 11 42 42 H 1.08995 * 109.47067 * 300.00038 * 15 14 11 43 43 H 0.96995 * 119.99569 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1182 5 1 3.9946 0.8063 -0.6545 6 6 3.9711 0.9187 1.4941 7 6 5.4861 1.0543 1.6632 8 6 5.8811 2.5300 1.5720 9 6 5.4982 3.0727 0.1916 10 7 4.0701 2.8151 -0.0383 11 16 3.0475 4.0478 -0.4591 12 8 3.7879 5.2280 -0.1802 13 8 1.8431 3.7568 0.2367 14 6 2.8131 3.8509 -2.2471 15 6 1.7797 4.8655 -2.7408 16 6 1.5854 4.7024 -4.2263 17 1 2.1435 3.9506 -4.7644 18 6 0.6997 5.5171 -4.8992 19 7 0.0205 6.4329 -4.2438 20 14 0.4646 5.3200 -6.7418 21 1 -0.0175 3.9464 -7.0352 22 1 -0.5349 6.3079 -7.2218 23 1 1.7588 5.5486 -7.4332 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6095 1.9800 0.8450 30 1 1.7471 1.9315 -0.9290 31 1 3.6876 -0.1301 1.5824 32 1 3.4655 1.4989 2.2659 33 1 5.9909 0.4940 0.8762 34 1 5.7798 0.6591 2.6356 35 1 6.9572 2.6281 1.7159 36 1 5.3576 3.0951 2.3432 37 1 6.0882 2.5704 -0.5750 38 1 5.6864 4.1458 0.1558 39 1 2.4608 2.8414 -2.4585 40 1 3.7608 4.0195 -2.7586 41 1 2.1320 5.8751 -2.5294 42 1 0.8320 4.6970 -2.2294 43 1 -0.6028 7.0058 -4.7172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186600109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:54 Heat of formation + Delta-G solvation = -93.691519 kcal Electronic energy + Delta-G solvation = -22684.648595 eV Core-core repulsion = 19470.185295 eV Total energy + Delta-G solvation = -3214.463300 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.03052 -36.87747 -35.40712 -34.70688 -33.86737 -32.46986 -31.16337 -30.95689 -26.66536 -25.62971 -24.09781 -22.82746 -21.55846 -20.83880 -20.47822 -18.38121 -17.15862 -16.44860 -15.99178 -15.51353 -15.31559 -14.65500 -14.51179 -14.46526 -14.24489 -13.67123 -13.56456 -13.39879 -13.22780 -12.69637 -12.49043 -11.99837 -11.78149 -11.73881 -11.54263 -11.42965 -11.41387 -11.10014 -11.05288 -11.03614 -10.93854 -10.84371 -10.45334 -10.42651 -10.38787 -10.15166 -9.91364 -9.72343 -9.28635 -8.69063 -8.49331 -6.11620 -4.17193 0.80659 3.05653 3.27462 3.32269 3.34130 4.30323 4.38889 4.47959 4.61998 4.74169 4.85223 5.00923 5.03927 5.19309 5.21911 5.23476 5.29938 5.41645 5.52232 5.63122 5.64827 5.65922 5.74430 5.76009 5.87825 5.91750 5.95042 5.98932 6.00856 6.05476 6.26379 6.27032 6.35128 6.40810 6.52005 6.70637 6.83170 7.30989 7.37392 7.81253 8.18717 8.85943 9.47444 10.99386 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.005090 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.170461 B = 5499.469104 C = 6288.621399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.158 4.158 4 C 0.158 3.842 5 H 0.070 0.930 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.132 4.132 9 C 0.116 3.884 10 N -1.003 6.003 11 S 2.588 3.412 12 O -0.971 6.971 13 O -0.958 6.958 14 C -0.592 4.592 15 C 0.030 3.970 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.030 0.970 42 H 0.035 0.965 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.315 -13.334 10.516 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.197 4.197 4 C 0.052 3.948 5 H 0.088 0.912 6 C -0.166 4.166 7 C -0.155 4.155 8 C -0.171 4.171 9 C -0.010 4.010 10 N -0.840 5.840 11 S 2.689 3.311 12 O -0.961 6.961 13 O -0.948 6.948 14 C -0.725 4.725 15 C -0.009 4.009 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.048 0.952 42 H 0.053 0.947 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.852 -12.528 11.126 18.950 hybrid contribution 0.044 -0.406 -1.675 1.724 sum 8.896 -12.934 9.452 18.324 Atomic orbital electron populations 1.21756 0.95535 1.01057 1.02679 1.21506 0.96383 0.96136 1.01614 1.22706 0.93009 0.98045 1.05902 1.20907 0.94144 0.82448 0.97333 0.91151 1.21887 0.96101 1.01228 0.97418 1.21485 0.96062 0.96399 1.01516 1.21865 1.00995 0.96507 0.97713 1.21417 0.80545 1.02341 0.96669 1.57973 1.19501 1.21580 1.84932 1.05723 0.73629 0.72709 0.79067 1.93492 1.71801 1.46026 1.84820 1.93577 1.46683 1.83306 1.71267 1.30558 1.10289 1.10426 1.21228 1.18940 0.91734 0.91829 0.98401 1.20966 1.24343 1.18812 0.91867 0.92149 1.25058 0.95514 0.94995 0.98829 1.69945 1.26177 1.20462 1.36282 0.86540 0.78039 0.78002 0.84757 1.20079 1.21051 1.20087 0.93141 0.92490 0.92219 0.92274 0.91947 0.86759 0.91293 0.90892 0.91260 0.91955 0.92051 0.91075 0.91521 0.91778 0.88462 0.86272 0.86371 0.95155 0.94701 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.12 -1.32 5.82 -26.73 -0.16 -1.48 16 3 C -0.16 -2.19 3.04 -26.73 -0.08 -2.27 16 4 C 0.16 1.93 2.94 -67.82 -0.20 1.73 16 5 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.13 -1.31 5.01 -26.83 -0.13 -1.45 16 7 C -0.12 -1.06 5.89 -26.69 -0.16 -1.22 16 8 C -0.13 -1.33 6.08 -26.61 -0.16 -1.50 16 9 C 0.12 1.40 6.48 -3.71 -0.02 1.37 16 10 N -1.00 -14.20 3.22 -106.71 -0.34 -14.55 16 11 S 2.59 47.82 4.85 -107.50 -0.52 47.30 16 12 O -0.97 -20.49 16.31 -57.54 -0.94 -21.43 16 13 O -0.96 -19.37 13.51 -57.54 -0.78 -20.15 16 14 C -0.59 -11.66 5.82 37.16 0.22 -11.44 16 15 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 29 H 0.11 1.80 6.19 -51.93 -0.32 1.48 16 30 H 0.07 1.07 5.04 -51.93 -0.26 0.81 16 31 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 32 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.28 6.60 -51.93 -0.34 0.94 16 39 H 0.12 2.12 6.71 -51.93 -0.35 1.77 16 40 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -32.84 340.50 -10.04 -42.88 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.43 Total: 0.66 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: -0.88 Total: -30.26 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.39 Total: -40.39 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.72 Total: -41.58 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 47.82 SS G_CDS: -0.52 Total: 47.30 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.84 -10.04 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186600109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.809 kcal (2) G-P(sol) polarization free energy of solvation -32.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds