Wall clock time and date at job start Tue Mar 31 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46828 * 2 1 4 4 C 1.52999 * 109.46910 * 175.29934 * 3 2 1 5 5 H 1.08999 * 109.70578 * 53.10660 * 4 3 2 6 6 C 1.52763 * 109.51146 * 292.99127 * 4 3 2 7 7 C 1.53041 * 109.38656 * 185.70643 * 6 4 3 8 8 C 1.53039 * 109.53663 * 61.23833 * 7 6 4 9 9 C 1.53194 * 109.31398 * 298.63691 * 8 7 6 10 10 N 1.46925 * 108.77533 * 54.63522 * 9 8 7 11 11 S 1.65599 * 120.62890 * 126.36862 * 10 9 8 12 12 O 1.42096 * 104.27777 * 345.82207 * 11 10 9 13 13 O 1.42100 * 104.27378 * 217.96361 * 11 10 9 14 14 C 1.81396 * 104.44852 * 101.89491 * 11 10 9 15 15 C 1.53001 * 109.47395 * 174.99408 * 14 11 10 16 16 C 1.50697 * 109.47470 * 179.97438 * 15 14 11 17 17 H 1.07995 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99879 * 180.27620 * 16 15 14 19 19 N 1.31515 * 119.99982 * 359.72243 * 18 16 15 20 20 Si 1.86797 * 119.99727 * 179.72636 * 18 16 15 21 21 H 1.48496 * 109.47380 * 59.99715 * 20 18 16 22 22 H 1.48500 * 109.47141 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47066 * 299.99638 * 20 18 16 24 24 H 1.08998 * 109.46828 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46852 * 299.99803 * 1 2 3 26 26 H 1.09006 * 109.47071 * 59.99882 * 1 2 3 27 27 H 1.09000 * 109.47275 * 240.00522 * 2 1 3 28 28 H 1.08996 * 109.47044 * 120.00136 * 2 1 3 29 29 H 1.09006 * 109.47097 * 55.30556 * 3 2 1 30 30 H 1.08996 * 109.47627 * 295.29777 * 3 2 1 31 31 H 1.09004 * 109.56344 * 65.67023 * 6 4 3 32 32 H 1.08999 * 109.36062 * 305.61524 * 6 4 3 33 33 H 1.09003 * 109.45806 * 301.22332 * 7 6 4 34 34 H 1.09002 * 109.46305 * 181.26319 * 7 6 4 35 35 H 1.09008 * 109.49758 * 178.68420 * 8 7 6 36 36 H 1.09000 * 109.49923 * 58.58847 * 8 7 6 37 37 H 1.09000 * 109.58358 * 294.84803 * 9 8 7 38 38 H 1.09001 * 109.58253 * 174.42679 * 9 8 7 39 39 H 1.08993 * 109.47712 * 54.99116 * 14 11 10 40 40 H 1.09003 * 109.47226 * 294.98855 * 14 11 10 41 41 H 1.09002 * 109.46744 * 59.99405 * 15 14 11 42 42 H 1.08995 * 109.47067 * 300.00038 * 15 14 11 43 43 H 0.96995 * 119.99569 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5654 1.4441 0.1182 5 1 3.9946 0.8063 -0.6545 6 6 3.9711 0.9187 1.4941 7 6 5.4861 1.0543 1.6632 8 6 5.8811 2.5300 1.5720 9 6 5.4982 3.0727 0.1916 10 7 4.0701 2.8151 -0.0383 11 16 3.0475 4.0478 -0.4591 12 8 3.7879 5.2280 -0.1802 13 8 1.8431 3.7568 0.2367 14 6 2.8131 3.8509 -2.2471 15 6 1.7797 4.8655 -2.7408 16 6 1.5854 4.7024 -4.2263 17 1 2.1435 3.9506 -4.7644 18 6 0.6997 5.5171 -4.8992 19 7 0.0205 6.4329 -4.2438 20 14 0.4646 5.3200 -6.7418 21 1 -0.0175 3.9464 -7.0352 22 1 -0.5349 6.3079 -7.2218 23 1 1.7588 5.5486 -7.4332 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6095 1.9800 0.8450 30 1 1.7471 1.9315 -0.9290 31 1 3.6876 -0.1301 1.5824 32 1 3.4655 1.4989 2.2659 33 1 5.9909 0.4940 0.8762 34 1 5.7798 0.6591 2.6356 35 1 6.9572 2.6281 1.7159 36 1 5.3576 3.0951 2.3432 37 1 6.0882 2.5704 -0.5750 38 1 5.6864 4.1458 0.1558 39 1 2.4608 2.8414 -2.4585 40 1 3.7608 4.0195 -2.7586 41 1 2.1320 5.8751 -2.5294 42 1 0.8320 4.6970 -2.2294 43 1 -0.6028 7.0058 -4.7172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186600109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:53 Heat of formation + Delta-G solvation = -115.048405 kcal Electronic energy + Delta-G solvation = -22685.574699 eV Core-core repulsion = 19470.185295 eV Total energy + Delta-G solvation = -3215.389404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00403 -38.38453 -36.99218 -35.96503 -35.65039 -33.43310 -33.14225 -31.87181 -27.68961 -27.58040 -25.09897 -23.81832 -23.39352 -21.85752 -21.40409 -19.78333 -18.86662 -18.01169 -17.37147 -17.06662 -16.55764 -16.38847 -15.66338 -15.50075 -15.20272 -15.11441 -14.60101 -14.54906 -14.36109 -14.26709 -13.78435 -13.68296 -13.28331 -12.98038 -12.93044 -12.90604 -12.81460 -12.63712 -12.38457 -12.25725 -12.16236 -11.91403 -11.85357 -11.78099 -11.67159 -11.31370 -11.25120 -11.10146 -10.98326 -10.65802 -9.83163 -8.27575 -6.42330 -0.69562 1.39178 1.42975 1.51246 1.75054 2.36773 2.83972 3.05436 3.21451 3.45528 3.83434 3.94856 4.01907 4.08493 4.14773 4.18833 4.33250 4.34379 4.43126 4.54283 4.66712 4.68759 4.77400 4.84314 4.87138 4.97954 5.05311 5.07784 5.11144 5.21299 5.22916 5.25037 5.28124 5.33098 5.39919 5.45433 5.53779 5.63092 5.66425 5.81454 6.04057 6.70638 7.27980 8.84588 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018697 B = 0.005090 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.170461 B = 5499.469104 C = 6288.621399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.113 4.113 3 C -0.163 4.163 4 C 0.153 3.847 5 H 0.098 0.902 6 C -0.127 4.127 7 C -0.113 4.113 8 C -0.132 4.132 9 C 0.105 3.895 10 N -0.994 5.994 11 S 2.606 3.394 12 O -1.002 7.002 13 O -0.982 6.982 14 C -0.591 4.591 15 C 0.025 3.975 16 C -0.541 4.541 17 H 0.074 0.926 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.263 1.263 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.038 0.962 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.001 0.999 42 H 0.007 0.993 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.306 -16.379 9.937 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.202 4.202 4 C 0.048 3.952 5 H 0.116 0.884 6 C -0.166 4.166 7 C -0.151 4.151 8 C -0.171 4.171 9 C -0.020 4.020 10 N -0.834 5.834 11 S 2.706 3.294 12 O -0.992 6.992 13 O -0.972 6.972 14 C -0.722 4.722 15 C -0.014 4.014 16 C -0.580 4.580 17 H 0.092 0.908 18 C -0.201 4.201 19 N -0.574 5.574 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.188 1.188 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.019 0.981 42 H 0.025 0.975 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.847 -15.575 10.539 21.710 hybrid contribution -0.558 0.519 -1.403 1.596 sum 10.289 -15.056 9.136 20.397 Atomic orbital electron populations 1.21799 0.96396 1.02026 1.01228 1.21505 0.95641 0.94406 1.03522 1.22667 0.94551 0.99515 1.03480 1.21199 0.92923 0.81320 0.99735 0.88384 1.21920 0.97193 1.02224 0.95216 1.21497 0.94863 0.95494 1.03195 1.21904 1.02357 0.97219 0.95595 1.21737 0.79114 1.02031 0.99087 1.57655 1.20052 1.21467 1.84177 1.04899 0.73456 0.72912 0.78171 1.93444 1.72453 1.48386 1.84939 1.93569 1.48480 1.83785 1.71350 1.30469 1.09156 1.09491 1.23109 1.18768 0.92285 0.92177 0.98130 1.21468 1.24484 1.19085 0.92949 0.90760 1.26124 0.95049 0.94456 1.04452 1.70100 1.27059 1.21607 1.38602 0.85361 0.78413 0.78474 0.78004 1.18671 1.20807 1.18754 0.90909 0.93392 0.94323 0.90682 0.89518 0.89384 0.93726 0.88309 0.93051 0.90163 0.90335 0.88558 0.93290 0.88853 0.90180 0.84324 0.84672 0.98111 0.97473 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.91 71.98 0.71 -2.84 16 2 C -0.11 -2.28 5.82 30.60 0.18 -2.10 16 3 C -0.16 -4.44 3.04 30.59 0.09 -4.34 16 4 C 0.15 3.39 2.94 44.83 0.13 3.52 16 5 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 6 C -0.13 -2.22 5.01 30.53 0.15 -2.07 16 7 C -0.11 -1.58 5.89 30.62 0.18 -1.40 16 8 C -0.13 -2.31 6.08 30.67 0.19 -2.13 16 9 C 0.10 2.32 6.48 86.36 0.56 2.88 16 10 N -0.99 -27.05 3.22 -491.51 -1.58 -28.63 16 11 S 2.61 99.37 4.85 -56.49 -0.27 99.10 16 12 O -1.00 -43.96 16.31 -127.65 -2.08 -46.04 16 13 O -0.98 -41.85 13.51 -127.65 -1.72 -43.58 16 14 C -0.59 -23.72 5.82 71.98 0.42 -23.30 16 15 C 0.03 1.37 4.98 29.85 0.15 1.51 16 16 C -0.54 -30.65 9.11 25.60 0.23 -30.42 16 17 H 0.07 3.88 7.74 -2.91 -0.02 3.86 16 18 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 19 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 20 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 1.34 6.56 -2.39 -0.02 1.32 16 29 H 0.09 2.86 6.19 -2.38 -0.01 2.85 16 30 H 0.04 1.40 5.04 -2.39 -0.01 1.39 16 31 H 0.10 1.25 6.81 -2.38 -0.02 1.23 16 32 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 2.07 6.60 -2.39 -0.02 2.05 16 39 H 0.14 4.94 6.71 -2.39 -0.02 4.92 16 40 H 0.14 4.87 8.14 -2.39 -0.02 4.85 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -74.44 340.50 1.07 -73.37 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.97 Total: 17.83 kcal Atomic # 6 Polarization: -63.81 SS G_CDS: 3.46 Total: -60.35 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -1.30 Total: -86.03 kcal Atomic # 8 Polarization: -85.81 SS G_CDS: -3.81 Total: -89.61 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 99.37 SS G_CDS: -0.27 Total: 99.10 kcal Total: -74.44 1.07 -73.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186600109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.683 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds