Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.47146 * 2 1 4 4 C 1.38253 * 119.99662 * 89.99883 * 3 2 1 5 5 C 1.38218 * 119.99790 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.00109 * 0.02568 * 5 4 3 7 7 C 1.38210 * 119.99620 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99942 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47363 * 89.99945 * 8 7 6 10 10 O 1.21286 * 119.99450 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00116 * 180.02562 * 9 8 7 12 12 C 1.47066 * 136.05397 * 179.97438 * 11 9 8 13 13 C 1.53503 * 87.98596 * 152.84244 * 12 11 9 14 14 O 1.42897 * 114.20466 * 272.48084 * 13 12 11 15 15 C 1.50701 * 114.20491 * 139.65156 * 13 12 11 16 16 H 1.07990 * 120.00399 * 0.02562 * 15 13 12 17 17 C 1.37879 * 119.99442 * 180.02562 * 15 13 12 18 18 N 1.31517 * 120.00173 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99605 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47160 * 59.99885 * 19 17 15 21 21 H 1.48505 * 109.46723 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47020 * 299.99125 * 19 17 15 23 23 C 1.47060 * 136.06000 * 359.94777 * 11 9 8 24 24 C 1.38213 * 119.99811 * 270.27569 * 3 2 1 25 25 H 1.09003 * 109.46784 * 299.99713 * 1 2 3 26 26 H 1.08994 * 109.46910 * 59.99797 * 1 2 3 27 27 H 1.08998 * 109.46772 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47154 * 239.99987 * 2 1 3 29 29 H 1.09002 * 109.47527 * 120.00168 * 2 1 3 30 30 H 1.08000 * 120.00389 * 0.02562 * 4 3 2 31 31 H 1.08003 * 120.00089 * 180.02562 * 5 4 3 32 32 H 1.07991 * 120.00143 * 179.97438 * 6 5 4 33 33 H 1.09004 * 109.47013 * 330.00243 * 8 7 6 34 34 H 1.08998 * 109.47212 * 210.00105 * 8 7 6 35 35 H 1.09000 * 113.46827 * 267.61848 * 12 11 9 36 36 H 1.09003 * 113.47151 * 38.06638 * 12 11 9 37 37 H 0.96701 * 113.99865 * 179.97438 * 14 13 12 38 38 H 0.97003 * 119.99434 * 180.02562 * 18 17 15 39 39 H 1.09007 * 113.46761 * 321.93701 * 23 11 9 40 40 H 1.09003 * 113.46830 * 92.37669 * 23 11 9 41 41 H 1.07994 * 120.00178 * 0.02654 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.2628 2.0725 1.1973 5 6 2.7240 3.3755 1.1974 6 6 2.9545 4.0273 0.0000 7 6 2.7241 3.3757 -1.1969 8 6 2.9748 4.0863 -2.5020 9 6 4.3981 3.8501 -2.9374 10 8 5.1363 3.1719 -2.2547 11 7 4.8508 4.3933 -4.0847 12 6 6.1217 4.3983 -4.8247 13 6 5.3102 4.6143 -6.1097 14 8 4.8641 3.4072 -6.7308 15 6 5.9305 5.5911 -7.0753 16 1 6.8680 6.0688 -6.8325 17 6 5.3009 5.8746 -8.2687 18 7 4.1594 5.2923 -8.5646 19 14 6.0701 7.0847 -9.4659 20 1 7.4099 6.5923 -9.8752 21 1 5.2032 7.2137 -10.6647 22 1 6.2087 8.4097 -8.8099 23 6 4.2912 5.2415 -5.1478 24 6 2.2573 2.0743 -1.1970 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.0831 1.5633 2.1327 31 1 2.9044 3.8845 2.1327 32 1 3.3144 5.0454 0.0000 33 1 2.8074 5.1555 -2.3715 34 1 2.2940 3.7020 -3.2615 35 1 6.7675 5.2394 -4.5726 36 1 6.6440 3.4419 -4.7969 37 1 4.3530 3.5468 -7.5398 38 1 3.7167 5.4916 -9.4044 39 1 3.2568 5.0023 -5.3947 40 1 4.4499 6.3071 -4.9816 41 1 2.0727 1.5668 -2.1322 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193974645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -36.191439 kcal Electronic energy + Delta-G solvation = -22400.037149 eV Core-core repulsion = 19052.623289 eV Total energy + Delta-G solvation = -3347.413861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.89496 -39.13718 -37.32457 -34.39335 -33.99851 -32.29136 -32.20773 -29.60173 -29.05764 -27.11233 -25.15123 -24.97747 -23.95667 -22.01428 -20.72575 -19.83622 -18.20319 -17.43425 -16.45223 -16.26457 -15.72120 -15.45567 -15.08218 -14.74553 -14.60969 -14.16157 -13.85025 -13.68751 -13.23162 -13.09368 -12.91939 -12.64211 -12.43099 -12.09222 -12.02042 -11.70884 -11.60094 -11.57006 -11.26521 -11.06485 -11.03347 -10.81762 -10.73373 -10.51444 -10.28124 -9.65071 -9.21398 -8.80652 -8.66429 -8.51103 -8.37621 -7.83670 -6.42256 -4.52631 1.44346 1.51036 3.14600 3.20646 3.21486 3.24115 3.52926 3.94876 4.16679 4.70079 4.75969 4.80701 4.91879 5.10121 5.16558 5.19384 5.26891 5.36145 5.46461 5.57044 5.59325 5.66284 5.71330 5.80400 5.84215 5.93311 6.04494 6.15347 6.19177 6.20527 6.40434 6.50075 6.54120 6.63248 6.66801 6.68236 6.74639 7.09061 7.12316 7.60923 7.78801 8.49565 8.54553 8.79354 9.18794 9.47282 10.64342 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031338 B = 0.003182 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.279916 B = 8797.808470 C = 9162.569356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.124 4.124 5 C -0.118 4.118 6 C -0.111 4.111 7 C -0.052 4.052 8 C -0.098 4.098 9 C 0.537 3.463 10 O -0.556 6.556 11 N -0.636 5.636 12 C 0.107 3.893 13 C 0.240 3.760 14 O -0.571 6.571 15 C -0.534 4.534 16 H 0.072 0.928 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.071 3.929 24 C -0.102 4.102 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.117 0.883 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.394 0.606 38 H 0.274 0.726 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 -2.902 12.996 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.083 4.083 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.129 4.129 7 C -0.052 4.052 8 C -0.137 4.137 9 C 0.326 3.674 10 O -0.436 6.436 11 N -0.370 5.370 12 C -0.015 4.015 13 C 0.198 3.802 14 O -0.384 6.384 15 C -0.572 4.572 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.539 5.539 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.052 4.052 24 C -0.120 4.120 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.250 0.750 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.004 -3.638 13.891 15.977 hybrid contribution 0.010 1.079 -1.126 1.560 sum -6.994 -2.559 12.765 14.778 Atomic orbital electron populations 1.21744 0.94847 1.01513 1.02175 1.20533 0.96027 0.92833 1.02823 1.19806 0.99406 0.96028 0.93087 1.20926 1.01023 0.95031 0.97215 1.21025 0.99912 0.95009 0.97675 1.20951 0.99945 1.00035 0.92000 1.19340 0.97750 0.94326 0.93790 1.20599 0.95446 1.02037 0.95661 1.19848 0.88906 0.79831 0.78788 1.90661 1.58804 1.40673 1.53449 1.49732 1.16768 1.49888 1.20621 1.23309 0.87849 1.01028 0.89357 1.19534 0.88956 0.83654 0.88034 1.86048 1.75623 1.30832 1.45932 1.21403 1.08447 1.24545 1.02843 0.90985 1.25079 0.94276 0.95881 0.97803 1.69256 1.16157 1.43462 1.25031 0.86362 0.79307 0.80922 0.79780 1.19826 1.20975 1.19869 1.24224 1.00845 0.94839 0.85340 1.20874 0.99511 0.93988 0.97647 0.92689 0.92474 0.92547 0.90984 0.91203 0.86524 0.86305 0.86406 0.88432 0.88222 0.89800 0.91653 0.74998 0.91513 0.91755 0.90086 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.90 37.16 0.37 -0.91 16 2 C -0.08 -0.87 6.06 -27.88 -0.17 -1.04 16 3 C -0.08 -1.08 5.13 -104.62 -0.54 -1.61 16 4 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 5 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 6 C -0.11 -1.57 9.70 -39.58 -0.38 -1.95 16 7 C -0.05 -0.80 4.37 -104.62 -0.46 -1.25 16 8 C -0.10 -1.54 5.66 -29.03 -0.16 -1.71 16 9 C 0.54 10.95 8.07 -10.99 -0.09 10.87 16 10 O -0.56 -13.09 16.81 5.55 0.09 -13.00 16 11 N -0.64 -13.44 3.69 -185.20 -0.68 -14.12 16 12 C 0.11 2.35 8.03 -8.51 -0.07 2.28 16 13 C 0.24 5.71 1.58 -91.24 -0.14 5.57 16 14 O -0.57 -14.68 13.54 -35.23 -0.48 -15.15 16 15 C -0.53 -13.21 8.69 -34.44 -0.30 -13.51 16 16 H 0.07 1.73 7.81 -52.49 -0.41 1.32 16 17 C 0.07 1.77 5.40 -17.82 -0.10 1.67 16 18 N -0.90 -22.41 11.01 55.43 0.61 -21.80 16 19 Si 0.91 19.14 29.54 -169.99 -5.02 14.12 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 23 C 0.07 1.49 7.84 -8.50 -0.07 1.42 16 24 C -0.10 -1.50 9.36 -39.58 -0.37 -1.88 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 29 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 30 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.10 1.33 8.09 -51.93 -0.42 0.91 16 34 H 0.10 1.47 8.08 -51.93 -0.42 1.05 16 35 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 36 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.39 10.16 6.33 45.56 0.29 10.45 16 38 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -28.86 349.38 -9.05 -37.92 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.58 Total: 12.60 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -3.26 Total: -5.83 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.07 Total: -35.92 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.38 Total: -28.15 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.86 -9.05 -37.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193974645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.727 kcal (2) G-P(sol) polarization free energy of solvation -28.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds