Wall clock time and date at job start Tue Mar 31 2020 07:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 C 1.53001 * 109.46864 * 239.99845 * 2 1 3 5 5 N 1.46494 * 109.47304 * 120.00265 * 2 1 3 6 6 C 1.34778 * 120.00459 * 59.99777 * 5 2 1 7 7 O 1.21717 * 119.99469 * 359.97438 * 6 5 2 8 8 C 1.46252 * 120.00284 * 180.02562 * 6 5 2 9 9 C 1.35021 * 120.00100 * 173.22595 * 8 6 5 10 10 C 1.46961 * 119.99923 * 348.49965 * 9 8 6 11 11 C 1.40026 * 120.09884 * 316.61981 * 10 9 8 12 12 C 1.37601 * 119.89281 * 179.78994 * 11 10 9 13 13 C 1.39180 * 120.10435 * 0.48431 * 12 11 10 14 14 O 1.35567 * 119.89842 * 179.76941 * 13 12 11 15 15 C 1.34781 * 116.99880 * 174.34767 * 14 13 12 16 16 H 1.08004 * 120.00029 * 5.05307 * 15 14 13 17 17 C 1.38718 * 119.99914 * 185.05692 * 15 14 13 18 18 N 1.31506 * 120.00024 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99994 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47304 * 59.99850 * 19 17 15 21 21 H 1.48503 * 109.47454 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47323 * 299.99880 * 19 17 15 23 23 C 1.39180 * 120.19971 * 359.74264 * 13 12 11 24 24 C 1.37598 * 120.10200 * 0.02562 * 23 13 12 25 25 H 1.09010 * 109.46539 * 300.00114 * 1 2 3 26 26 H 1.09001 * 109.47448 * 59.99647 * 1 2 3 27 27 H 1.09002 * 109.47267 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47039 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46884 * 299.99801 * 3 2 1 30 30 H 1.08995 * 109.47053 * 60.00362 * 3 2 1 31 31 H 1.09002 * 109.47161 * 300.00043 * 4 2 1 32 32 H 1.09006 * 109.47078 * 60.00259 * 4 2 1 33 33 H 1.09002 * 109.47161 * 179.97438 * 4 2 1 34 34 H 0.97007 * 120.00006 * 239.99476 * 5 2 1 35 35 H 1.08003 * 119.99721 * 352.94366 * 8 6 5 36 36 H 1.08003 * 120.00133 * 168.50298 * 9 8 6 37 37 H 1.07995 * 120.05429 * 359.97438 * 11 10 9 38 38 H 1.08003 * 119.94524 * 180.22825 * 12 11 10 39 39 H 0.97006 * 120.00133 * 180.02562 * 18 17 15 40 40 H 1.07995 * 119.94633 * 179.97438 * 23 13 12 41 41 H 1.07993 * 120.04683 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 6 1.6928 -1.9810 1.4094 7 8 0.9926 -2.5723 0.6085 8 6 2.1799 -2.6703 2.6038 9 6 1.7450 -3.9163 2.8888 10 6 0.6050 -4.4826 2.1543 11 6 -0.5279 -3.6987 1.9032 12 6 -1.5911 -4.2319 1.2113 13 6 -1.5459 -5.5511 0.7701 14 8 -2.5977 -6.0735 0.0928 15 6 -2.4466 -7.3154 -0.4087 16 1 -1.5508 -7.8792 -0.1938 17 6 -3.4415 -7.8692 -1.2009 18 7 -4.5324 -7.1828 -1.4622 19 14 -3.2318 -9.5901 -1.8966 20 1 -3.0794 -10.5595 -0.7820 21 1 -4.4268 -9.9473 -2.7027 22 1 -2.0226 -9.6320 -2.7578 23 6 -0.4239 -6.3353 1.0214 24 6 0.6460 -5.8093 1.7084 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7209 -1.2495 34 1 2.5762 -0.2192 1.8346 35 1 2.8910 -2.1843 3.2554 36 1 2.2348 -4.4969 3.6566 37 1 -0.5658 -2.6765 2.2495 38 1 -2.4638 -3.6269 1.0140 39 1 -5.2283 -7.5703 -2.0158 40 1 -0.3934 -7.3586 0.6775 41 1 1.5159 -6.4187 1.9033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229865941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:55 Heat of formation + Delta-G solvation = -16.047894 kcal Electronic energy + Delta-G solvation = -22837.385713 eV Core-core repulsion = 19490.845342 eV Total energy + Delta-G solvation = -3346.540371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03815 -38.79456 -37.03165 -35.84682 -33.03208 -32.22341 -31.64180 -30.08878 -27.90141 -27.44098 -27.16024 -25.42070 -23.50515 -21.79042 -21.15971 -19.59000 -19.16625 -17.90029 -17.17955 -16.55472 -15.79501 -14.85785 -14.66313 -14.53634 -14.29689 -14.07161 -13.77512 -13.50914 -13.37157 -13.25362 -12.96003 -12.55312 -12.42572 -12.15716 -12.06672 -12.03546 -11.67436 -11.58062 -11.32491 -11.10152 -11.02686 -10.89010 -10.65910 -10.59192 -10.39091 -9.41465 -9.21451 -9.10437 -8.87525 -8.65757 -7.87718 -6.82357 -6.43400 -3.99246 1.29386 2.45687 2.74383 3.15047 3.17793 3.19151 3.39140 3.70825 3.99211 4.70803 4.73501 4.88722 5.03826 5.12300 5.19160 5.26848 5.38657 5.43430 5.56914 5.63252 5.75415 5.76476 5.79082 5.82169 5.88211 5.96261 6.01942 6.28073 6.34667 6.45220 6.47776 6.50473 6.64536 6.77138 6.82969 7.06873 7.14902 7.39551 7.48884 7.53357 7.80567 7.95481 8.03238 8.65453 9.02222 9.74490 10.74420 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021566 B = 0.003850 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.055456 B = 7271.810098 C = 7962.459051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.171 3.829 3 C -0.153 4.153 4 C -0.164 4.164 5 N -0.730 5.730 6 C 0.541 3.459 7 O -0.507 6.507 8 C -0.268 4.268 9 C 0.025 3.975 10 C -0.188 4.188 11 C 0.014 3.986 12 C -0.203 4.203 13 C 0.171 3.829 14 O -0.173 6.173 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.251 4.251 24 C -0.042 4.042 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.393 0.607 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.125 0.875 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.934 12.843 6.214 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.086 3.914 3 C -0.211 4.211 4 C -0.222 4.222 5 N -0.384 5.384 6 C 0.331 3.669 7 O -0.383 6.383 8 C -0.289 4.289 9 C 0.006 3.994 10 C -0.189 4.189 11 C -0.004 4.004 12 C -0.222 4.222 13 C 0.117 3.883 14 O -0.076 6.076 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.270 4.270 24 C -0.060 4.060 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.226 0.774 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 12.945 12.468 5.405 18.768 hybrid contribution 0.606 -0.489 -0.044 0.780 sum 13.550 11.979 5.361 18.864 Atomic orbital electron populations 1.22247 0.94230 1.04656 1.01192 1.20229 0.94448 0.91246 0.85517 1.22077 1.01233 0.95056 1.02731 1.22229 1.00400 1.03369 0.96176 1.46160 1.54820 1.12301 1.25080 1.18427 0.80220 0.81094 0.87202 1.90928 1.35887 1.64868 1.46645 1.22639 1.07919 0.98423 0.99897 1.22316 0.90851 0.92852 0.93418 1.18280 0.95480 0.94924 1.10180 1.20429 0.91191 0.95864 0.92952 1.19997 1.00829 0.93733 1.07685 1.19525 0.86911 0.91944 0.89966 1.83904 1.32762 1.31467 1.59421 1.21344 1.05932 0.89159 1.30221 0.88970 1.25312 0.94829 1.00071 0.96302 1.70014 1.06811 1.37362 1.35305 0.85778 0.78215 0.80333 0.79100 1.19465 1.20264 1.19453 1.20941 0.95666 1.01359 1.09049 1.20735 0.96484 0.93252 0.95554 0.93069 0.92270 0.89626 0.92271 0.91120 0.92186 0.89821 0.92308 0.93195 0.77405 0.86374 0.86257 0.88102 0.86925 0.91931 0.85734 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.40 37.16 0.31 -1.78 16 2 C 0.17 1.90 1.06 -131.82 -0.14 1.76 16 3 C -0.15 -1.21 8.59 37.16 0.32 -0.89 16 4 C -0.16 -2.04 8.40 37.16 0.31 -1.73 16 5 N -0.73 -8.11 5.10 -49.03 -0.25 -8.36 16 6 C 0.54 7.82 6.19 -13.04 -0.08 7.74 16 7 O -0.51 -9.41 8.38 5.17 0.04 -9.37 16 8 C -0.27 -3.38 9.90 -37.51 -0.37 -3.75 16 9 C 0.03 0.36 9.80 -37.19 -0.36 -0.01 16 10 C -0.19 -3.46 4.54 -105.03 -0.48 -3.94 16 11 C 0.01 0.28 6.59 -39.14 -0.26 0.02 16 12 C -0.20 -4.66 9.97 -39.46 -0.39 -5.05 16 13 C 0.17 4.37 6.66 -38.88 -0.26 4.11 16 14 O -0.17 -5.12 9.74 0.75 0.01 -5.11 16 15 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 16 H 0.09 2.45 5.18 -52.48 -0.27 2.18 16 17 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 18 N -0.86 -25.64 13.67 55.48 0.76 -24.89 16 19 Si 0.94 20.86 29.55 -169.99 -5.02 15.84 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.25 -5.75 9.14 -39.47 -0.36 -6.12 16 24 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 25 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.40 6.16 -51.93 -0.32 1.08 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.35 6.16 -51.93 -0.32 1.03 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.39 3.18 8.45 -40.82 -0.34 2.84 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 37 H 0.10 1.83 7.01 -52.49 -0.37 1.47 16 38 H 0.11 2.53 8.06 -52.48 -0.42 2.11 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 2.83 5.62 -52.49 -0.29 2.54 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 337.90 15.07 5.09 5.09 Total: -1.00 -32.82 337.90 -7.02 -39.84 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.71 Total: 7.67 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -1.95 Total: -20.72 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.51 Total: -33.25 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.05 Total: -14.48 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.82 -7.02 -39.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229865941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.797 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds