Wall clock time and date at job start Tue Mar 31 2020 07:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46995 * 2 1 4 4 C 1.52997 * 109.46995 * 179.97438 * 3 2 1 5 5 H 1.08997 * 115.55300 * 29.32974 * 4 3 2 6 6 C 1.52998 * 117.51845 * 243.62772 * 4 3 2 7 7 C 1.52999 * 60.00188 * 252.52144 * 6 4 3 8 8 H 1.08998 * 117.51848 * 107.48489 * 7 6 4 9 9 N 1.46499 * 117.49677 * 252.51050 * 7 6 4 10 10 C 1.34775 * 120.00072 * 223.61847 * 9 7 6 11 11 O 1.21596 * 119.99891 * 0.02562 * 10 9 7 12 12 C 1.47534 * 120.00085 * 179.97438 * 10 9 7 13 13 C 1.39662 * 120.20090 * 0.02822 * 12 10 9 14 14 C 1.37825 * 119.92637 * 179.97438 * 13 12 10 15 15 C 1.38580 * 120.32034 * 0.02562 * 14 13 12 16 16 C 1.38032 * 120.39632 * 359.71355 * 15 14 13 17 17 C 1.38826 * 120.07578 * 0.56302 * 16 15 14 18 18 O 1.35522 * 120.16201 * 179.71344 * 17 16 15 19 19 C 1.34806 * 116.99887 * 5.60402 * 18 17 16 20 20 H 1.07999 * 120.00157 * 354.93035 * 19 18 17 21 21 C 1.38699 * 120.00020 * 174.93477 * 19 18 17 22 22 N 1.31523 * 120.00140 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00102 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47268 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47423 * 119.99883 * 23 21 19 26 26 H 1.48504 * 109.47060 * 239.99859 * 23 21 19 27 27 H 1.09001 * 109.47235 * 60.00193 * 1 2 3 28 28 H 1.09007 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47075 * 299.99396 * 1 2 3 30 30 H 1.09004 * 109.47211 * 239.99921 * 2 1 3 31 31 H 1.09001 * 109.47235 * 119.99807 * 2 1 3 32 32 H 1.08997 * 109.46716 * 60.00384 * 3 2 1 33 33 H 1.09001 * 109.46971 * 299.99969 * 3 2 1 34 34 H 1.09005 * 117.50050 * 145.03084 * 6 4 3 35 35 H 1.08999 * 117.50106 * 0.02562 * 6 4 3 36 36 H 0.97003 * 119.99926 * 43.62531 * 9 7 6 37 37 H 1.08008 * 120.03535 * 359.95018 * 13 12 10 38 38 H 1.07997 * 119.84445 * 180.02562 * 14 13 12 39 39 H 1.07995 * 119.79734 * 180.02562 * 15 14 13 40 40 H 1.08005 * 119.96093 * 180.28264 * 16 15 14 41 41 H 0.96994 * 120.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 1 4.0403 0.5852 -0.4807 6 6 4.2763 2.0455 1.2165 7 6 4.2764 2.7946 -0.1175 8 1 3.6512 3.6840 -0.1957 9 7 5.5332 2.8376 -0.8690 10 6 5.9388 3.9899 -1.4384 11 8 5.2618 4.9939 -1.3280 12 6 7.2048 4.0334 -2.1947 13 6 7.9860 2.8829 -2.3238 14 6 9.1674 2.9298 -3.0320 15 6 9.5856 4.1142 -3.6174 16 6 8.8213 5.2579 -3.5027 17 6 7.6313 5.2307 -2.7882 18 8 6.8824 6.3540 -2.6697 19 6 7.2874 7.4357 -3.3648 20 1 8.2162 7.4072 -3.9152 21 6 6.5114 8.5852 -3.3730 22 7 5.3801 8.6198 -2.7030 23 14 7.0721 10.0839 -4.3368 24 1 8.3682 9.7899 -4.9992 25 1 6.0552 10.4201 -5.3652 26 1 7.2392 11.2334 -3.4115 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 5.2114 1.5847 1.5351 35 1 3.6511 2.4419 2.0165 36 1 6.0735 2.0368 -0.9569 37 1 7.6648 1.9575 -1.8687 38 1 9.7702 2.0392 -3.1313 39 1 10.5126 4.1413 -4.1708 40 1 9.1517 6.1761 -3.9656 41 1 4.8372 9.4235 -2.7090 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267611565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:32 Heat of formation + Delta-G solvation = -23.620569 kcal Electronic energy + Delta-G solvation = -22192.497936 eV Core-core repulsion = 18845.629189 eV Total energy + Delta-G solvation = -3346.868747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.67916 -38.59221 -37.18219 -36.32218 -34.35962 -32.40830 -32.26592 -30.18426 -28.92508 -27.26604 -25.39957 -23.53503 -22.13257 -21.78341 -20.98077 -20.60851 -19.80376 -18.03978 -17.51650 -16.21296 -16.04202 -15.25946 -14.68753 -14.56777 -14.33389 -14.23827 -14.05408 -13.72884 -13.44231 -13.30132 -13.07752 -12.65721 -12.49684 -12.30795 -11.96266 -11.71824 -11.48305 -11.33733 -11.15116 -11.12928 -10.93068 -10.92162 -10.78383 -10.64874 -10.44469 -9.95506 -9.57050 -8.88657 -8.85839 -8.34412 -8.20243 -7.31336 -6.44512 -4.04406 1.70346 2.31333 3.11877 3.12750 3.18504 3.53948 3.60701 3.93388 4.04389 4.61615 4.67198 4.86363 4.91534 5.04466 5.05989 5.11639 5.18154 5.23784 5.41474 5.44397 5.51635 5.63368 5.70019 5.70632 5.79593 5.80804 5.91171 5.97850 6.10467 6.11452 6.14448 6.23125 6.32790 6.55929 6.68260 6.90471 6.99737 7.06170 7.23592 7.29420 7.68825 7.92019 8.11665 8.95091 9.08899 9.67464 10.69347 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003874 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.398047 B = 7226.238173 C = 8651.784705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.089 4.089 4 C -0.164 4.164 5 H 0.103 0.897 6 C -0.194 4.194 7 C 0.099 3.901 8 H 0.136 0.864 9 N -0.715 5.715 10 C 0.557 3.443 11 O -0.499 6.499 12 C -0.227 4.227 13 C -0.038 4.038 14 C -0.231 4.231 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.190 3.810 18 O -0.124 6.124 19 C -0.404 4.404 20 H 0.095 0.905 21 C 0.044 3.956 22 N -0.832 5.832 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.393 0.607 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.516 -14.805 3.626 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.127 4.127 4 C -0.184 4.184 5 H 0.121 0.879 6 C -0.233 4.233 7 C -0.008 4.008 8 H 0.154 0.846 9 N -0.368 5.368 10 C 0.347 3.653 11 O -0.373 6.373 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.069 4.069 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.022 6.022 19 C -0.479 4.479 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.227 0.773 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.150 0.850 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.441 -13.743 3.868 14.484 hybrid contribution 0.745 0.175 -0.504 0.916 sum -1.696 -13.568 3.364 14.081 Atomic orbital electron populations 1.21788 0.96034 1.01390 1.01915 1.21497 0.95573 0.96809 1.01895 1.21196 0.92187 0.96884 1.02398 1.22851 0.95176 0.97744 1.02634 0.87882 1.23598 1.02444 1.04799 0.92475 1.21582 0.88572 0.96443 0.94213 0.84640 1.45331 1.22893 1.12717 1.55853 1.18241 0.85651 0.82578 0.78792 1.90941 1.55060 1.32932 1.58334 1.18815 0.98735 0.93308 1.12345 1.20751 0.93732 0.95333 0.95885 1.20459 0.99281 0.98054 1.07202 1.20903 0.97593 0.92456 0.95963 1.21163 0.97168 0.99866 1.07475 1.19266 0.89811 0.86901 0.91039 1.84172 1.45268 1.15594 1.57135 1.21549 1.07605 0.89553 1.29225 0.88803 1.25392 0.95127 0.98638 0.97187 1.70138 1.11038 1.28489 1.36658 0.85656 0.78859 0.79999 0.78946 1.18974 1.19998 1.20016 0.92661 0.92955 0.92784 0.92088 0.92068 0.91664 0.91339 0.88873 0.88359 0.77267 0.87123 0.87263 0.87157 0.85033 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.04 5.89 -26.73 -0.16 -1.20 16 3 C -0.09 -0.92 5.50 -26.73 -0.15 -1.06 16 4 C -0.16 -1.86 5.66 -90.62 -0.51 -2.37 16 5 H 0.10 1.07 8.07 -51.93 -0.42 0.65 16 6 C -0.19 -2.27 10.10 -26.73 -0.27 -2.54 16 7 C 0.10 1.48 6.15 -67.93 -0.42 1.07 16 8 H 0.14 2.39 7.40 -51.93 -0.38 2.00 16 9 N -0.72 -11.89 5.52 -54.85 -0.30 -12.20 16 10 C 0.56 12.45 7.76 -12.47 -0.10 12.35 16 11 O -0.50 -13.81 14.73 -16.57 -0.24 -14.05 16 12 C -0.23 -4.98 5.89 -104.81 -0.62 -5.60 16 13 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 14 C -0.23 -3.79 10.03 -39.61 -0.40 -4.19 16 15 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 16 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 17 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 18 O -0.12 -3.67 7.84 -21.04 -0.16 -3.83 16 19 C -0.40 -11.46 9.49 30.90 0.29 -11.17 16 20 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 21 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 22 N -0.83 -25.15 13.67 55.48 0.76 -24.39 16 23 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.65 7.88 -51.93 -0.41 0.24 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 36 H 0.39 5.24 6.86 -40.82 -0.28 4.96 16 37 H 0.11 1.47 6.40 -52.48 -0.34 1.13 16 38 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 41 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 346.79 15.07 5.23 5.23 Total: -1.00 -33.90 346.79 -8.94 -42.84 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.75 Total: 8.61 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -3.44 Total: -17.75 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.46 Total: -36.59 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.41 Total: -17.89 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.90 -8.94 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267611565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.223 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds