Wall clock time and date at job start Tue Mar 31 2020 07:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50692 * 109.47500 * 2 1 4 4 C 1.33017 * 120.00141 * 83.14185 * 3 2 1 5 5 C 1.47065 * 119.99857 * 353.66777 * 4 3 2 6 6 O 1.21630 * 119.99971 * 3.53517 * 5 4 3 7 7 N 1.34776 * 119.99791 * 183.53840 * 5 4 3 8 8 C 1.39834 * 119.99529 * 174.87554 * 7 5 4 9 9 C 1.38991 * 120.04134 * 326.57756 * 8 7 5 10 10 C 1.38148 * 120.06314 * 180.02562 * 9 8 7 11 11 C 1.38173 * 120.14394 * 359.73119 * 10 9 8 12 12 C 1.38918 * 120.07427 * 0.54373 * 11 10 9 13 13 O 1.35743 * 120.03340 * 179.72692 * 12 11 10 14 14 C 1.34824 * 117.00295 * 175.01043 * 13 12 11 15 15 H 1.08000 * 120.00124 * 5.05182 * 14 13 12 16 16 C 1.38652 * 120.00415 * 185.05389 * 14 13 12 17 17 N 1.31561 * 119.99735 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00445 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46744 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47738 * 119.99718 * 18 16 14 21 21 H 1.48507 * 109.47151 * 240.00103 * 18 16 14 22 22 C 1.38740 * 120.03760 * 146.60597 * 8 7 5 23 23 C 1.50696 * 120.00171 * 263.14172 * 3 2 1 24 24 C 1.53000 * 109.47212 * 275.00105 * 23 3 2 25 25 H 1.08996 * 109.47914 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46935 * 300.00238 * 1 2 3 27 27 H 1.08996 * 109.47158 * 59.99461 * 1 2 3 28 28 H 1.09004 * 109.46935 * 239.99762 * 2 1 3 29 29 H 1.09003 * 109.46905 * 120.00807 * 2 1 3 30 30 H 1.07994 * 120.00031 * 173.65939 * 4 3 2 31 31 H 0.96995 * 120.00591 * 354.87095 * 7 5 4 32 32 H 1.08003 * 119.96542 * 0.02562 * 9 8 7 33 33 H 1.08000 * 119.92673 * 179.97438 * 10 9 8 34 34 H 1.07997 * 119.95980 * 180.27693 * 11 10 9 35 35 H 0.96999 * 119.99743 * 179.97438 * 17 16 14 36 36 H 1.08002 * 120.06795 * 359.97438 * 22 8 7 37 37 H 1.09006 * 109.47268 * 35.00000 * 23 3 2 38 38 H 1.09001 * 109.47347 * 154.99994 * 23 3 2 39 39 H 1.08998 * 109.47211 * 299.99566 * 24 23 3 40 40 H 1.08994 * 109.47259 * 59.99991 * 24 23 3 41 41 H 1.09003 * 109.46974 * 179.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1244 2.0936 1.1437 5 6 1.6071 1.5038 2.3876 6 8 1.1536 0.3752 2.3828 7 7 1.6354 2.2138 3.5328 8 6 1.0473 1.6962 4.6910 9 6 -0.0882 0.8999 4.5987 10 6 -0.6699 0.3887 5.7427 11 6 -0.1222 0.6624 6.9814 12 6 1.0093 1.4622 7.0809 13 8 1.5434 1.7350 8.2986 14 6 2.6985 2.4301 8.3186 15 1 3.1140 2.8136 7.3984 16 6 3.3531 2.6526 9.5204 17 7 2.8468 2.1859 10.6414 18 14 4.9531 3.6162 9.5482 19 1 5.3066 4.0286 8.1661 20 1 4.7899 4.8225 10.3987 21 1 6.0353 2.7630 10.1017 22 6 1.5962 1.9773 5.9338 23 6 2.4305 2.0792 -1.2957 24 6 3.8811 1.7212 -1.6251 25 1 -0.3635 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5140 0.8899 30 1 2.5792 3.0730 1.1589 31 1 2.0638 3.0838 3.5536 32 1 -0.5161 0.6807 3.6316 33 1 -1.5524 -0.2294 5.6684 34 1 -0.5768 0.2575 7.8734 35 1 3.3050 2.3412 11.4822 36 1 2.4785 2.5957 6.0084 37 1 1.7791 1.7289 -2.0965 38 1 2.3365 3.1607 -1.1976 39 1 4.5325 2.0714 -0.8244 40 1 3.9752 0.6397 -1.7232 41 1 4.1689 2.1971 -2.5625 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268404872.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:44 Heat of formation + Delta-G solvation = -28.169760 kcal Electronic energy + Delta-G solvation = -22263.914860 eV Core-core repulsion = 18916.848846 eV Total energy + Delta-G solvation = -3347.066015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.32074 -38.79887 -37.12934 -36.00383 -34.20853 -32.23559 -32.06005 -30.48480 -29.16990 -28.35743 -25.39569 -24.87089 -23.38455 -22.25594 -21.79321 -20.22772 -18.80981 -17.96158 -17.28529 -16.89680 -15.68823 -15.25684 -14.97495 -14.94360 -14.61017 -14.27309 -14.15583 -13.90185 -13.60160 -13.47758 -13.00237 -12.88107 -12.70662 -12.35360 -12.23811 -11.87592 -11.77935 -11.59400 -11.49839 -11.19095 -11.02588 -10.86120 -10.79138 -10.68998 -10.43837 -9.74362 -9.48982 -9.27048 -9.15925 -8.79476 -7.68397 -7.12677 -6.44312 -4.03966 1.22500 2.14502 2.42315 3.11340 3.12836 3.18141 3.37997 3.40721 3.96327 4.47845 4.55028 4.62619 4.89396 4.97936 5.06835 5.10568 5.20799 5.31226 5.35250 5.48558 5.54409 5.58331 5.60038 5.71065 5.85397 5.89334 6.00078 6.06044 6.13974 6.26177 6.29152 6.30633 6.44187 6.49899 6.68379 7.01883 7.02982 7.15932 7.33297 7.44281 7.77170 7.84766 8.00372 8.41597 9.01327 9.72103 10.73944 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019341 B = 0.003600 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.357925 B = 7775.795645 C = 9026.944590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.103 4.103 3 C -0.024 4.024 4 C -0.228 4.228 5 C 0.540 3.460 6 O -0.515 6.515 7 N -0.667 5.667 8 C 0.183 3.817 9 C -0.205 4.205 10 C -0.064 4.064 11 C -0.202 4.202 12 C 0.169 3.831 13 O -0.177 6.177 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.258 4.258 23 C -0.096 4.096 24 C -0.148 4.148 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.406 0.594 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.269 0.731 36 H 0.129 0.871 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 1.214 -21.529 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.139 4.139 3 C -0.026 4.026 4 C -0.249 4.249 5 C 0.331 3.669 6 O -0.393 6.393 7 N -0.310 5.310 8 C 0.090 3.910 9 C -0.226 4.226 10 C -0.082 4.082 11 C -0.221 4.221 12 C 0.114 3.886 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.280 4.280 23 C -0.134 4.134 24 C -0.205 4.205 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.143 0.857 31 H 0.240 0.760 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.812 0.387 -21.090 21.109 hybrid contribution 1.202 1.119 0.064 1.643 sum 0.390 1.505 -21.027 21.084 Atomic orbital electron populations 1.21563 0.94214 1.01785 1.01390 1.20967 0.97060 0.92441 1.03468 1.22569 0.90373 0.95692 0.93949 1.22344 1.07973 1.02211 0.92357 1.18591 0.79246 0.85392 0.83631 1.90746 1.45339 1.17765 1.85487 1.43425 1.57060 1.21746 1.08793 1.17406 0.92278 0.96736 0.84628 1.20537 0.97600 1.05853 0.98575 1.20526 0.98296 0.97978 0.91444 1.20247 0.98952 1.05165 0.97785 1.19063 0.92197 0.91761 0.85535 1.84002 1.36674 1.64770 1.22607 1.21326 0.98133 1.32082 0.95271 0.89192 1.25275 0.99252 0.97726 0.94257 1.70049 1.38704 1.42861 0.98168 0.85661 0.80198 0.78881 0.78732 1.19216 1.20147 1.20149 1.20826 1.04919 1.11264 0.90954 1.20763 0.97598 1.00380 0.94628 1.21723 0.95057 1.02063 1.01640 0.92672 0.91557 0.94018 0.92430 0.87670 0.85686 0.75952 0.86297 0.86693 0.86439 0.92089 0.85315 0.90398 0.90730 0.92294 0.92300 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.33 37.16 0.35 -1.14 16 2 C -0.10 -1.14 5.36 -27.89 -0.15 -1.29 16 3 C -0.02 -0.24 4.62 -101.17 -0.47 -0.71 16 4 C -0.23 -2.53 9.61 -37.82 -0.36 -2.90 16 5 C 0.54 8.03 7.20 -12.68 -0.09 7.94 16 6 O -0.52 -8.87 8.91 5.25 0.05 -8.83 16 7 N -0.67 -10.31 5.33 -10.95 -0.06 -10.36 16 8 C 0.18 3.54 6.27 -83.74 -0.53 3.02 16 9 C -0.20 -3.95 8.65 -39.34 -0.34 -4.29 16 10 C -0.06 -1.21 10.03 -39.64 -0.40 -1.61 16 11 C -0.20 -4.39 9.99 -39.35 -0.39 -4.78 16 12 C 0.17 4.13 6.65 -39.14 -0.26 3.87 16 13 O -0.18 -5.08 9.76 0.09 0.00 -5.08 16 14 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 15 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 16 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.36 13.67 55.48 0.76 -24.60 16 18 Si 0.94 20.46 29.55 -169.99 -5.02 15.44 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 C -0.26 -5.66 9.08 -39.20 -0.36 -6.02 16 23 C -0.10 -0.70 6.07 -27.88 -0.17 -0.87 16 24 C -0.15 -0.98 9.89 37.16 0.37 -0.61 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.89 6.31 -51.93 -0.33 0.56 16 27 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.11 1.46 5.87 -51.93 -0.30 1.15 16 30 H 0.13 1.08 8.05 -52.49 -0.42 0.66 16 31 H 0.41 5.04 8.80 -40.82 -0.36 4.68 16 32 H 0.12 2.21 6.41 -52.48 -0.34 1.87 16 33 H 0.12 1.83 8.06 -52.49 -0.42 1.40 16 34 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.13 2.78 5.63 -52.49 -0.30 2.48 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.48 8.03 -51.93 -0.42 0.06 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -32.00 341.94 -7.40 -39.39 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.67 Total: 7.95 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -2.60 Total: -19.06 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.70 Total: -34.96 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.05 Total: -13.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.00 -7.40 -39.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268404872.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.223 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds