Wall clock time and date at job start Tue Mar 31 2020 06:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99886 * 2 1 4 4 C 1.52997 * 109.47438 * 0.02562 * 3 2 1 5 5 C 1.52995 * 109.47174 * 240.00390 * 3 2 1 6 6 C 1.53005 * 109.47213 * 299.99961 * 5 3 2 7 7 C 1.50701 * 109.46904 * 119.99978 * 3 2 1 8 8 O 1.21282 * 120.00406 * 0.02562 * 7 3 2 9 9 N 1.34777 * 120.00037 * 179.97438 * 7 3 2 10 10 C 1.39917 * 120.00345 * 174.66798 * 9 7 3 11 11 C 1.38961 * 120.04101 * 146.61211 * 10 9 7 12 12 C 1.38152 * 120.07349 * 179.97438 * 11 10 9 13 13 C 1.38174 * 120.13710 * 359.74756 * 12 11 10 14 14 C 1.38910 * 120.06691 * 0.50877 * 13 12 11 15 15 O 1.35748 * 120.03041 * 179.76834 * 14 13 12 16 16 C 1.34823 * 117.00384 * 353.89888 * 15 14 13 17 17 H 1.08004 * 120.00112 * 354.60515 * 16 15 14 18 18 C 1.38654 * 120.00347 * 174.60338 * 16 15 14 19 19 N 1.31555 * 119.99704 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00087 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47136 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46864 * 120.00268 * 20 18 16 23 23 H 1.48494 * 109.47315 * 240.00021 * 20 18 16 24 24 C 1.38716 * 120.03677 * 326.59218 * 10 9 7 25 25 H 1.07996 * 120.00103 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00023 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.00023 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47505 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.47131 * 300.00294 * 4 3 2 30 30 H 1.08999 * 109.47142 * 59.99750 * 4 3 2 31 31 H 1.08998 * 109.47566 * 60.00012 * 5 3 2 32 32 H 1.09003 * 109.47345 * 180.02562 * 5 3 2 33 33 H 1.08997 * 109.47086 * 59.99849 * 6 5 3 34 34 H 1.08999 * 109.47448 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.46896 * 300.00461 * 6 5 3 36 36 H 0.97006 * 119.99588 * 354.66699 * 9 7 3 37 37 H 1.08006 * 119.96496 * 359.95820 * 11 10 9 38 38 H 1.07999 * 119.93512 * 180.02562 * 12 11 10 39 39 H 1.07995 * 119.96427 * 180.25376 * 13 12 11 40 40 H 0.97004 * 119.99936 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.06523 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0693 2.4681 0.0006 5 6 2.9430 1.3862 -1.2492 6 6 3.9373 0.2233 -1.2494 7 6 2.9299 1.3849 1.2305 8 8 2.9354 0.4717 2.0286 9 7 3.6995 2.4707 1.4436 10 6 4.4177 2.5958 2.6378 11 6 5.6541 3.2299 2.6428 12 6 6.3636 3.3543 3.8217 13 6 5.8442 2.8534 5.0001 14 6 4.6112 2.2137 5.0008 15 8 4.1038 1.7178 6.1581 16 6 4.8994 1.7657 7.2455 17 1 5.9208 2.1041 7.1528 18 6 4.4064 1.3805 8.4828 19 7 3.1623 0.9677 8.5957 20 14 5.5090 1.4462 9.9893 21 1 6.8530 1.9417 9.5978 22 1 4.9174 2.3638 10.9960 23 1 5.6328 0.0859 10.5718 24 6 3.8961 2.0872 3.8183 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.6143 3.4120 0.0002 29 1 0.4423 2.4105 -0.8891 30 1 0.4430 2.4101 0.8908 31 1 2.3164 1.3285 -2.1392 32 1 3.4884 2.3300 -1.2490 33 1 3.3924 -0.7206 -1.2493 34 1 4.5643 0.2813 -2.1391 35 1 4.5640 0.2810 -0.3594 36 1 3.7554 3.1654 0.7689 37 1 6.0611 3.6259 1.7240 38 1 7.3242 3.8479 3.8231 39 1 6.3994 2.9558 5.9208 40 1 2.8172 0.6986 9.4614 41 1 2.9354 1.5938 3.8170 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276203771.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:33 Heat of formation + Delta-G solvation = -20.311079 kcal Electronic energy + Delta-G solvation = -22822.085070 eV Core-core repulsion = 19475.359833 eV Total energy + Delta-G solvation = -3346.725237 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65866 -38.83844 -37.11441 -36.12718 -34.09923 -32.26188 -32.17279 -29.95319 -29.31674 -28.21742 -25.37475 -25.03321 -23.14427 -22.32317 -21.49187 -20.44475 -18.60047 -18.14257 -17.24317 -16.61777 -15.97468 -15.55207 -15.04630 -15.03218 -14.64475 -14.28663 -14.17565 -13.85261 -13.54922 -13.33842 -12.83560 -12.66557 -12.53677 -12.35219 -12.11767 -11.99881 -11.71934 -11.54687 -11.44378 -11.13960 -11.06773 -10.98728 -10.70506 -10.65361 -10.41878 -9.75234 -9.70083 -9.44317 -9.12096 -8.79427 -7.64908 -7.16072 -6.40077 -3.99025 2.00832 2.20130 2.36617 2.93046 3.16174 3.16349 3.22471 3.35689 4.00802 4.37210 4.51597 4.60590 4.69864 4.87993 5.05099 5.15752 5.18204 5.34289 5.36895 5.39916 5.44449 5.64327 5.66093 5.72303 5.79382 5.84451 5.86088 6.00395 6.12446 6.14267 6.25468 6.39671 6.54027 6.67430 6.73780 6.91619 7.06047 7.10899 7.36646 7.49860 7.73329 7.82426 8.04913 8.41008 9.05036 9.76730 10.78028 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022406 B = 0.003860 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.378500 B = 7252.897789 C = 8041.295532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.122 4.122 3 C -0.052 4.052 4 C -0.145 4.145 5 C -0.106 4.106 6 C -0.160 4.160 7 C 0.521 3.479 8 O -0.504 6.504 9 N -0.669 5.669 10 C 0.179 3.821 11 C -0.237 4.237 12 C -0.058 4.058 13 C -0.246 4.246 14 C 0.168 3.832 15 O -0.174 6.174 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.038 3.962 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.188 4.188 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.403 0.597 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.269 0.731 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 3.763 -19.323 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.141 4.141 3 C -0.055 4.055 4 C -0.203 4.203 5 C -0.144 4.144 6 C -0.217 4.217 7 C 0.307 3.693 8 O -0.376 6.376 9 N -0.314 5.314 10 C 0.086 3.914 11 C -0.258 4.258 12 C -0.077 4.077 13 C -0.265 4.265 14 C 0.113 3.887 15 O -0.077 6.077 16 C -0.467 4.467 17 H 0.110 0.890 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.210 4.210 25 H 0.118 0.882 26 H 0.121 0.879 27 H 0.134 0.866 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.239 0.761 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.079 0.921 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.288 2.882 -18.513 18.780 hybrid contribution 0.661 0.394 0.481 0.907 sum -0.627 3.276 -18.032 18.338 Atomic orbital electron populations 1.23958 0.95852 1.02225 1.01023 1.22492 0.95549 0.96648 0.99374 1.19983 0.95512 0.96178 0.93844 1.21959 0.98849 0.96251 1.03215 1.21558 0.97245 0.99570 0.96001 1.21874 0.99103 0.98564 1.02133 1.20459 0.79837 0.81771 0.87254 1.90794 1.63799 1.36822 1.46215 1.43430 1.46703 1.22676 1.18630 1.17175 0.91040 0.98946 0.84263 1.20254 0.95318 1.11898 0.98341 1.20503 0.97961 0.97344 0.91884 1.21177 0.98792 1.07547 0.99017 1.19127 0.91497 0.90514 0.87553 1.84001 1.40979 1.68572 1.14175 1.21388 0.94628 1.46262 0.84412 0.88984 1.25305 0.96658 0.96434 0.98184 1.70065 1.14095 1.40223 1.25175 0.85642 0.79244 0.78315 0.80180 1.19078 1.20171 1.20148 1.20009 1.02562 1.09329 0.89082 0.88220 0.87938 0.86643 0.91801 0.90970 0.91354 0.90576 0.91351 0.92020 0.92333 0.92356 0.76138 0.87441 0.87076 0.85466 0.92092 0.85424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 13.70 29.01 0.40 -1.63 16 2 C -0.12 -1.45 7.29 -36.03 -0.26 -1.72 16 3 C -0.05 -0.58 0.63 -156.82 -0.10 -0.68 16 4 C -0.15 -1.32 7.03 37.16 0.26 -1.06 16 5 C -0.11 -0.91 4.88 -26.73 -0.13 -1.04 16 6 C -0.16 -1.56 9.41 37.16 0.35 -1.21 16 7 C 0.52 8.18 4.94 -10.98 -0.05 8.13 16 8 O -0.50 -10.52 13.73 5.56 0.08 -10.45 16 9 N -0.67 -9.87 5.12 -9.88 -0.05 -9.92 16 10 C 0.18 3.40 6.27 -83.72 -0.53 2.88 16 11 C -0.24 -4.12 9.96 -39.35 -0.39 -4.51 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.47 16 13 C -0.25 -5.50 9.13 -39.36 -0.36 -5.86 16 14 C 0.17 4.31 6.64 -39.14 -0.26 4.05 16 15 O -0.17 -5.23 9.75 0.07 0.00 -5.23 16 16 C -0.39 -11.28 9.44 30.89 0.29 -10.98 16 17 H 0.09 2.45 5.30 -52.48 -0.28 2.17 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -26.02 13.67 55.48 0.76 -25.27 16 20 Si 0.94 20.98 29.55 -169.99 -5.02 15.96 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.19 -4.43 8.60 -39.21 -0.34 -4.77 16 25 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 26 H 0.10 0.95 5.69 -52.49 -0.30 0.65 16 27 H 0.12 1.45 7.00 -52.49 -0.37 1.08 16 28 H 0.06 0.49 7.69 -51.93 -0.40 0.10 16 29 H 0.07 0.51 7.50 -51.93 -0.39 0.12 16 30 H 0.07 0.72 7.50 -51.93 -0.39 0.33 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.49 7.45 -51.93 -0.39 0.10 16 33 H 0.06 0.61 6.62 -51.93 -0.34 0.26 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.72 7.22 -51.93 -0.37 0.34 16 36 H 0.40 4.32 7.68 -40.82 -0.31 4.00 16 37 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 38 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.13 2.83 5.71 -52.49 -0.30 2.53 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 3.23 6.42 -52.49 -0.34 2.89 16 LS Contribution 337.14 15.07 5.08 5.08 Total: -1.00 -34.35 337.14 -6.20 -40.54 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.43 Total: 8.17 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -1.61 Total: -18.89 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.71 Total: -35.19 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.35 -6.20 -40.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276203771.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.234 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds