Wall clock time and date at job start Tue Mar 31 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52999 * 110.64090 * 2 1 4 4 C 1.54325 * 110.71682 * 123.13623 * 2 1 3 5 5 N 1.47021 * 107.26990 * 140.55327 * 4 2 1 6 6 C 1.34773 * 125.65255 * 181.02048 * 5 4 2 7 7 O 1.21555 * 119.99554 * 357.03972 * 6 5 4 8 8 C 1.47880 * 120.00433 * 177.03639 * 6 5 4 9 9 C 1.39917 * 120.02546 * 26.40911 * 8 6 5 10 10 C 1.38333 * 120.36075 * 180.27930 * 9 8 6 11 11 C 1.37748 * 120.40824 * 359.69879 * 10 9 8 12 12 C 1.40747 * 120.04355 * 0.02806 * 11 10 9 13 13 C 1.41435 * 120.17956 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00084 * 335.00962 * 13 12 11 15 15 C 1.39942 * 119.99944 * 155.01580 * 13 12 11 16 16 N 1.30828 * 120.00148 * 343.27168 * 15 13 12 17 17 Si 1.86800 * 119.99776 * 163.27712 * 15 13 12 18 18 H 1.48495 * 109.47355 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47446 * 120.00175 * 17 15 13 20 20 H 1.48506 * 109.46874 * 239.99598 * 17 15 13 21 21 C 1.38992 * 120.02553 * 206.13138 * 8 6 5 22 22 C 1.47432 * 108.70149 * 1.29286 * 5 4 2 23 23 C 1.55128 * 104.71909 * 335.54874 * 22 5 4 24 24 H 1.09005 * 111.19426 * 279.19200 * 23 22 5 25 25 O 1.42898 * 110.93832 * 155.29468 * 23 22 5 26 26 H 1.09000 * 109.47180 * 298.31906 * 1 2 3 27 27 H 1.09003 * 109.46370 * 58.31621 * 1 2 3 28 28 H 1.08994 * 109.46821 * 178.31356 * 1 2 3 29 29 H 1.09001 * 109.47299 * 181.69025 * 3 2 1 30 30 H 1.09006 * 109.46753 * 301.68096 * 3 2 1 31 31 H 1.08999 * 109.47382 * 61.68387 * 3 2 1 32 32 H 1.08999 * 109.88241 * 21.14004 * 4 2 1 33 33 H 1.08989 * 109.88382 * 259.97460 * 4 2 1 34 34 H 1.08003 * 119.82215 * 359.97438 * 9 8 6 35 35 H 1.07996 * 119.79719 * 179.72743 * 10 9 8 36 36 H 1.08004 * 119.98041 * 180.02562 * 11 10 9 37 37 H 0.96999 * 119.99933 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.20417 * 0.03215 * 21 8 6 39 39 H 1.08997 * 110.36961 * 94.47550 * 22 5 4 40 40 H 1.09003 * 110.36450 * 216.80263 * 22 5 4 41 41 H 0.96700 * 114.00648 * 67.95159 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0694 1.4318 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 3.2445 -1.5495 0.7418 6 6 3.9923 -2.3810 1.4940 7 8 3.7521 -2.5105 2.6785 8 6 5.1049 -3.1359 0.8783 9 6 5.7450 -2.6350 -0.2606 10 6 6.7828 -3.3382 -0.8456 11 6 7.2021 -4.5362 -0.3103 12 6 6.5742 -5.0530 0.8384 13 6 7.0021 -6.2830 1.3901 14 1 7.4932 -7.0137 0.7645 15 6 6.7890 -6.5533 2.7465 16 7 6.5040 -5.5783 3.5709 17 14 6.9116 -8.3064 3.3800 18 1 7.2428 -9.2173 2.2549 19 1 7.9763 -8.3865 4.4121 20 1 5.6127 -8.7091 3.9765 21 6 5.5195 -4.3405 1.4340 22 6 3.4666 -1.2467 -0.6839 23 6 2.0790 -0.7975 -1.2123 24 1 1.4452 -1.6561 -1.4346 25 8 2.2172 0.0440 -2.3589 26 1 -0.3633 0.4875 0.9047 27 1 -0.3632 0.5398 -0.8746 28 1 -0.3633 -1.0272 -0.0302 29 1 3.1588 1.4097 -0.0303 30 1 1.6924 1.9620 -0.8746 31 1 1.7414 1.9437 0.9047 32 1 1.3129 -1.4730 1.5802 33 1 2.3740 -0.0989 1.9979 34 1 5.4239 -1.6967 -0.6883 35 1 7.2675 -2.9454 -1.7270 36 1 8.0133 -5.0792 -0.7724 37 1 6.3566 -5.7657 4.5112 38 1 5.0310 -4.7290 2.3154 39 1 4.1947 -0.4429 -0.7920 40 1 3.8032 -2.1383 -1.2130 41 1 2.5573 -0.4105 -3.1418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279408367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:44 Heat of formation + Delta-G solvation = -60.849893 kcal Electronic energy + Delta-G solvation = -23217.286718 eV Core-core repulsion = 19868.803587 eV Total energy + Delta-G solvation = -3348.483131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.27562 -38.27818 -36.92150 -35.52714 -33.96732 -33.32103 -30.22925 -29.48454 -28.58532 -27.43915 -26.50421 -25.20133 -23.33487 -21.66495 -20.90082 -19.26719 -18.97924 -17.56541 -17.43980 -16.09301 -15.70134 -15.22243 -14.94731 -14.87901 -14.40910 -14.14870 -13.82641 -13.34323 -13.22749 -12.95930 -12.82428 -12.62399 -12.27852 -12.21595 -12.12462 -11.88283 -11.65296 -11.21421 -11.19075 -11.11174 -10.92626 -10.73857 -10.54665 -10.39499 -10.05686 -10.04893 -9.63086 -9.25116 -8.99236 -8.31588 -7.64033 -7.51617 -6.79451 -4.43047 2.23858 2.78477 3.06847 3.11334 3.13319 3.28466 3.75038 3.90836 4.07196 4.29792 4.49429 4.60646 4.78116 5.03491 5.20540 5.24889 5.43152 5.54387 5.57113 5.63236 5.72682 5.77207 5.82170 5.88431 5.91836 6.02555 6.09613 6.10841 6.30221 6.30714 6.56912 6.74299 6.97415 7.02784 7.20030 7.36609 7.47297 7.66070 7.77629 7.88353 8.00913 8.15428 8.48794 8.78773 8.81341 8.87047 10.14637 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025870 B = 0.004149 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.072908 B = 6746.985527 C = 7406.630117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.069 4.069 3 C -0.126 4.126 4 C 0.117 3.883 5 N -0.618 5.618 6 C 0.579 3.421 7 O -0.539 6.539 8 C -0.122 4.122 9 C -0.231 4.231 10 C -0.099 4.099 11 C -0.211 4.211 12 C 0.100 3.900 13 C -0.461 4.461 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.782 5.782 17 Si 0.910 3.090 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.096 4.096 22 C 0.072 3.928 23 C 0.094 3.906 24 H 0.074 0.926 25 O -0.553 6.553 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.131 0.869 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.962 8.414 -8.494 14.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.070 4.070 3 C -0.184 4.184 4 C -0.006 4.006 5 N -0.355 5.355 6 C 0.372 3.628 7 O -0.416 6.416 8 C -0.125 4.125 9 C -0.251 4.251 10 C -0.117 4.117 11 C -0.231 4.231 12 C 0.098 3.902 13 C -0.490 4.490 14 H 0.099 0.901 15 C -0.147 4.147 16 N -0.407 5.407 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.116 4.116 22 C -0.051 4.051 23 C 0.034 3.966 24 H 0.092 0.908 25 O -0.358 6.358 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.149 0.851 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.313 8.783 -7.107 14.642 hybrid contribution 0.421 -1.117 0.021 1.194 sum -8.892 7.666 -7.086 13.713 Atomic orbital electron populations 1.21781 0.93029 1.02138 1.02315 1.21639 0.96146 0.96251 0.92951 1.21619 1.01230 0.93859 1.01659 1.22010 0.88213 0.94479 0.95930 1.48178 1.30578 1.45892 1.10850 1.18686 0.81332 0.77379 0.85386 1.90727 1.70441 1.65111 1.15348 1.19376 0.97522 0.97657 0.97947 1.20867 1.03027 1.01867 0.99347 1.20454 0.96950 0.95705 0.98583 1.21113 1.02674 0.97544 1.01795 1.17581 0.89494 0.92437 0.90729 1.19619 1.34113 1.01217 0.94017 0.90057 1.25978 0.92643 0.99038 0.97033 1.69808 1.32742 1.32984 1.05139 0.86238 0.78789 0.82259 0.79350 1.18344 1.19879 1.19608 1.21575 0.96498 0.93610 0.99958 1.23358 0.97151 1.01761 0.82874 1.23151 0.95273 0.92324 0.85852 0.90796 1.86479 1.88356 1.39360 1.21568 0.92102 0.91820 0.92363 0.92411 0.91608 0.92752 0.91424 0.91328 0.87750 0.88924 0.88650 0.90462 0.85131 0.90689 0.88703 0.77258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.48 37.16 0.32 -0.96 16 2 C -0.07 -0.79 0.86 -152.67 -0.13 -0.92 16 3 C -0.13 -1.38 7.91 37.16 0.29 -1.09 16 4 C 0.12 1.71 6.05 -3.06 -0.02 1.69 16 5 N -0.62 -10.86 3.32 -171.48 -0.57 -11.43 16 6 C 0.58 13.15 7.65 -12.31 -0.09 13.06 16 7 O -0.54 -14.05 16.95 5.32 0.09 -13.96 16 8 C -0.12 -2.91 5.70 -105.04 -0.60 -3.51 16 9 C -0.23 -4.86 7.95 -38.92 -0.31 -5.17 16 10 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 11 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 12 C 0.10 2.64 5.57 -106.87 -0.60 2.05 16 13 C -0.46 -12.09 9.06 -37.73 -0.34 -12.43 16 14 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 15 C 0.07 1.83 5.16 -17.34 -0.09 1.74 16 16 N -0.78 -20.95 10.92 55.55 0.61 -20.35 16 17 Si 0.91 18.74 29.59 -169.99 -5.03 13.71 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 21 C -0.10 -2.58 8.23 -38.44 -0.32 -2.89 16 22 C 0.07 1.01 4.43 -2.41 -0.01 1.00 16 23 C 0.09 1.05 3.67 -24.47 -0.09 0.96 16 24 H 0.07 0.79 8.04 -51.93 -0.42 0.38 16 25 O -0.55 -5.40 12.33 -35.23 -0.43 -5.83 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 29 H 0.06 0.69 7.44 -51.93 -0.39 0.31 16 30 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 33 H 0.07 1.03 7.84 -51.94 -0.41 0.63 16 34 H 0.10 1.87 4.47 -52.48 -0.23 1.63 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 36 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.28 6.98 8.30 -40.82 -0.34 6.65 16 38 H 0.13 3.78 5.95 -52.49 -0.31 3.47 16 39 H 0.08 1.03 6.84 -51.93 -0.36 0.68 16 40 H 0.09 1.37 6.15 -51.93 -0.32 1.05 16 41 H 0.38 2.24 9.12 45.56 0.42 2.65 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -30.98 331.21 -8.02 -39.00 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.91 Total: 8.19 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.76 Total: -14.33 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.04 Total: -31.78 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.34 Total: -19.79 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.98 -8.02 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279408367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.847 kcal (2) G-P(sol) polarization free energy of solvation -30.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds