Wall clock time and date at job start Tue Mar 31 2020 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 110.63867 * 2 1 4 4 C 1.54329 * 110.71725 * 123.13499 * 2 1 3 5 5 N 1.47029 * 107.26526 * 140.56228 * 4 2 1 6 6 C 1.34773 * 125.64380 * 181.02146 * 5 4 2 7 7 O 1.21587 * 119.99934 * 174.02456 * 6 5 4 8 8 C 1.47640 * 120.00222 * 354.30551 * 6 5 4 9 9 C 1.40010 * 119.89475 * 7.27541 * 8 6 5 10 10 C 1.36322 * 120.10646 * 179.71976 * 9 8 6 11 11 C 1.40895 * 119.88968 * 0.57746 * 10 9 8 12 12 C 1.41109 * 120.10252 * 179.67624 * 11 10 9 13 13 H 1.08003 * 119.99561 * 183.10008 * 12 11 10 14 14 C 1.40223 * 120.00151 * 3.10174 * 12 11 10 15 15 N 1.30645 * 120.00060 * 324.03447 * 14 12 11 16 16 Si 1.86801 * 120.00215 * 144.03159 * 14 12 11 17 17 H 1.48500 * 109.47072 * 94.99882 * 16 14 12 18 18 H 1.48494 * 109.47284 * 215.00104 * 16 14 12 19 19 H 1.48508 * 109.46871 * 335.00169 * 16 14 12 20 20 C 1.40891 * 119.79355 * 359.69087 * 11 10 9 21 21 C 1.36320 * 119.88989 * 0.02562 * 20 11 10 22 22 C 1.47420 * 108.70516 * 1.28659 * 5 4 2 23 23 C 1.55132 * 104.72254 * 335.55304 * 22 5 4 24 24 H 1.09002 * 110.90526 * 155.27407 * 23 22 5 25 25 O 1.42896 * 111.19581 * 279.19131 * 23 22 5 26 26 H 1.09001 * 109.47185 * 298.31295 * 1 2 3 27 27 H 1.08991 * 109.46746 * 58.31594 * 1 2 3 28 28 H 1.08999 * 109.46453 * 178.31190 * 1 2 3 29 29 H 1.08996 * 109.47267 * 181.68301 * 3 2 1 30 30 H 1.08997 * 109.47017 * 301.68618 * 3 2 1 31 31 H 1.09003 * 109.47188 * 61.68779 * 3 2 1 32 32 H 1.08999 * 109.88513 * 21.14731 * 4 2 1 33 33 H 1.08998 * 110.01017 * 260.04324 * 4 2 1 34 34 H 1.07992 * 119.94815 * 359.97415 * 9 8 6 35 35 H 1.07997 * 120.05756 * 180.26968 * 10 9 8 36 36 H 0.97002 * 120.00088 * 180.02562 * 15 14 12 37 37 H 1.07992 * 120.05298 * 179.97438 * 20 11 10 38 38 H 1.07996 * 119.94297 * 179.97438 * 21 20 11 39 39 H 1.08998 * 110.36665 * 94.48365 * 22 5 4 40 40 H 1.08998 * 110.36989 * 216.80591 * 22 5 4 41 41 H 0.96698 * 113.99840 * 292.18872 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7890 1.2088 5 7 3.2446 -1.5493 0.7418 6 6 3.9924 -2.3808 1.4941 7 8 4.8719 -3.0425 0.9775 8 6 3.7395 -2.4927 2.9443 9 6 2.6294 -1.8543 3.5105 10 6 2.3887 -1.9596 4.8481 11 6 3.2658 -2.7021 5.6631 12 6 3.0246 -2.8083 7.0494 13 1 3.7248 -3.3357 7.6804 14 6 1.8761 -2.2293 7.6076 15 7 1.4229 -1.0963 7.1408 16 14 0.9938 -3.0777 9.0187 17 1 1.4715 -2.5187 10.3089 18 1 -0.4689 -2.8543 8.8938 19 1 1.2775 -4.5348 8.9753 20 6 4.3847 -3.3381 5.0897 21 6 4.6139 -3.2319 3.7502 22 6 3.4667 -1.2466 -0.6838 23 6 2.0791 -0.7975 -1.2123 24 1 2.1851 -0.1554 -2.0867 25 8 1.2482 -1.9230 -1.5037 26 1 -0.3633 0.4874 0.9047 27 1 -0.3632 0.5397 -0.8744 28 1 -0.3632 -1.0273 -0.0303 29 1 3.1586 1.4098 -0.0302 30 1 1.6922 1.9621 -0.8745 31 1 1.7413 1.9437 0.9048 32 1 1.3130 -1.4731 1.5802 33 1 2.3736 -0.1008 1.9998 34 1 1.9606 -1.2811 2.8858 35 1 1.5297 -1.4704 5.2832 36 1 0.6285 -0.6955 7.5272 37 1 5.0600 -3.9080 5.7106 38 1 5.4715 -3.7187 3.3098 39 1 4.1948 -0.4427 -0.7919 40 1 3.8033 -2.1381 -1.2130 41 1 1.5516 -2.4521 -2.2541 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279488397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:48 Heat of formation + Delta-G solvation = -48.300233 kcal Electronic energy + Delta-G solvation = -23308.753815 eV Core-core repulsion = 19960.814878 eV Total energy + Delta-G solvation = -3347.938937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22629 -38.10210 -36.86122 -35.41363 -34.01670 -33.23063 -30.72604 -29.43315 -28.56518 -27.19704 -26.37282 -25.66921 -23.07318 -21.25343 -20.99773 -19.14467 -19.00398 -17.57053 -17.35567 -16.37185 -15.60835 -15.42324 -14.87951 -14.74337 -14.45097 -13.88169 -13.60707 -13.28527 -13.17553 -12.87005 -12.73769 -12.49279 -12.26666 -12.06864 -12.02077 -11.86435 -11.74814 -11.21034 -11.10743 -10.98695 -10.92417 -10.88916 -10.68154 -10.38818 -10.13091 -10.01024 -9.49944 -8.90331 -8.83595 -8.11696 -7.72732 -7.53668 -7.17015 -4.55141 2.32122 2.84221 2.91820 3.02410 3.14340 3.59197 3.67739 3.83385 3.97358 4.43628 4.51367 4.54412 4.84963 5.14906 5.18745 5.37682 5.58160 5.62414 5.66287 5.66820 5.77449 5.79352 5.92421 6.01517 6.04261 6.10476 6.17532 6.28517 6.40077 6.41788 6.69246 6.81904 6.89247 7.17618 7.26841 7.47356 7.57786 7.76060 7.93642 7.97157 8.05713 8.27061 8.44711 8.66384 8.85405 9.12913 9.66843 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.004489 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.330310 B = 6235.741044 C = 7144.932874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 C -0.138 4.138 4 C 0.115 3.885 5 N -0.619 5.619 6 C 0.587 3.413 7 O -0.579 6.579 8 C -0.296 4.296 9 C -0.093 4.093 10 C -0.218 4.218 11 C 0.116 3.884 12 C -0.434 4.434 13 H 0.087 0.913 14 C 0.082 3.918 15 N -0.742 5.742 16 Si 0.909 3.091 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.254 1.254 20 C -0.250 4.250 21 C -0.017 4.017 22 C 0.079 3.921 23 C 0.097 3.903 24 H 0.074 0.926 25 O -0.550 6.550 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.124 0.876 35 H 0.140 0.860 36 H 0.288 0.712 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.818 5.532 -10.410 12.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 C -0.195 4.195 4 C -0.008 4.008 5 N -0.354 5.354 6 C 0.386 3.614 7 O -0.462 6.462 8 C -0.300 4.300 9 C -0.111 4.111 10 C -0.237 4.237 11 C 0.113 3.887 12 C -0.460 4.460 13 H 0.105 0.895 14 C -0.143 4.143 15 N -0.364 5.364 16 Si 0.731 3.269 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.177 1.177 20 C -0.269 4.269 21 C -0.037 4.037 22 C -0.045 4.045 23 C 0.037 3.963 24 H 0.091 0.909 25 O -0.355 6.355 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.141 0.859 35 H 0.157 0.843 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.802 5.571 -10.080 12.478 hybrid contribution -0.001 -0.474 0.145 0.495 sum -4.803 5.097 -9.935 12.156 Atomic orbital electron populations 1.21616 0.92656 1.02954 1.01442 1.21781 0.97079 0.94846 0.93875 1.21818 1.01302 0.93913 1.02471 1.22571 0.88382 0.94548 0.95284 1.48123 1.30950 1.46570 1.09740 1.18403 0.79370 0.76721 0.86939 1.90617 1.34908 1.46080 1.74614 1.18759 1.04799 1.16099 0.90347 1.21834 0.96029 0.97071 0.96122 1.21625 1.03059 1.06388 0.92622 1.17778 0.89513 0.88231 0.93183 1.19879 1.04984 1.27603 0.93544 0.89530 1.26255 0.97025 0.92914 0.98100 1.69771 1.19097 1.11823 1.35673 0.86279 0.78761 0.81749 0.80101 1.19048 1.19479 1.17731 1.20530 1.01682 1.10429 0.94246 1.20295 0.96002 0.94143 0.93224 1.22823 0.96851 1.00767 0.84016 1.22998 0.89154 0.87631 0.96540 0.90876 1.86510 1.52395 1.41652 1.54955 0.92377 0.92653 0.91251 0.92172 0.92285 0.91345 0.90312 0.90347 0.85896 0.84320 0.90013 0.88706 0.88491 0.91521 0.90618 0.77596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.44 8.19 37.16 0.30 -1.14 16 2 C -0.08 -0.91 0.86 -152.67 -0.13 -1.04 16 3 C -0.14 -1.40 8.44 37.16 0.31 -1.08 16 4 C 0.11 1.84 4.04 -3.06 -0.01 1.82 16 5 N -0.62 -11.49 3.32 -177.49 -0.59 -12.08 16 6 C 0.59 13.60 7.80 -12.42 -0.10 13.51 16 7 O -0.58 -14.78 16.58 5.29 0.09 -14.69 16 8 C -0.30 -7.24 5.89 -104.73 -0.62 -7.85 16 9 C -0.09 -2.17 8.53 -39.61 -0.34 -2.50 16 10 C -0.22 -5.51 9.00 -39.27 -0.35 -5.87 16 11 C 0.12 3.04 5.74 -106.80 -0.61 2.43 16 12 C -0.43 -10.90 8.97 -37.75 -0.34 -11.24 16 13 H 0.09 2.08 8.04 -52.48 -0.42 1.66 16 14 C 0.08 1.89 5.08 -17.31 -0.09 1.80 16 15 N -0.74 -17.20 10.62 55.56 0.59 -16.61 16 16 Si 0.91 16.95 29.68 -169.99 -5.04 11.90 16 17 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 18 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.25 -4.82 7.11 56.52 0.40 -4.41 16 20 C -0.25 -6.29 9.73 -39.27 -0.38 -6.67 16 21 C -0.02 -0.43 9.52 -39.61 -0.38 -0.81 16 22 C 0.08 1.15 6.37 -2.41 -0.02 1.14 16 23 C 0.10 1.12 3.66 -24.46 -0.09 1.03 16 24 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 25 O -0.55 -6.63 12.12 -35.23 -0.43 -7.06 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.88 7.30 -51.93 -0.38 0.50 16 29 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.36 6.40 -51.93 -0.33 1.03 16 33 H 0.08 1.30 6.44 -51.93 -0.33 0.96 16 34 H 0.12 2.50 2.70 -60.14 -0.16 2.34 16 35 H 0.14 3.50 5.14 -52.49 -0.27 3.23 16 36 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 37 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.10 2.35 7.65 -52.49 -0.40 1.94 16 39 H 0.07 0.90 7.71 -51.93 -0.40 0.50 16 40 H 0.08 1.15 7.98 -51.93 -0.41 0.73 16 41 H 0.38 3.05 9.12 45.56 0.42 3.46 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -30.56 328.33 -8.02 -38.59 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.75 Total: 11.49 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.83 Total: -16.48 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: 0.00 Total: -28.69 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.34 Total: -21.75 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.04 Total: 11.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.56 -8.02 -38.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279488397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.714 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds