Wall clock time and date at job start Tue Mar 31 2020 06:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47609 * 2 1 4 4 C 1.53001 * 113.27960 * 46.93544 * 3 2 1 5 5 C 1.53497 * 114.20836 * 180.02562 * 3 2 1 6 6 N 1.47069 * 87.98445 * 87.72179 * 5 3 2 7 7 C 1.34777 * 136.05128 * 207.08801 * 6 5 3 8 8 O 1.21584 * 120.00538 * 355.39088 * 7 6 5 9 9 C 1.47535 * 119.99501 * 175.39195 * 7 6 5 10 10 C 1.39672 * 120.19884 * 33.60283 * 9 7 6 11 11 C 1.37825 * 119.91727 * 180.02562 * 10 9 7 12 12 C 1.38568 * 120.32699 * 0.02562 * 11 10 9 13 13 C 1.38035 * 120.40076 * 359.67964 * 12 11 10 14 14 C 1.38834 * 120.06848 * 0.60033 * 13 12 11 15 15 O 1.35518 * 120.15820 * 179.69696 * 14 13 12 16 16 C 1.34820 * 117.00264 * 5.90000 * 15 14 13 17 17 H 1.08000 * 119.99397 * 354.92503 * 16 15 14 18 18 C 1.38690 * 119.99961 * 174.64279 * 16 15 14 19 19 N 1.31520 * 120.00139 * 180.27638 * 18 16 15 20 20 Si 1.86806 * 120.00197 * 0.28049 * 18 16 15 21 21 H 1.48497 * 109.47246 * 89.99894 * 20 18 16 22 22 H 1.48497 * 109.46967 * 210.00108 * 20 18 16 23 23 H 1.48502 * 109.46940 * 329.99613 * 20 18 16 24 24 C 1.47065 * 87.88720 * 27.33938 * 6 5 3 25 25 H 1.09007 * 109.47069 * 59.99420 * 1 2 3 26 26 H 1.09001 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46888 * 300.00104 * 1 2 3 28 28 H 1.09007 * 109.46563 * 240.00160 * 2 1 3 29 29 H 1.08998 * 109.47026 * 120.00832 * 2 1 3 30 30 H 1.09002 * 109.47215 * 193.06841 * 4 3 2 31 31 H 1.09000 * 109.47220 * 313.06718 * 4 3 2 32 32 H 1.08995 * 109.47397 * 73.06381 * 4 3 2 33 33 H 1.08995 * 113.46807 * 332.93479 * 5 3 2 34 34 H 1.09004 * 113.46621 * 202.49958 * 5 3 2 35 35 H 1.07993 * 120.03985 * 359.97438 * 10 9 7 36 36 H 1.07998 * 119.83684 * 180.02562 * 11 10 9 37 37 H 1.08008 * 119.80362 * 179.97438 * 12 11 10 38 38 H 1.07997 * 119.96413 * 180.29611 * 13 12 11 39 39 H 0.96998 * 120.00134 * 179.97438 * 19 18 16 40 40 H 1.09005 * 113.46560 * 87.43817 * 24 6 5 41 41 H 1.08990 * 113.46842 * 217.87910 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.3370 2.3324 1.0268 5 6 3.5698 1.5690 -0.0006 6 7 3.5225 1.5067 -1.4692 7 6 4.3559 1.1090 -2.4510 8 8 5.4859 0.7505 -2.1812 9 6 3.8968 1.1088 -3.8531 10 6 2.9961 2.0792 -4.2976 11 6 2.5707 2.0732 -5.6086 12 6 3.0319 1.1080 -6.4894 13 6 3.9269 0.1463 -6.0658 14 6 4.3619 0.1333 -4.7474 15 8 5.2358 -0.8137 -4.3281 16 6 5.7397 -1.6401 -5.2666 17 1 5.3818 -1.5837 -6.2840 18 6 6.7218 -2.5585 -4.9267 19 7 7.2173 -3.3610 -5.8434 20 14 7.3408 -2.6559 -3.1669 21 1 6.5170 -3.6288 -2.4055 22 1 8.7582 -3.0987 -3.1646 23 1 7.2394 -1.3174 -2.5318 24 6 2.1682 2.0753 -1.3954 25 1 -0.3633 0.5140 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5140 0.8899 30 1 1.5712 3.3773 0.8229 31 1 0.2594 2.1821 0.9606 32 1 1.6792 2.0721 2.0283 33 1 4.0761 0.7175 0.4539 34 1 3.9264 2.5254 0.3820 35 1 2.6328 2.8329 -3.6148 36 1 1.8745 2.8245 -5.9510 37 1 2.6926 1.1110 -7.5148 38 1 4.2854 -0.5997 -6.7595 39 1 7.9044 -4.0031 -5.6058 40 1 2.1553 3.1652 -1.3804 41 1 1.4804 1.6551 -2.1291 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291007361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:29 Heat of formation + Delta-G solvation = 0.410635 kcal Electronic energy + Delta-G solvation = -23395.012234 eV Core-core repulsion = 20049.185558 eV Total energy + Delta-G solvation = -3345.826676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68595 -39.27911 -37.37348 -36.50269 -33.64399 -32.44454 -30.96304 -29.65497 -29.21539 -26.85284 -26.07295 -25.25021 -23.93468 -22.59638 -21.29428 -19.48861 -18.48592 -17.92446 -17.34998 -16.43958 -15.78211 -15.66083 -14.88924 -14.77542 -14.45116 -14.36557 -13.95795 -13.77401 -13.65639 -13.25157 -12.84242 -12.64817 -12.41168 -12.35487 -12.17472 -12.06462 -11.88858 -11.59523 -11.40736 -11.22784 -11.00207 -10.83536 -10.75808 -10.71201 -10.18295 -10.05687 -9.60043 -9.10173 -8.89018 -8.43282 -8.33323 -7.47862 -6.46063 -4.11972 1.63766 2.18010 3.15263 3.30615 3.33424 3.45378 3.65621 4.08693 4.34479 4.42879 4.59192 4.72194 4.73614 5.00703 5.08619 5.11300 5.19299 5.36722 5.41684 5.43006 5.47994 5.50717 5.57795 5.62526 5.70070 5.75917 5.79714 5.83926 5.97115 6.05231 6.07087 6.11663 6.19137 6.34319 6.39853 6.59235 6.86800 7.02741 7.15707 7.48405 7.69472 7.95779 8.10093 8.79444 8.89482 9.50781 10.59422 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.015043 B = 0.005796 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.930466 B = 4829.907944 C = 5898.624814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.101 4.101 4 C -0.137 4.137 5 C 0.112 3.888 6 N -0.648 5.648 7 C 0.596 3.404 8 O -0.519 6.519 9 C -0.214 4.214 10 C -0.043 4.043 11 C -0.219 4.219 12 C -0.053 4.053 13 C -0.225 4.225 14 C 0.200 3.800 15 O -0.180 6.180 16 C -0.394 4.394 17 H 0.109 0.891 18 C 0.073 3.927 19 N -0.871 5.871 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.234 1.234 24 C 0.107 3.893 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.139 0.861 39 H 0.281 0.719 40 H 0.080 0.920 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.399 11.001 10.240 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.135 4.135 3 C -0.101 4.101 4 C -0.194 4.194 5 C -0.012 4.012 6 N -0.386 5.386 7 C 0.388 3.612 8 O -0.394 6.394 9 C -0.219 4.219 10 C -0.062 4.062 11 C -0.238 4.238 12 C -0.071 4.071 13 C -0.244 4.244 14 C 0.143 3.857 15 O -0.081 6.081 16 C -0.469 4.469 17 H 0.126 0.874 18 C -0.133 4.133 19 N -0.507 5.507 20 Si 0.714 3.286 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.157 1.157 24 C -0.016 4.016 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.156 0.844 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.304 10.448 10.358 19.835 hybrid contribution 0.363 -0.142 0.349 0.523 sum -12.942 10.306 10.707 19.706 Atomic orbital electron populations 1.21816 0.95505 1.01669 1.01807 1.21214 0.95831 0.93613 1.02883 1.22315 0.95280 0.96789 0.95745 1.21726 1.00878 0.98589 0.98223 1.22986 0.94769 1.01811 0.81584 1.49437 1.17698 1.64877 1.06588 1.17786 0.83397 0.76256 0.83726 1.90841 1.18188 1.47220 1.83131 1.18727 1.08687 1.01695 0.92746 1.20831 0.93643 0.95885 0.95795 1.20544 1.06625 1.02570 0.94064 1.20960 0.94397 0.93199 0.98580 1.21261 1.03582 1.03359 0.96244 1.18960 0.88557 0.86931 0.91229 1.83677 1.50081 1.37557 1.36826 1.20864 1.20894 1.13506 0.91647 0.87401 1.24457 0.94650 0.94383 0.99779 1.69630 1.27000 1.20241 1.33816 0.86355 0.77539 0.81434 0.83295 1.20057 1.20874 1.15675 1.23188 0.84239 0.98033 0.96164 0.92583 0.92747 0.92379 0.91123 0.91524 0.92302 0.91465 0.92103 0.90762 0.90367 0.86692 0.86998 0.86804 0.84382 0.90857 0.90179 0.90225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.27 37.16 0.34 -0.95 16 2 C -0.10 -1.05 5.53 -26.73 -0.15 -1.20 16 3 C -0.10 -1.01 1.19 -153.86 -0.18 -1.19 16 4 C -0.14 -0.97 8.96 37.16 0.33 -0.63 16 5 C 0.11 1.44 7.78 -8.50 -0.07 1.37 16 6 N -0.65 -10.58 3.48 -186.23 -0.65 -11.22 16 7 C 0.60 12.94 7.62 -12.47 -0.09 12.84 16 8 O -0.52 -13.70 16.67 -12.90 -0.21 -13.92 16 9 C -0.21 -4.55 5.80 -104.81 -0.61 -5.16 16 10 C -0.04 -0.73 8.69 -39.20 -0.34 -1.07 16 11 C -0.22 -3.49 10.02 -39.61 -0.40 -3.89 16 12 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 13 C -0.23 -4.84 9.16 -39.44 -0.36 -5.21 16 14 C 0.20 4.84 6.62 -38.60 -0.26 4.59 16 15 O -0.18 -5.06 7.19 -17.40 -0.13 -5.18 16 16 C -0.39 -11.44 9.95 30.90 0.31 -11.13 16 17 H 0.11 3.11 5.44 -52.49 -0.29 2.83 16 18 C 0.07 2.11 5.49 -17.52 -0.10 2.02 16 19 N -0.87 -25.60 13.96 55.48 0.77 -24.83 16 20 Si 0.89 23.26 28.62 -169.99 -4.86 18.39 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.23 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.11 1.22 5.46 -8.36 -0.05 1.18 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.41 6.35 -51.93 -0.33 0.08 16 28 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.37 7.89 -51.93 -0.41 -0.03 16 31 H 0.07 0.42 5.96 -51.93 -0.31 0.11 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 34 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 35 H 0.12 1.59 6.24 -52.49 -0.33 1.26 16 36 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 38 H 0.14 3.07 5.64 -52.49 -0.30 2.77 16 39 H 0.28 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 41 H 0.08 0.91 7.57 -51.93 -0.39 0.52 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -33.82 336.96 -7.70 -41.51 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.69 Total: -0.09 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -2.01 Total: -9.74 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.13 Total: -36.05 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.34 Total: -19.10 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.86 Total: 18.39 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.82 -7.70 -41.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291007361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.925 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds