Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99993 * 2 1 4 4 C 1.52997 * 109.47356 * 306.39056 * 3 2 1 5 5 C 1.50697 * 109.46967 * 186.38732 * 3 2 1 6 6 O 1.21280 * 119.99955 * 215.00273 * 5 3 2 7 7 N 1.34782 * 119.99989 * 35.00807 * 5 3 2 8 8 C 1.39230 * 120.00042 * 175.50613 * 7 5 3 9 9 C 1.39484 * 119.83498 * 36.27320 * 8 7 5 10 10 C 1.36374 * 120.17021 * 179.72615 * 9 8 7 11 11 C 1.40878 * 119.82655 * 0.27732 * 10 9 8 12 12 C 1.41155 * 120.16192 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99410 * 210.56811 * 12 11 10 14 14 C 1.39903 * 119.99944 * 30.56337 * 12 11 10 15 15 N 1.30872 * 120.00309 * 13.22030 * 14 12 11 16 16 Si 1.86801 * 119.99824 * 193.21775 * 14 12 11 17 17 H 1.48495 * 109.47306 * 60.00151 * 16 14 12 18 18 H 1.48499 * 109.47021 * 180.02562 * 16 14 12 19 19 H 1.48512 * 109.46982 * 300.00094 * 16 14 12 20 20 C 1.40863 * 119.67261 * 359.97438 * 11 10 9 21 21 C 1.36373 * 119.83070 * 0.02562 * 20 11 10 22 22 C 1.52999 * 109.46564 * 66.38975 * 3 2 1 23 23 C 1.52999 * 117.50357 * 7.19279 * 22 3 2 24 24 C 1.52991 * 117.50397 * 298.53065 * 22 3 2 25 25 H 1.08998 * 109.47404 * 170.69283 * 1 2 3 26 26 H 1.09004 * 109.46603 * 290.68744 * 1 2 3 27 27 H 1.08992 * 109.47436 * 50.68571 * 1 2 3 28 28 H 1.09003 * 109.46859 * 300.00302 * 4 3 2 29 29 H 1.09006 * 109.46878 * 59.99617 * 4 3 2 30 30 H 1.08996 * 109.47359 * 180.02562 * 4 3 2 31 31 H 0.97001 * 119.99976 * 355.49596 * 7 5 3 32 32 H 1.08000 * 119.91482 * 0.02562 * 9 8 7 33 33 H 1.07999 * 120.08721 * 180.29338 * 10 9 8 34 34 H 0.97000 * 119.99961 * 179.97438 * 15 14 12 35 35 H 1.08003 * 120.08987 * 180.02562 * 20 11 10 36 36 H 1.08000 * 119.91864 * 180.02562 * 21 20 11 37 37 H 1.09001 * 115.54457 * 152.86232 * 22 3 2 38 38 H 1.08999 * 117.49711 * 0.02562 * 23 22 3 39 39 H 1.08997 * 117.49659 * 145.01896 * 23 22 3 40 40 H 1.08997 * 117.50170 * 214.98801 * 24 22 3 41 41 H 1.09005 * 117.49905 * 359.97438 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.4359 2.1195 -1.1612 5 6 3.5045 1.1901 -0.1581 6 8 4.2365 1.9733 0.4090 7 7 4.0273 0.2165 -0.9297 8 6 5.4009 0.1661 -1.1514 9 6 6.2822 0.5184 -0.1292 10 6 7.6290 0.4662 -0.3372 11 6 8.1294 0.0607 -1.5901 12 6 9.5220 0.0035 -1.8129 13 1 9.9186 0.1844 -2.8010 14 6 10.3885 -0.2873 -0.7537 15 7 9.9124 -0.7571 0.3712 16 14 12.2252 -0.0053 -0.9451 17 1 12.4784 1.4295 -1.2320 18 1 12.9184 -0.3893 0.3107 19 1 12.7388 -0.8325 -2.0664 20 6 7.2330 -0.2885 -2.6191 21 6 5.8888 -0.2314 -2.3963 22 6 1.6898 2.0063 1.3218 23 6 1.0036 1.1800 2.4114 24 6 0.2163 2.2511 1.6526 25 1 -0.3634 -1.0141 -0.1662 26 1 -0.3633 0.3631 0.9615 27 1 -0.3634 0.6510 -0.7950 28 1 1.6641 1.6201 -2.1028 29 1 0.3551 2.2029 -1.0468 30 1 1.8796 3.1151 -1.1614 31 1 3.4466 -0.4492 -1.3304 32 1 5.8971 0.8287 0.8308 33 1 8.3102 0.7347 0.4567 34 1 10.5132 -0.9591 1.1054 35 1 7.6092 -0.6007 -3.5821 36 1 5.2003 -0.4992 -3.1841 37 1 2.4092 2.7607 1.6403 38 1 0.7808 0.1369 2.1867 39 1 1.2713 1.3911 3.4467 40 1 -0.0338 3.1664 2.1890 41 1 -0.5250 1.9133 0.9283 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292336438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = -14.363127 kcal Electronic energy + Delta-G solvation = -22987.792417 eV Core-core repulsion = 19641.325103 eV Total energy + Delta-G solvation = -3346.467314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73998 -38.85861 -37.09246 -35.65181 -34.35029 -32.87349 -31.47050 -29.47477 -28.90724 -27.75201 -25.11971 -24.00537 -22.42562 -21.99783 -21.21435 -20.28887 -19.49908 -17.77137 -17.26318 -16.85665 -16.16636 -15.73694 -15.20169 -14.84233 -14.63764 -14.05214 -13.77881 -13.57393 -13.29912 -12.96963 -12.74692 -12.53461 -12.38079 -12.09404 -11.95699 -11.77906 -11.55481 -11.37838 -11.08926 -11.06602 -11.00676 -10.67447 -10.49230 -10.29321 -9.86441 -9.68391 -9.60519 -9.32591 -9.04795 -8.79796 -7.50105 -6.92401 -6.67145 -4.28581 2.51013 2.98251 3.09951 3.11840 3.13422 3.30221 3.48633 3.74553 3.80421 3.97955 4.48308 4.67764 4.74191 4.78740 4.92360 5.00291 5.14763 5.18455 5.26469 5.39491 5.49571 5.54396 5.65091 5.73572 5.84168 5.93640 5.95017 6.15012 6.17935 6.42455 6.81852 6.90565 7.03673 7.07554 7.19738 7.31886 7.62588 7.71159 7.96965 8.08875 8.23949 8.35081 8.65533 8.78738 8.92137 9.03180 10.26975 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034343 B = 0.003460 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.118324 B = 8090.514481 C = 8466.793758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.370 6.370 3 C 0.131 3.869 4 C -0.172 4.172 5 C 0.523 3.477 6 O -0.523 6.523 7 N -0.636 5.636 8 C -0.004 4.004 9 C -0.086 4.086 10 C -0.149 4.149 11 C 0.109 3.891 12 C -0.464 4.464 13 H 0.077 0.923 14 C 0.074 3.926 15 N -0.798 5.798 16 Si 0.910 3.090 17 H -0.264 1.264 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.211 4.211 21 C -0.105 4.105 22 C -0.164 4.164 23 C -0.174 4.174 24 C -0.192 4.192 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.400 0.600 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.281 0.719 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.127 0.873 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.612 2.321 0.496 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.289 6.289 3 C 0.088 3.912 4 C -0.229 4.229 5 C 0.308 3.692 6 O -0.400 6.400 7 N -0.278 5.278 8 C -0.097 4.097 9 C -0.106 4.106 10 C -0.169 4.169 11 C 0.106 3.894 12 C -0.494 4.494 13 H 0.095 0.905 14 C -0.143 4.143 15 N -0.424 5.424 16 Si 0.734 3.266 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.231 4.231 21 C -0.125 4.125 22 C -0.183 4.183 23 C -0.211 4.211 24 C -0.229 4.229 25 H 0.103 0.897 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.235 0.765 32 H 0.123 0.877 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.145 0.855 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.907 2.626 1.125 17.147 hybrid contribution 0.333 -0.113 -0.210 0.410 sum -16.574 2.514 0.915 16.788 Atomic orbital electron populations 1.23488 0.81497 1.03044 1.01853 1.87998 1.19898 1.26103 1.94894 1.21127 0.91452 0.84119 0.94497 1.22324 1.01707 1.01427 0.97447 1.19735 0.87950 0.81348 0.80169 1.90702 1.59735 1.42809 1.46742 1.42913 1.07314 1.28097 1.49499 1.17243 0.80769 1.16404 0.95257 1.20533 0.93334 0.99912 0.96854 1.20941 0.93121 1.03811 0.99022 1.17664 0.93125 0.87411 0.91184 1.19482 0.91208 1.42724 0.95998 0.90489 1.25885 1.01405 0.92499 0.94488 1.69816 1.37755 1.30861 1.03968 0.86349 0.81851 0.79931 0.78428 1.18891 1.20387 1.19093 1.20600 0.92156 1.10257 1.00087 1.20071 0.95574 1.03227 0.93626 1.22776 0.96124 1.03689 0.95668 1.23166 1.03384 0.97522 0.97019 1.23411 0.94177 1.01123 1.04157 0.89675 0.91409 0.93175 0.91094 0.90915 0.90372 0.76526 0.87652 0.86575 0.90865 0.88547 0.89135 0.85534 0.87471 0.88647 0.88650 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 8.57 101.05 0.87 0.84 16 2 O -0.37 -4.65 8.79 -35.23 -0.31 -4.96 16 3 C 0.13 1.79 1.02 -91.78 -0.09 1.69 16 4 C -0.17 -1.91 7.88 37.16 0.29 -1.62 16 5 C 0.52 9.70 6.55 -10.98 -0.07 9.63 16 6 O -0.52 -11.59 13.26 5.56 0.07 -11.51 16 7 N -0.64 -12.05 5.24 -9.74 -0.05 -12.11 16 8 C 0.00 -0.10 6.29 -83.57 -0.53 -0.63 16 9 C -0.09 -2.21 8.61 -39.79 -0.34 -2.56 16 10 C -0.15 -4.07 8.59 -39.26 -0.34 -4.40 16 11 C 0.11 2.96 5.52 -106.80 -0.59 2.37 16 12 C -0.46 -12.50 9.03 -37.85 -0.34 -12.84 16 13 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 14 C 0.07 1.91 5.19 -17.34 -0.09 1.82 16 15 N -0.80 -21.22 11.10 55.55 0.62 -20.60 16 16 Si 0.91 19.06 29.58 -169.99 -5.03 14.04 16 17 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 C -0.21 -5.19 9.74 -39.26 -0.38 -5.58 16 21 C -0.10 -2.36 9.90 -39.79 -0.39 -2.75 16 22 C -0.16 -2.10 5.00 -90.63 -0.45 -2.55 16 23 C -0.17 -1.90 9.30 -26.70 -0.25 -2.15 16 24 C -0.19 -1.78 8.87 -26.70 -0.24 -2.01 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.53 3.50 -51.93 -0.18 0.35 16 27 H 0.05 0.37 5.72 -51.93 -0.30 0.07 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.62 5.40 -51.93 -0.28 0.34 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.40 6.46 8.19 -40.82 -0.33 6.12 16 32 H 0.11 2.72 6.29 -52.49 -0.33 2.39 16 33 H 0.12 3.28 6.45 -52.49 -0.34 2.94 16 34 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 35 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.13 1.86 7.29 -51.93 -0.38 1.48 16 38 H 0.11 1.16 5.67 -51.93 -0.29 0.87 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.78 4.85 -51.93 -0.25 0.53 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -30.32 325.68 -7.93 -38.25 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.19 Total: 12.73 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -2.95 Total: -20.74 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.57 Total: -32.71 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.24 Total: -16.47 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.32 -7.93 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292336438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.890 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds