Wall clock time and date at job start Tue Mar 31 2020 05:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00326 * 2 1 4 4 C 1.52996 * 109.47210 * 183.29702 * 3 2 1 5 5 C 1.50705 * 109.47196 * 303.29531 * 3 2 1 6 6 O 1.21272 * 119.99931 * 144.99973 * 5 3 2 7 7 N 1.34777 * 119.99906 * 325.00075 * 5 3 2 8 8 C 1.39232 * 120.00107 * 175.97299 * 7 5 3 9 9 C 1.39482 * 119.83463 * 216.00449 * 8 7 5 10 10 C 1.36372 * 120.16920 * 179.75767 * 9 8 7 11 11 C 1.40875 * 119.83008 * 0.51404 * 10 9 8 12 12 C 1.41149 * 120.16494 * 179.71867 * 11 10 9 13 13 H 1.08004 * 119.99697 * 159.02034 * 12 11 10 14 14 C 1.39906 * 120.00256 * 339.01711 * 12 11 10 15 15 N 1.30872 * 119.99921 * 327.37592 * 14 12 11 16 16 Si 1.86794 * 120.00111 * 147.37039 * 14 12 11 17 17 H 1.48504 * 109.47129 * 94.99080 * 16 14 12 18 18 H 1.48502 * 109.47475 * 214.99470 * 16 14 12 19 19 H 1.48501 * 109.47280 * 334.99553 * 16 14 12 20 20 C 1.40869 * 119.66627 * 359.74285 * 11 10 9 21 21 C 1.36369 * 119.83167 * 359.97438 * 20 11 10 22 22 C 1.53001 * 109.46927 * 63.29375 * 3 2 1 23 23 C 1.52994 * 117.51746 * 109.72107 * 22 3 2 24 24 C 1.52996 * 60.00206 * 107.47747 * 23 22 3 25 25 H 1.08992 * 109.47456 * 183.96445 * 1 2 3 26 26 H 1.08997 * 109.47148 * 303.96957 * 1 2 3 27 27 H 1.09003 * 109.47061 * 63.96737 * 1 2 3 28 28 H 1.09011 * 109.46599 * 300.00107 * 4 3 2 29 29 H 1.09003 * 109.47184 * 59.99499 * 4 3 2 30 30 H 1.09001 * 109.47413 * 180.02562 * 4 3 2 31 31 H 0.97007 * 119.99754 * 355.96907 * 7 5 3 32 32 H 1.07997 * 119.91402 * 0.02562 * 9 8 7 33 33 H 1.08001 * 120.08577 * 180.25585 * 10 9 8 34 34 H 0.97007 * 120.00132 * 179.97438 * 15 14 12 35 35 H 1.08010 * 120.07961 * 179.97438 * 20 11 10 36 36 H 1.08007 * 119.91578 * 179.97438 * 21 20 11 37 37 H 1.08999 * 115.55146 * 324.01923 * 22 3 2 38 38 H 1.08999 * 117.49748 * 214.97290 * 23 22 3 39 39 H 1.09007 * 117.49848 * 359.97438 * 23 22 3 40 40 H 1.09002 * 117.50058 * 252.50604 * 24 23 22 41 41 H 1.08997 * 117.51347 * 107.48321 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5333 1.1855 -0.0830 5 6 1.5022 2.0816 -1.1876 6 8 1.3115 3.2757 -1.0951 7 7 1.2596 1.4487 -2.3526 8 6 0.7112 2.1486 -3.4240 9 6 -0.1965 1.5168 -4.2739 10 6 -0.7416 2.1973 -5.3225 11 6 -0.3773 3.5385 -5.5527 12 6 -0.9326 4.2477 -6.6395 13 1 -0.9362 5.3278 -6.6341 14 6 -1.4781 3.5517 -7.7236 15 7 -0.9695 2.4014 -8.0854 16 14 -2.9323 4.2642 -8.6546 17 1 -2.4424 5.0149 -9.8386 18 1 -3.8225 3.1624 -9.1006 19 1 -3.6882 5.1819 -7.7648 20 6 0.5442 4.1681 -4.6932 21 6 1.0764 3.4765 -3.6453 22 6 1.6255 2.0350 1.2886 23 6 2.7284 2.2743 2.3217 24 6 2.1858 3.4434 1.4972 25 1 -0.3634 -1.0251 0.0710 26 1 -0.3633 0.5742 0.8522 27 1 -0.3633 0.4510 -0.9234 28 1 3.9009 0.6240 0.7761 29 1 3.8074 0.6657 -1.0010 30 1 3.9768 2.1812 -0.0825 31 1 1.4671 0.5056 -2.4445 32 1 -0.4718 0.4873 -4.0985 33 1 -1.4475 1.7080 -5.9773 34 1 -1.3480 1.9186 -8.8369 35 1 0.8285 5.1961 -4.8638 36 1 1.7834 3.9577 -2.9857 37 1 0.6217 1.8322 1.6619 38 1 2.4501 2.2290 3.3746 39 1 3.7284 1.9116 2.0836 40 1 2.8288 3.8500 0.7167 41 1 1.5504 4.1673 2.0074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292336445.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:44 Heat of formation + Delta-G solvation = -27.021527 kcal Electronic energy + Delta-G solvation = -23151.087663 eV Core-core repulsion = 19804.071440 eV Total energy + Delta-G solvation = -3347.016223 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.63804 -38.30355 -36.90325 -36.47127 -34.37267 -32.97827 -31.12092 -29.56033 -28.96763 -26.44378 -25.71296 -24.66717 -22.42837 -22.05608 -21.11733 -20.19000 -19.00876 -17.68834 -17.31230 -16.91800 -15.91178 -15.69456 -15.22493 -15.01597 -14.67666 -14.02562 -13.85307 -13.52564 -13.26017 -13.02869 -12.70643 -12.51483 -12.20195 -12.10358 -11.98221 -11.82969 -11.45160 -11.38427 -11.17015 -11.12735 -10.96231 -10.55270 -10.49061 -10.29826 -10.12944 -9.92899 -9.72421 -9.29079 -8.84575 -8.66167 -7.55909 -7.15919 -6.89990 -4.28268 2.53333 2.92378 3.03703 3.08734 3.10452 3.28966 3.35359 3.79735 3.87498 4.04592 4.47815 4.56131 4.75279 4.93393 4.99855 5.10063 5.25691 5.39505 5.47929 5.50200 5.62813 5.66938 5.70827 5.76478 5.90795 5.95071 6.12659 6.18017 6.24117 6.42277 6.76762 6.84936 6.98350 7.02309 7.14095 7.28506 7.55719 7.69486 7.88215 8.00844 8.24260 8.30168 8.53528 8.75494 8.82572 8.99142 9.99717 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033364 B = 0.003612 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.029306 B = 7749.670435 C = 8077.896563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.370 6.370 3 C 0.133 3.867 4 C -0.139 4.139 5 C 0.479 3.521 6 O -0.520 6.520 7 N -0.641 5.641 8 C -0.024 4.024 9 C -0.102 4.102 10 C -0.172 4.172 11 C 0.112 3.888 12 C -0.465 4.465 13 H 0.082 0.918 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.896 3.104 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.257 1.257 20 C -0.225 4.225 21 C -0.066 4.066 22 C -0.172 4.172 23 C -0.183 4.183 24 C -0.143 4.143 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.397 0.603 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.283 0.717 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -5.160 13.287 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.288 6.288 3 C 0.090 3.910 4 C -0.197 4.197 5 C 0.264 3.736 6 O -0.397 6.397 7 N -0.284 5.284 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.191 4.191 11 C 0.110 3.890 12 C -0.493 4.493 13 H 0.100 0.900 14 C -0.134 4.134 15 N -0.391 5.391 16 Si 0.719 3.281 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.245 4.245 21 C -0.086 4.086 22 C -0.190 4.190 23 C -0.220 4.220 24 C -0.180 4.180 25 H 0.108 0.892 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.126 0.874 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.186 -4.677 13.184 14.602 hybrid contribution -0.922 -0.156 -0.611 1.117 sum 3.265 -4.833 12.573 13.860 Atomic orbital electron populations 1.22963 0.80723 1.02917 1.01413 1.87943 1.20215 1.25835 1.94852 1.21187 0.95291 0.82862 0.91614 1.21867 0.90831 1.03285 1.03669 1.20997 0.79634 0.88716 0.84253 1.90674 1.50989 1.14520 1.83493 1.43029 1.61279 1.13094 1.11004 1.17099 1.06329 0.94079 0.94090 1.20159 0.97244 0.97878 0.96932 1.20625 1.03916 0.95986 0.98605 1.17591 0.88448 0.91588 0.91414 1.19521 1.33600 0.94915 1.01217 0.90014 1.25948 0.96488 0.94194 0.96738 1.69952 1.33774 1.13710 1.21628 0.86508 0.81772 0.80095 0.79705 1.19432 1.19869 1.18081 1.20592 1.03917 0.99740 1.00287 1.20329 0.98836 0.93126 0.96293 1.22458 0.99083 1.01021 0.96469 1.23181 0.98446 1.03938 0.96405 1.22816 1.02957 0.90367 1.01823 0.89225 0.93572 0.92728 0.90355 0.91181 0.90327 0.76834 0.89347 0.87421 0.90573 0.88800 0.87810 0.87436 0.88975 0.88124 0.88022 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.30 101.05 1.04 1.24 16 2 O -0.37 -4.91 9.75 -35.23 -0.34 -5.25 16 3 C 0.13 1.83 0.91 -91.77 -0.08 1.75 16 4 C -0.14 -1.60 7.44 37.16 0.28 -1.33 16 5 C 0.48 8.46 5.41 -10.98 -0.06 8.40 16 6 O -0.52 -10.84 12.09 5.56 0.07 -10.78 16 7 N -0.64 -11.73 4.12 -9.74 -0.04 -11.77 16 8 C -0.02 -0.54 6.29 -83.57 -0.53 -1.07 16 9 C -0.10 -2.35 9.90 -39.79 -0.39 -2.74 16 10 C -0.17 -4.39 8.74 -39.26 -0.34 -4.73 16 11 C 0.11 3.01 5.58 -106.80 -0.60 2.41 16 12 C -0.46 -12.29 8.94 -37.85 -0.34 -12.63 16 13 H 0.08 2.10 8.02 -52.48 -0.42 1.68 16 14 C 0.09 2.17 4.78 -17.34 -0.08 2.09 16 15 N -0.77 -19.32 11.72 55.55 0.65 -18.67 16 16 Si 0.90 18.15 29.66 -169.99 -5.04 13.10 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 C -0.23 -5.77 9.74 -39.26 -0.38 -6.15 16 21 C -0.07 -1.60 8.60 -39.79 -0.34 -1.94 16 22 C -0.17 -2.19 4.94 -90.62 -0.45 -2.64 16 23 C -0.18 -1.87 9.59 -26.74 -0.26 -2.12 16 24 C -0.14 -1.78 8.55 -26.73 -0.23 -2.01 16 25 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.53 6.15 -51.93 -0.32 0.21 16 27 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 28 H 0.08 0.75 6.90 -51.92 -0.36 0.40 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.89 7.04 -51.93 -0.37 0.52 16 31 H 0.40 6.32 8.32 -40.82 -0.34 5.98 16 32 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 33 H 0.11 2.79 6.46 -52.49 -0.34 2.45 16 34 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 35 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 36 H 0.10 2.47 6.31 -52.48 -0.33 2.14 16 37 H 0.11 1.37 6.26 -51.93 -0.33 1.04 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.10 0.92 5.86 -51.93 -0.30 0.61 16 40 H 0.10 1.40 6.93 -51.93 -0.36 1.04 16 41 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -28.99 330.06 -7.97 -36.95 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -5.47 Total: 12.92 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.76 Total: -21.48 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.61 Total: -30.45 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.28 Total: -16.03 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.04 Total: 13.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.99 -7.97 -36.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292336445.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.931 kcal (2) G-P(sol) polarization free energy of solvation -28.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds