Wall clock time and date at job start Tue Mar 31 2020 06:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 119.99904 * 2 1 4 4 C 1.53006 * 109.46520 * 125.00285 * 3 2 1 5 5 C 1.52999 * 109.47235 * 60.00190 * 4 3 2 6 6 C 1.53001 * 109.47248 * 299.99550 * 4 3 2 7 7 C 1.50702 * 109.46868 * 179.97438 * 4 3 2 8 8 O 1.21295 * 119.99849 * 0.02562 * 7 4 3 9 9 N 1.34775 * 120.00390 * 180.02562 * 7 4 3 10 10 C 1.39921 * 120.00297 * 174.78346 * 9 7 4 11 11 C 1.38952 * 120.03630 * 326.32796 * 10 9 7 12 12 C 1.38157 * 120.06754 * 180.02562 * 11 10 9 13 13 C 1.38163 * 120.13783 * 359.70182 * 12 11 10 14 14 C 1.38906 * 120.07242 * 0.54839 * 13 12 11 15 15 O 1.35748 * 120.03767 * 179.74671 * 14 13 12 16 16 C 1.34837 * 117.00241 * 173.82291 * 15 14 13 17 17 H 1.07995 * 119.99706 * 354.60037 * 16 15 14 18 18 C 1.38653 * 119.99779 * 174.59057 * 16 15 14 19 19 N 1.31558 * 120.00382 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99565 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47074 * 60.00518 * 20 18 16 22 22 H 1.48501 * 109.47131 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47424 * 300.00668 * 20 18 16 24 24 C 1.38716 * 120.03490 * 146.34302 * 10 9 7 25 25 H 1.08003 * 120.00635 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.00197 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99456 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46993 * 5.00466 * 3 2 1 29 29 H 1.08996 * 109.46917 * 244.99778 * 3 2 1 30 30 H 1.09004 * 109.46740 * 179.97438 * 5 4 3 31 31 H 1.09000 * 109.46773 * 299.99204 * 5 4 3 32 32 H 1.08995 * 109.47116 * 59.99996 * 5 4 3 33 33 H 1.08998 * 109.47220 * 300.00377 * 6 4 3 34 34 H 1.09003 * 109.46896 * 60.00648 * 6 4 3 35 35 H 1.08993 * 109.47080 * 180.02562 * 6 4 3 36 36 H 0.97007 * 119.99381 * 354.78416 * 9 7 4 37 37 H 1.08007 * 119.96816 * 0.02562 * 11 10 9 38 38 H 1.08001 * 119.93182 * 179.97438 * 12 11 10 39 39 H 1.08008 * 119.96841 * 180.29892 * 13 12 11 40 40 H 0.96996 * 119.99778 * 179.97438 * 19 18 16 41 41 H 1.08002 * 120.06661 * 0.02562 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3329 1.1817 5 6 4.0245 0.1728 1.0558 6 6 2.2521 1.1961 2.4890 7 6 3.7890 2.6378 1.1814 8 8 3.5704 3.4643 0.3210 9 7 4.7062 2.8864 2.1371 10 6 5.4834 4.0482 2.0756 11 6 5.8639 4.5662 0.8437 12 6 6.6317 5.7131 0.7822 13 6 7.0186 6.3520 1.9446 14 6 6.6459 5.8363 3.1794 15 8 7.0307 6.4618 4.3211 16 6 6.5305 5.9848 5.4789 17 1 5.7895 5.1993 5.4639 18 6 6.9677 6.5027 6.6885 19 7 7.8701 7.4598 6.7066 20 14 6.2742 5.8424 8.2924 21 1 6.5663 4.3902 8.3973 22 1 6.8997 6.5573 9.4337 23 1 4.8048 6.0549 8.3211 24 6 5.8753 4.6841 3.2445 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3585 2.1316 0.0896 29 1 2.6212 1.4026 -0.9313 30 1 4.7169 0.1929 1.8975 31 1 3.4795 -0.7712 1.0559 32 1 4.5823 0.2703 0.1245 33 1 1.5472 2.0226 2.5786 34 1 1.7071 0.2521 2.4890 35 1 2.9442 1.2164 3.3308 36 1 4.8275 2.2597 2.8676 37 1 5.5590 4.0717 -0.0669 38 1 6.9266 6.1135 -0.1765 39 1 7.6148 7.2511 1.8933 40 1 8.1757 7.8223 7.5528 41 1 5.5814 4.2831 4.2033 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292366092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:39 Heat of formation + Delta-G solvation = -27.608141 kcal Electronic energy + Delta-G solvation = -22531.691173 eV Core-core repulsion = 19184.649512 eV Total energy + Delta-G solvation = -3347.041661 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.61130 -38.86619 -37.13032 -36.12941 -34.34252 -32.92572 -32.22247 -29.33645 -28.51789 -27.61783 -26.84513 -25.34604 -23.82343 -21.82335 -21.37642 -19.94866 -19.02531 -17.91511 -17.67827 -16.60699 -15.86786 -15.48152 -15.12394 -15.01948 -14.64435 -14.35533 -14.03806 -13.94093 -13.60756 -13.46249 -13.08349 -12.90347 -12.55939 -12.42699 -12.24534 -11.89847 -11.73686 -11.60906 -11.36462 -11.17867 -11.06484 -11.06041 -11.01125 -10.75028 -10.46282 -9.86352 -9.55638 -9.53689 -9.34826 -8.80709 -7.73069 -7.16014 -6.45623 -4.05494 1.96049 2.04101 2.37204 2.86510 3.10968 3.12425 3.15130 3.25479 3.95137 4.43260 4.47650 4.58454 4.65360 4.87934 4.96991 5.01924 5.10416 5.27242 5.34271 5.47657 5.50323 5.56003 5.62456 5.70466 5.73562 5.84100 5.98239 5.99063 6.00533 6.07960 6.25360 6.27987 6.39956 6.54640 6.63481 6.97165 6.99275 7.11678 7.30572 7.41547 7.70303 7.81209 7.98570 8.32328 8.99644 9.70177 10.72406 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018972 B = 0.003808 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.524752 B = 7350.919623 C = 8488.226505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.071 4.071 4 C -0.075 4.075 5 C -0.143 4.143 6 C -0.142 4.142 7 C 0.519 3.481 8 O -0.519 6.519 9 N -0.667 5.667 10 C 0.180 3.820 11 C -0.206 4.206 12 C -0.063 4.063 13 C -0.201 4.201 14 C 0.168 3.832 15 O -0.176 6.176 16 C -0.393 4.393 17 H 0.089 0.911 18 C 0.040 3.960 19 N -0.862 5.862 20 Si 0.940 3.060 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.257 4.257 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.110 0.890 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.405 0.595 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.271 0.729 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -15.630 -8.836 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.166 4.166 3 C -0.109 4.109 4 C -0.079 4.079 5 C -0.200 4.200 6 C -0.200 4.200 7 C 0.306 3.694 8 O -0.394 6.394 9 N -0.311 5.311 10 C 0.087 3.913 11 C -0.226 4.226 12 C -0.082 4.082 13 C -0.221 4.221 14 C 0.114 3.886 15 O -0.079 6.079 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.164 4.164 19 N -0.497 5.497 20 Si 0.764 3.236 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.278 4.278 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.128 0.872 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.241 0.759 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.080 0.920 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.675 -14.729 -9.239 19.897 hybrid contribution -0.316 -0.712 1.284 1.501 sum -9.991 -15.441 -7.955 20.038 Atomic orbital electron populations 1.23863 0.95961 1.01799 1.01638 1.22953 0.95946 0.98308 0.99382 1.20602 0.97473 0.95564 0.97250 1.20755 0.96073 0.93005 0.98041 1.21922 0.98320 0.97011 1.02781 1.21901 1.00256 1.03089 0.94727 1.20605 0.79153 0.88380 0.81238 1.90714 1.64618 1.47136 1.36949 1.43521 1.37062 1.22828 1.27731 1.17425 0.92704 0.87116 0.94012 1.20522 1.05505 1.00683 0.95936 1.20527 0.96281 0.94517 0.96876 1.20249 1.08423 1.03371 0.90010 1.19083 0.91625 0.89832 0.88060 1.84019 1.61676 1.50703 1.11532 1.21222 1.22622 1.21839 0.81208 0.89336 1.25269 0.96260 0.96230 0.98670 1.70025 1.28010 1.24370 1.27331 0.85808 0.79020 0.78865 0.79885 1.19553 1.20244 1.19535 1.20818 1.10006 0.99779 0.97212 0.88616 0.88572 0.87234 0.90603 0.90137 0.91923 0.91085 0.91861 0.91894 0.91046 0.92026 0.75936 0.86432 0.86633 0.86384 0.91955 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 14.32 29.01 0.42 -1.07 16 2 C -0.15 -1.19 7.65 -36.03 -0.28 -1.46 16 3 C -0.07 -0.73 4.02 -27.88 -0.11 -0.84 16 4 C -0.08 -0.78 0.65 -155.66 -0.10 -0.88 16 5 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 6 C -0.14 -1.29 8.12 37.16 0.30 -0.98 16 7 C 0.52 7.62 6.22 -10.99 -0.07 7.55 16 8 O -0.52 -9.51 13.69 5.54 0.08 -9.44 16 9 N -0.67 -10.10 5.12 -9.88 -0.05 -10.15 16 10 C 0.18 3.48 6.27 -83.72 -0.52 2.95 16 11 C -0.21 -3.99 8.65 -39.35 -0.34 -4.33 16 12 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 13 C -0.20 -4.35 9.99 -39.36 -0.39 -4.74 16 14 C 0.17 4.10 6.64 -39.14 -0.26 3.84 16 15 O -0.18 -5.01 9.76 0.04 0.00 -5.01 16 16 C -0.39 -10.88 9.44 30.89 0.29 -10.59 16 17 H 0.09 2.26 5.30 -52.49 -0.28 1.98 16 18 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 19 N -0.86 -25.19 13.67 55.48 0.76 -24.43 16 20 Si 0.94 20.25 29.55 -169.99 -5.02 15.23 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C -0.26 -5.58 9.04 -39.21 -0.35 -5.93 16 25 H 0.10 0.60 8.06 -52.48 -0.42 0.18 16 26 H 0.10 0.75 7.84 -52.49 -0.41 0.34 16 27 H 0.11 0.74 6.81 -52.48 -0.36 0.38 16 28 H 0.08 0.86 7.75 -51.93 -0.40 0.46 16 29 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.06 0.49 7.69 -51.93 -0.40 0.09 16 31 H 0.07 0.46 6.53 -51.93 -0.34 0.12 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.54 7.22 -51.93 -0.37 0.16 16 35 H 0.06 0.51 7.46 -51.93 -0.39 0.13 16 36 H 0.41 4.95 7.68 -40.82 -0.31 4.64 16 37 H 0.12 2.22 6.43 -52.48 -0.34 1.88 16 38 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 39 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.13 2.74 5.72 -52.49 -0.30 2.44 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -32.33 341.03 -6.28 -38.61 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.57 Total: 8.03 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.61 Total: -17.98 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.71 Total: -34.58 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.33 -6.28 -38.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292366092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.000 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds