Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00475 * 2 1 4 4 N 1.46502 * 109.46969 * 125.00128 * 3 2 1 5 5 C 1.46501 * 119.99836 * 269.99977 * 4 3 2 6 6 C 1.50695 * 109.47447 * 269.99912 * 5 4 3 7 7 H 1.08007 * 120.00032 * 0.02562 * 6 5 4 8 8 C 1.37884 * 120.00379 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99522 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00095 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47248 * 90.00427 * 10 8 6 12 12 H 1.48501 * 109.46844 * 210.00375 * 10 8 6 13 13 H 1.48499 * 109.47325 * 329.99974 * 10 8 6 14 14 C 1.34770 * 120.00217 * 90.00258 * 4 3 2 15 15 O 1.21781 * 120.00244 * 179.97438 * 14 4 3 16 16 C 1.41553 * 119.99813 * 0.02562 * 14 4 3 17 17 C 1.35628 * 120.00119 * 179.97438 * 16 14 4 18 18 C 1.41603 * 119.99992 * 180.02562 * 17 16 14 19 19 C 1.37954 * 126.10214 * 180.02562 * 18 17 16 20 20 C 1.40317 * 106.52800 * 179.97438 * 19 18 17 21 21 C 1.35149 * 107.20423 * 0.26552 * 20 19 18 22 22 C 1.50704 * 125.48218 * 179.72929 * 21 20 19 23 23 C 1.52997 * 109.46934 * 90.00047 * 22 21 20 24 24 O 1.34018 * 109.03802 * 359.56766 * 21 20 19 25 25 H 1.07999 * 120.00273 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.99636 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99917 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46769 * 5.00425 * 3 2 1 29 29 H 1.08998 * 109.47579 * 245.00224 * 3 2 1 30 30 H 1.09004 * 109.47286 * 30.00352 * 5 4 3 31 31 H 1.09001 * 109.46964 * 150.00223 * 5 4 3 32 32 H 0.97002 * 119.99558 * 179.97438 * 9 8 6 33 33 H 1.07998 * 119.99894 * 359.97438 * 16 14 4 34 34 H 1.07998 * 119.99987 * 359.97438 * 17 16 14 35 35 H 1.07997 * 126.73890 * 359.95981 * 19 18 17 36 36 H 1.08002 * 126.39427 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47167 * 209.99550 * 22 21 20 38 38 H 1.08993 * 109.47170 * 330.00297 * 22 21 20 39 39 H 1.09004 * 109.47236 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.47288 * 300.00308 * 23 22 21 41 41 H 1.09006 * 109.47199 * 60.00097 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8445 3.3434 2.4805 7 1 3.3036 3.8369 1.6366 8 6 2.5187 4.0665 3.6084 9 7 1.9592 3.4657 4.6358 10 14 2.8720 5.8995 3.6770 11 1 1.6991 6.6494 3.1601 12 1 3.1357 6.3004 5.0824 13 1 4.0621 6.2058 2.8433 14 6 4.2497 0.8659 0.9824 15 8 5.0232 0.8885 1.9228 16 6 4.6701 0.3514 -0.2675 17 6 5.9341 -0.1168 -0.4177 18 6 6.3547 -0.6310 -1.6682 19 6 7.6043 -1.1373 -1.9601 20 6 7.5717 -1.5289 -3.3072 21 6 6.3355 -1.2476 -3.7754 22 6 5.8548 -1.4978 -5.1816 23 6 5.2463 -2.8987 -5.2708 24 8 5.6047 -0.7137 -2.7870 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3587 2.1316 0.0896 29 1 2.6214 1.4026 -0.9314 30 1 1.4889 1.6965 2.5460 31 1 3.0991 1.3601 3.2260 32 1 1.7303 3.9744 5.4294 33 1 3.9843 0.3318 -1.1016 34 1 6.6200 -0.0968 0.4163 35 1 8.4432 -1.2166 -1.2846 36 1 8.3844 -1.9682 -3.8667 37 1 5.1003 -0.7566 -5.4450 38 1 6.6951 -1.4221 -5.8717 39 1 4.8982 -3.0796 -6.2878 40 1 6.0007 -3.6401 -5.0074 41 1 4.4059 -2.9745 -4.5807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293948981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = 12.429348 kcal Electronic energy + Delta-G solvation = -22099.637778 eV Core-core repulsion = 18754.332273 eV Total energy + Delta-G solvation = -3345.305505 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.66118 -39.27938 -35.75939 -34.81297 -33.73807 -33.14738 -32.54669 -32.02599 -28.79779 -27.35524 -25.58627 -24.70609 -23.14911 -21.94882 -21.48465 -20.15483 -19.74492 -18.07564 -17.24093 -16.45070 -16.36506 -16.11307 -15.56177 -14.80471 -14.64006 -14.57559 -14.25071 -14.11503 -13.37203 -13.14940 -13.07594 -12.92067 -12.73054 -12.34921 -12.18156 -11.99724 -11.78596 -11.55405 -11.36485 -11.24053 -11.06220 -10.86433 -10.56763 -10.47870 -10.16295 -9.85993 -9.61081 -9.16510 -9.01094 -8.40929 -7.91902 -7.58324 -6.01633 -4.06320 0.60060 2.06695 2.48088 2.73973 2.78199 3.31908 3.38472 3.43409 4.01875 4.12319 4.41467 4.47798 4.68229 4.79534 4.87120 4.93587 5.13401 5.20389 5.26285 5.32137 5.42467 5.44455 5.48850 5.51651 5.60857 5.72109 5.72934 5.81541 6.03563 6.06025 6.16890 6.23326 6.33095 6.46740 6.82575 6.94943 7.04367 7.14727 7.48058 7.57379 7.94911 8.26134 8.41660 8.91848 9.08911 9.58406 11.06402 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003525 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.671489 B = 7942.235753 C = 8714.410297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C 0.134 3.866 4 N -0.586 5.586 5 C 0.246 3.754 6 C -0.526 4.526 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.533 3.467 15 O -0.544 6.544 16 C -0.181 4.181 17 C -0.022 4.022 18 C 0.009 3.991 19 C -0.175 4.175 20 C -0.211 4.211 21 C -0.003 4.003 22 C -0.045 4.045 23 C -0.151 4.151 24 O -0.163 6.163 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.044 0.956 32 H 0.263 0.737 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.049 -11.682 -19.943 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.010 3.990 4 N -0.316 5.316 5 C 0.127 3.873 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.323 3.677 15 O -0.425 6.425 16 C -0.201 4.201 17 C -0.042 4.042 18 C -0.040 4.040 19 C -0.195 4.195 20 C -0.230 4.230 21 C -0.054 4.054 22 C -0.082 4.082 23 C -0.208 4.208 24 O -0.059 6.059 25 H 0.112 0.888 26 H 0.117 0.883 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.044 -11.507 -19.246 22.984 hybrid contribution 0.219 0.955 0.141 0.990 sum 5.263 -10.552 -19.105 22.451 Atomic orbital electron populations 1.23808 0.95807 1.01733 1.00756 1.23445 0.96407 0.99028 0.99721 1.20639 0.93052 0.95399 0.89888 1.48179 1.10452 1.59306 1.13643 1.19291 0.95443 0.93789 0.78774 1.21442 1.40467 0.93263 1.01284 0.92427 1.24935 0.95088 0.98766 0.95321 1.69939 1.42108 1.36131 1.05184 0.86495 0.78607 0.84986 0.77334 1.20662 1.21090 1.19868 1.16884 0.82811 0.79644 0.88313 1.90804 1.52486 1.56975 1.42205 1.22526 0.97263 1.01392 0.98947 1.20640 0.97009 0.94597 0.91989 1.19943 0.90695 1.06463 0.86942 1.22272 0.97313 1.03152 0.96720 1.21448 0.97825 1.07964 0.95791 1.22641 0.91110 1.00738 0.90961 1.20128 1.02017 0.98753 0.87352 1.21800 1.01349 0.95309 1.02353 1.84044 1.40312 1.63430 1.18160 0.88791 0.88277 0.87760 0.89357 0.90599 0.94920 0.93747 0.92740 0.85444 0.82285 0.82781 0.83325 0.89898 0.88819 0.91580 0.92143 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.48 14.32 29.01 0.42 -2.06 16 2 C -0.17 -2.51 9.85 -36.03 -0.35 -2.86 16 3 C 0.13 2.30 5.53 -5.19 -0.03 2.27 16 4 N -0.59 -12.90 2.44 -179.87 -0.44 -13.34 16 5 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16 6 C -0.53 -15.17 9.39 -34.44 -0.32 -15.50 16 7 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 10 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.53 11.65 7.44 -15.00 -0.11 11.54 16 15 O -0.54 -14.04 15.69 5.12 0.08 -13.96 16 16 C -0.18 -3.07 8.68 -39.25 -0.34 -3.41 16 17 C -0.02 -0.34 9.39 -39.23 -0.37 -0.71 16 18 C 0.01 0.12 6.84 -38.40 -0.26 -0.14 16 19 C -0.18 -2.05 10.90 -38.90 -0.42 -2.47 16 20 C -0.21 -2.17 10.76 -39.90 -0.43 -2.60 16 21 C 0.00 -0.03 6.55 -35.41 -0.23 -0.26 16 22 C -0.05 -0.32 6.46 -27.88 -0.18 -0.50 16 23 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 24 O -0.16 -2.18 10.18 4.68 0.05 -2.13 16 25 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 26 H 0.10 1.31 7.84 -52.49 -0.41 0.90 16 27 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 28 H 0.09 1.55 7.72 -51.93 -0.40 1.14 16 29 H 0.08 1.12 6.08 -51.93 -0.32 0.81 16 30 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 31 H 0.04 1.34 7.42 -51.93 -0.39 0.95 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.13 1.91 5.75 -52.49 -0.30 1.60 16 34 H 0.16 2.44 7.46 -52.49 -0.39 2.05 16 35 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 36 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 358.48 15.07 5.40 5.40 Total: -1.00 -33.91 358.48 -7.57 -41.47 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.98 Total: 0.68 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -2.40 Total: -9.06 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.30 Total: -39.53 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.13 Total: -16.09 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.91 -7.57 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293948981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.902 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds