Wall clock time and date at job start Tue Mar 31 2020 07:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47131 * 2 1 4 4 C 1.50706 * 120.00033 * 275.00165 * 3 2 1 5 5 C 1.32992 * 119.99777 * 95.00080 * 3 2 1 6 6 C 1.47108 * 119.99664 * 187.42998 * 5 3 2 7 7 O 1.21615 * 119.99993 * 7.28922 * 6 5 3 8 8 N 1.34774 * 119.99797 * 187.28592 * 6 5 3 9 9 C 1.46496 * 120.00073 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.47338 * 180.02562 * 9 8 6 11 11 C 1.38293 * 119.92969 * 269.72608 * 10 9 8 12 12 C 1.38100 * 120.06828 * 179.72509 * 11 10 9 13 13 C 1.38885 * 119.92997 * 0.56824 * 12 11 10 14 14 O 1.35754 * 120.06816 * 179.68198 * 13 12 11 15 15 C 1.34827 * 116.99481 * 174.23883 * 14 13 12 16 16 H 1.08001 * 120.00336 * 5.12128 * 15 14 13 17 17 C 1.38662 * 119.99937 * 185.11434 * 15 14 13 18 18 N 1.31554 * 120.00147 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99535 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46976 * 89.99878 * 19 17 15 21 21 H 1.48504 * 109.46579 * 209.99738 * 19 17 15 22 22 H 1.48495 * 109.47142 * 329.99528 * 19 17 15 23 23 C 1.38875 * 119.85912 * 359.70537 * 13 12 11 24 24 C 1.38102 * 119.93256 * 359.97438 * 23 13 12 25 25 H 1.08994 * 109.46767 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47067 * 300.00237 * 1 2 3 27 27 H 1.09001 * 109.46859 * 60.00045 * 1 2 3 28 28 H 1.09004 * 109.47481 * 240.00502 * 2 1 3 29 29 H 1.08995 * 109.47430 * 120.00313 * 2 1 3 30 30 H 1.08995 * 109.47101 * 95.54801 * 4 3 2 31 31 H 1.09002 * 109.46780 * 215.55410 * 4 3 2 32 32 H 1.09004 * 109.46870 * 335.54899 * 4 3 2 33 33 H 1.07997 * 120.00203 * 7.43214 * 5 3 2 34 34 H 0.97003 * 119.99942 * 0.02562 * 8 6 5 35 35 H 1.09006 * 109.47098 * 299.99653 * 9 8 6 36 36 H 1.08998 * 109.47660 * 59.99781 * 9 8 6 37 37 H 1.08002 * 119.96665 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.03695 * 180.27283 * 12 11 10 39 39 H 0.97000 * 119.99936 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.03096 * 179.97438 * 23 13 12 41 41 H 1.08000 * 119.96408 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.1762 2.1692 -1.3002 5 6 2.3486 2.0143 1.1474 6 6 2.6816 3.4470 1.1670 7 8 2.5401 4.1180 0.1627 8 7 3.1434 4.0160 2.2981 9 6 3.4745 5.4430 2.3179 10 6 3.9653 5.8258 3.6904 11 6 3.0676 6.2625 4.6473 12 6 3.5135 6.6087 5.9077 13 6 4.8667 6.5291 6.2100 14 8 5.3090 6.8748 7.4461 15 6 6.6136 6.6616 7.7111 16 1 7.2730 6.3114 6.9307 17 6 7.1089 6.8920 8.9856 18 7 8.3820 6.6844 9.2440 19 14 5.9682 7.4972 10.3354 20 1 5.3787 6.3331 11.0442 21 1 6.7372 8.3257 11.2986 22 1 4.8823 8.3140 9.7366 23 6 5.7664 6.0956 5.2451 24 6 5.3134 5.7445 3.9886 25 1 -0.3632 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.2831 2.7690 -1.4750 31 1 3.0479 2.8217 -1.2492 32 1 2.3019 1.4581 -2.1167 33 1 2.3611 1.4443 2.0646 34 1 3.2565 3.4807 3.0991 35 1 4.2546 5.6452 1.5840 36 1 2.5862 6.0256 2.0738 37 1 2.0160 6.3291 4.4100 38 1 2.8114 6.9455 6.6560 39 1 8.7283 6.8453 10.1357 40 1 6.8194 6.0330 5.4771 41 1 6.0127 5.4077 3.2377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294710482.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:59 Heat of formation + Delta-G solvation = -36.469985 kcal Electronic energy + Delta-G solvation = -21441.837864 eV Core-core repulsion = 18094.411925 eV Total energy + Delta-G solvation = -3347.425939 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.90593 -39.22256 -37.18892 -36.30866 -34.39845 -32.48353 -31.27077 -30.41900 -30.18431 -27.91298 -26.02612 -24.80372 -23.91401 -22.19001 -20.99682 -20.60769 -18.83088 -17.98483 -17.39235 -17.00344 -15.93823 -15.39528 -14.93608 -14.80028 -14.56700 -14.43944 -14.06977 -13.92189 -13.83420 -13.44177 -13.23728 -12.98099 -12.74858 -12.57691 -12.40485 -12.27188 -11.98730 -11.79776 -11.66288 -11.47201 -11.23050 -10.95215 -10.84721 -10.77507 -10.23016 -9.62647 -9.48919 -9.37785 -8.95293 -8.83503 -8.38315 -7.48193 -6.50399 -4.17377 1.24864 1.96194 2.02237 3.16165 3.20069 3.29233 3.34264 3.45710 4.16250 4.37714 4.50194 4.57764 4.74454 4.90279 4.96411 5.01218 5.03527 5.20200 5.27085 5.35365 5.38522 5.55991 5.56272 5.60036 5.67272 5.73004 5.82835 5.87041 5.94279 6.02829 6.24465 6.33430 6.38047 6.45089 6.56263 6.67524 6.90093 7.12354 7.18583 7.49381 7.65163 7.70673 7.93864 8.31325 8.84189 9.44948 10.56786 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.002516 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.358006 B =11127.290609 C =11279.037262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.034 4.034 4 C -0.121 4.121 5 C -0.229 4.229 6 C 0.540 3.460 7 O -0.549 6.549 8 N -0.720 5.720 9 C 0.178 3.822 10 C -0.205 4.205 11 C -0.057 4.057 12 C -0.195 4.195 13 C 0.166 3.834 14 O -0.213 6.213 15 C -0.392 4.392 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.224 4.224 24 C -0.053 4.053 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.125 0.875 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.281 0.719 40 H 0.134 0.866 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.673 -10.620 -14.951 22.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.036 4.036 4 C -0.177 4.177 5 C -0.250 4.250 6 C 0.330 3.670 7 O -0.429 6.429 8 N -0.370 5.370 9 C 0.056 3.944 10 C -0.207 4.207 11 C -0.075 4.075 12 C -0.214 4.214 13 C 0.113 3.887 14 O -0.117 6.117 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.513 5.513 19 Si 0.731 3.269 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.243 4.243 24 C -0.071 4.071 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.143 0.857 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.152 0.848 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.678 -9.996 -15.270 22.222 hybrid contribution -0.039 -0.055 1.221 1.223 sum -12.717 -10.051 -14.049 21.451 Atomic orbital electron populations 1.21706 0.94091 1.01998 1.02525 1.20760 0.96617 0.92780 1.03230 1.22522 0.90252 0.95354 0.95454 1.21107 1.04414 0.99339 0.92877 1.22442 1.09051 0.94420 0.99106 1.18584 0.77239 0.88089 0.83080 1.90744 1.54236 1.64897 1.33070 1.46227 1.66156 1.11169 1.13466 1.19973 0.99737 0.80362 0.94352 1.19298 0.93984 1.11733 0.95660 1.20535 0.98198 0.96797 0.92010 1.20216 0.93085 1.10356 0.97770 1.19183 0.92466 0.91653 0.85389 1.83575 1.28783 1.72139 1.27232 1.20788 0.80885 1.46490 0.98546 0.87504 1.24492 0.96030 0.96036 0.97403 1.69641 1.12491 1.46208 1.22927 0.86171 0.80685 0.79512 0.80496 1.19809 1.20679 1.18323 1.21281 1.00961 1.08219 0.93828 1.20703 0.94327 0.96450 0.95660 0.92091 0.92305 0.92344 0.90641 0.90747 0.90440 0.89349 0.92910 0.85732 0.76379 0.91531 0.91539 0.86786 0.86368 0.90907 0.84791 0.87106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.10 -0.65 6.10 -27.88 -0.17 -0.82 16 3 C -0.03 -0.32 5.36 -101.16 -0.54 -0.86 16 4 C -0.12 -1.21 8.47 36.01 0.30 -0.90 16 5 C -0.23 -2.35 9.63 -37.80 -0.36 -2.72 16 6 C 0.54 7.06 7.59 -12.66 -0.10 6.97 16 7 O -0.55 -8.65 13.33 5.26 0.07 -8.58 16 8 N -0.72 -8.95 5.54 -62.67 -0.35 -9.30 16 9 C 0.18 2.44 5.80 -5.19 -0.03 2.41 16 10 C -0.21 -3.18 5.25 -104.58 -0.55 -3.73 16 11 C -0.06 -0.90 9.69 -39.61 -0.38 -1.28 16 12 C -0.19 -3.65 9.99 -39.39 -0.39 -4.04 16 13 C 0.17 3.66 6.65 -39.11 -0.26 3.40 16 14 O -0.21 -5.43 8.59 0.04 0.00 -5.43 16 15 C -0.39 -10.72 9.95 30.89 0.31 -10.41 16 16 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 17 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 18 N -0.88 -24.72 13.96 55.48 0.77 -23.95 16 19 Si 0.91 21.12 28.62 -169.99 -4.86 16.26 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 23 C -0.22 -4.58 9.17 -39.40 -0.36 -4.94 16 24 C -0.05 -0.89 9.69 -39.61 -0.38 -1.28 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 29 H 0.07 0.45 7.99 -51.93 -0.41 0.04 16 30 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 31 H 0.09 1.07 6.20 -51.93 -0.32 0.75 16 32 H 0.05 0.41 8.03 -51.93 -0.42 0.00 16 33 H 0.12 1.03 7.99 -52.49 -0.42 0.61 16 34 H 0.40 4.45 8.45 -40.82 -0.34 4.11 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 38 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 41 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -29.66 348.97 -7.60 -37.27 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.85 Total: 5.56 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -2.65 Total: -17.08 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.43 Total: -33.25 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.07 Total: -14.02 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.86 Total: 16.26 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.66 -7.60 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294710482.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.795 kcal (2) G-P(sol) polarization free energy of solvation -29.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds