Wall clock time and date at job start Tue Mar 31 2020 07:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47144 * 2 1 4 4 C 1.30996 * 119.99602 * 125.00088 * 3 2 1 5 5 C 1.50705 * 120.00130 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47301 * 124.99702 * 5 4 3 7 7 C 1.34775 * 119.99904 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00014 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00040 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47436 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93634 * 269.73208 * 10 9 7 12 12 C 1.38103 * 120.07235 * 179.72038 * 11 10 9 13 13 C 1.38881 * 119.92859 * 0.56979 * 12 11 10 14 14 O 1.35743 * 120.07033 * 179.67702 * 13 12 11 15 15 C 1.34829 * 117.00323 * 174.48588 * 14 13 12 16 16 H 1.08000 * 119.99772 * 5.06302 * 15 14 13 17 17 C 1.38655 * 120.00285 * 185.06067 * 15 14 13 18 18 N 1.31556 * 119.99986 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99817 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47529 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47049 * 119.99936 * 19 17 15 22 22 H 1.48497 * 109.46877 * 239.99598 * 19 17 15 23 23 C 1.38884 * 119.86119 * 359.70391 * 13 12 11 24 24 C 1.38100 * 119.93123 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47011 * 59.99838 * 1 2 3 26 26 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47127 * 300.00126 * 1 2 3 28 28 H 1.09002 * 109.47368 * 240.00332 * 2 1 3 29 29 H 1.08996 * 109.47311 * 120.00478 * 2 1 3 30 30 H 1.07996 * 120.00311 * 304.99916 * 3 2 1 31 31 H 1.08003 * 120.00312 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46470 * 5.00014 * 5 4 3 33 33 H 1.08996 * 109.47457 * 245.00489 * 5 4 3 34 34 H 0.96999 * 119.99614 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.47119 * 60.00120 * 9 7 6 36 36 H 1.09004 * 109.47334 * 300.00265 * 9 7 6 37 37 H 1.08004 * 119.96372 * 359.97187 * 11 10 9 38 38 H 1.07998 * 120.03412 * 180.26808 * 12 11 10 39 39 H 0.97002 * 119.99992 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.03050 * 179.97438 * 23 13 12 41 41 H 1.08003 * 119.96708 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8641 1.8214 0.9293 5 6 3.3661 3.2424 0.9298 6 7 3.0835 3.8598 2.2279 7 6 3.4450 5.1373 2.4595 8 8 4.0039 5.7759 1.5931 9 6 3.1537 5.7726 3.7946 10 6 3.6558 7.1935 3.7951 11 6 4.9456 7.4695 4.2108 12 6 5.4105 8.7700 4.2069 13 6 4.5774 9.8024 3.7962 14 8 5.0293 11.0825 3.7974 15 6 4.2110 12.0210 3.2803 16 1 3.2135 11.7532 2.9646 17 6 4.6501 13.3301 3.1538 18 7 5.8653 13.6564 3.5380 19 14 3.5161 14.6305 2.4380 20 1 2.2132 14.0114 2.0855 21 1 3.2992 15.7044 3.4406 22 1 4.1346 15.2096 1.2185 23 6 3.2808 9.5226 3.3847 24 6 2.8236 8.2195 3.3856 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7066 2.1088 -0.7661 31 1 3.1903 1.1333 1.6952 32 1 2.8641 3.8052 0.1427 33 1 4.4413 3.2480 0.7511 34 1 2.6361 3.3490 2.9207 35 1 3.6556 5.2101 4.5818 36 1 2.0784 5.7668 3.9730 37 1 5.5914 6.6668 4.5349 38 1 6.4193 8.9843 4.5275 39 1 6.1724 14.5723 3.4498 40 1 2.6305 10.3235 3.0652 41 1 1.8156 8.0012 3.0653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295947674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:15 Heat of formation + Delta-G solvation = -37.792592 kcal Electronic energy + Delta-G solvation = -21181.366214 eV Core-core repulsion = 17833.882922 eV Total energy + Delta-G solvation = -3347.483292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.75673 -38.74747 -36.88532 -36.32052 -34.44489 -32.44135 -31.70551 -30.82616 -30.08307 -27.25341 -25.79109 -24.87795 -22.63690 -21.90701 -21.05552 -20.39954 -19.67968 -17.92016 -17.08352 -16.82138 -16.19336 -15.58424 -14.95159 -14.91306 -14.52134 -14.27060 -14.19823 -13.82241 -13.56343 -13.45768 -13.34468 -13.12998 -12.64967 -12.53434 -12.35937 -12.16098 -11.77182 -11.47149 -11.43658 -11.27159 -11.21646 -10.80010 -10.69970 -10.54547 -10.37646 -9.89773 -9.45102 -9.26228 -9.03817 -8.77058 -8.08393 -7.09817 -6.39536 -3.97887 1.68353 2.31549 2.34591 2.83263 3.15414 3.17625 3.23183 3.41080 4.01594 4.29724 4.56556 4.61419 4.82146 4.89548 4.95405 5.07547 5.14207 5.19204 5.31733 5.36108 5.38402 5.44718 5.49012 5.57913 5.63306 5.72689 5.77126 5.79631 5.91491 6.23072 6.27639 6.28193 6.47435 6.48503 6.76986 6.98152 7.11953 7.30488 7.43698 7.49878 7.53443 7.90728 8.06111 8.38037 9.06406 9.77592 10.78793 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.002391 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.527980 B =11708.631587 C =12200.609209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.177 4.177 5 C 0.149 3.851 6 N -0.738 5.738 7 C 0.507 3.493 8 O -0.521 6.521 9 C -0.079 4.079 10 C -0.169 4.169 11 C -0.060 4.060 12 C -0.191 4.191 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.390 4.390 16 H 0.092 0.908 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.232 4.232 24 C -0.057 4.057 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.398 0.602 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.592 -24.739 -2.603 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.136 4.136 3 C -0.155 4.155 4 C -0.196 4.196 5 C 0.026 3.974 6 N -0.392 5.392 7 C 0.294 3.706 8 O -0.395 6.395 9 C -0.119 4.119 10 C -0.171 4.171 11 C -0.078 4.078 12 C -0.211 4.211 13 C 0.103 3.897 14 O -0.083 6.083 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.252 4.252 24 C -0.075 4.075 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.232 0.768 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.144 0.856 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.812 -23.919 -3.164 25.686 hybrid contribution -0.784 0.339 -0.154 0.868 sum -9.596 -23.580 -3.318 25.673 Atomic orbital electron populations 1.21716 0.94914 1.01763 1.02239 1.20680 0.96336 0.94044 1.02495 1.23001 0.96380 0.97493 0.98660 1.22923 0.99593 0.96644 1.00422 1.20276 1.00874 0.90053 0.86232 1.46093 1.63087 1.13766 1.16287 1.21092 0.78197 0.80828 0.90494 1.90750 1.40279 1.61959 1.46476 1.20404 1.02521 0.94899 0.94096 1.18641 0.95727 0.92287 1.10411 1.20404 0.94244 0.95138 0.98058 1.20156 0.99864 0.91124 1.09920 1.19381 0.91889 0.86019 0.92443 1.83974 1.43159 1.11314 1.69822 1.21377 0.96506 0.87420 1.41307 0.89043 1.25289 0.96853 0.97342 0.97142 1.70053 1.16350 1.19356 1.44135 0.85646 0.79302 0.79864 0.78597 1.19124 1.20193 1.20173 1.21108 0.97020 0.96927 1.10103 1.20511 0.97950 0.92245 0.96823 0.92503 0.92494 0.92497 0.90930 0.91480 0.86992 0.86785 0.91383 0.90907 0.76795 0.88986 0.89032 0.87384 0.86547 0.92144 0.85594 0.87845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.89 37.16 0.37 -0.38 16 2 C -0.10 -0.52 6.38 -27.88 -0.18 -0.70 16 3 C -0.14 -0.90 9.12 -36.02 -0.33 -1.23 16 4 C -0.18 -1.26 9.24 -36.02 -0.33 -1.59 16 5 C 0.15 1.46 6.11 -5.19 -0.03 1.43 16 6 N -0.74 -7.46 5.55 -61.47 -0.34 -7.80 16 7 C 0.51 7.21 7.82 -10.99 -0.09 7.13 16 8 O -0.52 -10.16 16.03 5.56 0.09 -10.07 16 9 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 10 C -0.17 -3.04 4.38 -104.58 -0.46 -3.49 16 11 C -0.06 -1.14 9.69 -39.61 -0.38 -1.53 16 12 C -0.19 -4.29 9.99 -39.39 -0.39 -4.68 16 13 C 0.16 3.97 6.65 -39.10 -0.26 3.71 16 14 O -0.18 -5.31 9.76 0.07 0.00 -5.31 16 15 C -0.39 -11.26 9.49 30.89 0.29 -10.96 16 16 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 19 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.23 -5.34 9.17 -39.39 -0.36 -5.70 16 24 C -0.06 -1.11 9.69 -39.61 -0.38 -1.50 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 30 H 0.11 0.76 7.84 -52.49 -0.41 0.35 16 31 H 0.11 0.67 7.84 -52.48 -0.41 0.26 16 32 H 0.07 0.75 7.79 -51.92 -0.40 0.34 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.40 2.75 8.46 -40.82 -0.35 2.40 16 35 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 38 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 39 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.13 2.89 5.64 -52.49 -0.30 2.59 16 41 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -34.75 354.76 -7.88 -42.63 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.90 Total: 4.02 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -2.80 Total: -19.71 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.42 Total: -32.99 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.09 Total: -15.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.75 -7.88 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295947674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -34.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds