Wall clock time and date at job start Tue Mar 31 2020 07:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47144 * 2 1 4 4 C 1.30996 * 119.99602 * 125.00088 * 3 2 1 5 5 C 1.50705 * 120.00130 * 180.02562 * 4 3 2 6 6 N 1.46498 * 109.47301 * 124.99702 * 5 4 3 7 7 C 1.34775 * 119.99904 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00014 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00040 * 179.97438 * 7 6 5 10 10 C 1.50695 * 109.47436 * 179.97438 * 9 7 6 11 11 C 1.38300 * 119.93634 * 269.73208 * 10 9 7 12 12 C 1.38103 * 120.07235 * 179.72038 * 11 10 9 13 13 C 1.38881 * 119.92859 * 0.56979 * 12 11 10 14 14 O 1.35743 * 120.07033 * 179.67702 * 13 12 11 15 15 C 1.34829 * 117.00323 * 174.48588 * 14 13 12 16 16 H 1.08000 * 119.99772 * 5.06302 * 15 14 13 17 17 C 1.38655 * 120.00285 * 185.06067 * 15 14 13 18 18 N 1.31556 * 119.99986 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99817 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47529 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47049 * 119.99936 * 19 17 15 22 22 H 1.48497 * 109.46877 * 239.99598 * 19 17 15 23 23 C 1.38884 * 119.86119 * 359.70391 * 13 12 11 24 24 C 1.38100 * 119.93123 * 0.02562 * 23 13 12 25 25 H 1.09002 * 109.47011 * 59.99838 * 1 2 3 26 26 H 1.09001 * 109.47111 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47127 * 300.00126 * 1 2 3 28 28 H 1.09002 * 109.47368 * 240.00332 * 2 1 3 29 29 H 1.08996 * 109.47311 * 120.00478 * 2 1 3 30 30 H 1.07996 * 120.00311 * 304.99916 * 3 2 1 31 31 H 1.08003 * 120.00312 * 0.02562 * 4 3 2 32 32 H 1.09007 * 109.46470 * 5.00014 * 5 4 3 33 33 H 1.08996 * 109.47457 * 245.00489 * 5 4 3 34 34 H 0.96999 * 119.99614 * 0.02562 * 6 5 4 35 35 H 1.08999 * 109.47119 * 60.00120 * 9 7 6 36 36 H 1.09004 * 109.47334 * 300.00265 * 9 7 6 37 37 H 1.08004 * 119.96372 * 359.97187 * 11 10 9 38 38 H 1.07998 * 120.03412 * 180.26808 * 12 11 10 39 39 H 0.97002 * 119.99992 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.03050 * 179.97438 * 23 13 12 41 41 H 1.08003 * 119.96708 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.8641 1.8214 0.9293 5 6 3.3661 3.2424 0.9298 6 7 3.0835 3.8598 2.2279 7 6 3.4450 5.1373 2.4595 8 8 4.0039 5.7759 1.5931 9 6 3.1537 5.7726 3.7946 10 6 3.6558 7.1935 3.7951 11 6 4.9456 7.4695 4.2108 12 6 5.4105 8.7700 4.2069 13 6 4.5774 9.8024 3.7962 14 8 5.0293 11.0825 3.7974 15 6 4.2110 12.0210 3.2803 16 1 3.2135 11.7532 2.9646 17 6 4.6501 13.3301 3.1538 18 7 5.8653 13.6564 3.5380 19 14 3.5161 14.6305 2.4380 20 1 2.2132 14.0114 2.0855 21 1 3.2992 15.7044 3.4406 22 1 4.1346 15.2096 1.2185 23 6 3.2808 9.5226 3.3847 24 6 2.8236 8.2195 3.3856 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.7066 2.1088 -0.7661 31 1 3.1903 1.1333 1.6952 32 1 2.8641 3.8052 0.1427 33 1 4.4413 3.2480 0.7511 34 1 2.6361 3.3490 2.9207 35 1 3.6556 5.2101 4.5818 36 1 2.0784 5.7668 3.9730 37 1 5.5914 6.6668 4.5349 38 1 6.4193 8.9843 4.5275 39 1 6.1724 14.5723 3.4498 40 1 2.6305 10.3235 3.0652 41 1 1.8156 8.0012 3.0653 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295947674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:14 Heat of formation + Delta-G solvation = -60.755152 kcal Electronic energy + Delta-G solvation = -21182.361945 eV Core-core repulsion = 17833.882922 eV Total energy + Delta-G solvation = -3348.479023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07461 -40.36772 -38.28362 -37.33562 -35.27753 -34.39779 -32.99577 -31.80227 -31.68384 -28.53175 -27.34249 -26.25122 -23.63225 -23.24394 -22.42811 -21.45104 -20.45328 -19.84088 -18.85908 -17.95579 -17.23227 -16.70831 -16.33897 -16.16006 -15.83684 -15.55091 -15.42175 -15.35713 -14.91841 -14.58126 -14.45898 -14.27945 -14.09689 -13.85202 -13.58616 -12.98229 -12.91761 -12.78457 -12.66471 -12.48584 -12.27627 -12.24275 -12.10218 -11.85628 -11.76184 -11.17526 -10.99598 -10.77401 -10.24558 -9.87799 -9.75899 -8.89428 -8.47729 -6.15812 0.61863 0.66997 1.13909 1.33431 1.42425 1.52429 1.74865 2.17211 2.44915 2.86888 3.18725 3.52833 3.74695 3.88037 4.05673 4.08029 4.18221 4.24299 4.33338 4.49043 4.50350 4.53891 4.57680 4.60819 4.73050 4.78013 4.81434 4.96527 5.09850 5.11592 5.15049 5.18374 5.31175 5.38550 5.46358 5.57099 5.71937 5.72178 5.78702 5.85934 6.02926 6.23824 6.66879 6.96872 7.38482 7.78500 8.76016 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029732 B = 0.002391 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.527980 B =11708.631587 C =12200.609209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.133 4.133 4 C -0.177 4.177 5 C 0.148 3.852 6 N -0.716 5.716 7 C 0.508 3.492 8 O -0.584 6.584 9 C -0.077 4.077 10 C -0.146 4.146 11 C -0.058 4.058 12 C -0.207 4.207 13 C 0.111 3.889 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.100 0.900 17 C -0.026 4.026 18 N -0.921 5.921 19 Si 1.021 2.979 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.269 1.269 23 C -0.245 4.245 24 C -0.061 4.061 25 H 0.052 0.948 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.106 0.894 31 H 0.133 0.867 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.419 0.581 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.112 0.888 39 H 0.273 0.727 40 H 0.117 0.883 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.033 -28.257 -2.380 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.152 4.152 4 C -0.195 4.195 5 C 0.025 3.975 6 N -0.369 5.369 7 C 0.296 3.704 8 O -0.463 6.463 9 C -0.116 4.116 10 C -0.147 4.147 11 C -0.076 4.076 12 C -0.226 4.226 13 C 0.061 3.939 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.117 0.883 17 C -0.223 4.223 18 N -0.560 5.560 19 Si 0.840 3.160 20 H -0.176 1.176 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.264 4.264 24 C -0.079 4.079 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.256 0.744 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.135 0.865 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.300 -27.550 -2.907 29.919 hybrid contribution -0.085 0.999 -0.216 1.026 sum -11.385 -26.551 -3.124 29.058 Atomic orbital electron populations 1.21721 0.94702 1.02283 1.01968 1.20704 0.96459 0.93058 1.03222 1.23143 0.95759 0.98222 0.98052 1.22799 1.00084 0.95194 1.01473 1.20260 1.00097 0.91566 0.85585 1.45891 1.61544 1.12607 1.16894 1.21258 0.77390 0.81615 0.90185 1.90755 1.43482 1.63671 1.48427 1.20533 1.05209 0.91350 0.94496 1.19284 0.94616 0.94997 1.05768 1.20896 0.95422 0.94417 0.96892 1.20453 0.99752 0.92250 1.10139 1.19942 0.93706 0.85538 0.94716 1.83934 1.44603 1.13023 1.72531 1.21862 0.97092 0.88167 1.41844 0.88280 1.26631 0.98751 0.99540 0.97343 1.70196 1.18851 1.20183 1.46758 0.84505 0.77283 0.76344 0.77883 1.17573 1.18982 1.19402 1.21231 0.96130 0.98609 1.10402 1.20946 0.99892 0.91019 0.96080 0.92836 0.91626 0.92726 0.90405 0.90557 0.87602 0.84931 0.92929 0.92223 0.74406 0.84937 0.85299 0.83462 0.86963 0.91836 0.86528 0.84417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 71.98 0.71 -0.42 16 2 C -0.10 -0.76 6.38 29.85 0.19 -0.57 16 3 C -0.13 -1.44 9.12 25.65 0.23 -1.21 16 4 C -0.18 -2.00 9.24 25.65 0.24 -1.76 16 5 C 0.15 2.60 6.11 85.64 0.52 3.13 16 6 N -0.72 -11.78 5.55 -466.79 -2.59 -14.37 16 7 C 0.51 12.63 7.82 87.66 0.69 13.32 16 8 O -0.58 -21.87 16.03 -3.03 -0.05 -21.92 16 9 C -0.08 -1.54 5.83 29.10 0.17 -1.37 16 10 C -0.15 -4.75 4.38 -19.83 -0.09 -4.84 16 11 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 12 C -0.21 -9.50 9.99 22.39 0.22 -9.28 16 13 C 0.11 5.93 6.65 22.58 0.15 6.08 16 14 O -0.23 -14.87 9.76 -22.66 -0.22 -15.09 16 15 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 16 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 17 C -0.03 -1.51 5.49 84.83 0.47 -1.05 16 18 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16 19 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 20 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 C -0.24 -11.50 9.17 22.39 0.21 -11.29 16 24 C -0.06 -2.28 9.69 22.25 0.22 -2.06 16 25 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 29 H 0.08 0.48 7.79 -2.39 -0.02 0.46 16 30 H 0.11 1.27 7.84 -2.91 -0.02 1.25 16 31 H 0.13 1.04 7.84 -2.91 -0.02 1.02 16 32 H 0.05 1.10 7.79 -2.38 -0.02 1.08 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.42 3.64 8.46 -92.71 -0.78 2.86 16 35 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 36 H 0.13 1.79 8.08 -2.38 -0.02 1.77 16 37 H 0.15 4.11 8.06 -2.91 -0.02 4.09 16 38 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 39 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 40 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 41 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -83.17 354.76 4.49 -78.68 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.25 Total: 22.11 kcal Atomic # 6 Polarization: -42.63 SS G_CDS: 4.79 Total: -37.84 kcal Atomic # 7 Polarization: -70.29 SS G_CDS: -2.29 Total: -72.58 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -0.27 Total: -37.01 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -83.17 4.49 -78.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295947674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.924 kcal (2) G-P(sol) polarization free energy of solvation -83.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds