Wall clock time and date at job start Tue Mar 31 2020 07:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 C 1.53007 * 109.46773 * 119.99611 * 2 1 3 5 5 N 1.46501 * 109.47034 * 174.99956 * 4 2 1 6 6 C 1.46496 * 119.99951 * 274.99983 * 5 4 2 7 7 C 1.50700 * 109.47090 * 274.99830 * 6 5 4 8 8 H 1.07993 * 120.00080 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99752 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00353 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99865 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47326 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47051 * 119.99954 * 11 9 7 14 14 H 1.48498 * 109.47557 * 240.00327 * 11 9 7 15 15 S 1.65599 * 119.99889 * 94.99747 * 5 4 2 16 16 O 1.42105 * 104.27797 * 206.07318 * 15 5 4 17 17 O 1.42101 * 104.27901 * 333.93026 * 15 5 4 18 18 C 1.81397 * 104.44825 * 90.00206 * 15 5 4 19 19 C 1.53009 * 109.47235 * 179.97438 * 18 15 5 20 20 C 1.52995 * 109.46990 * 179.97438 * 19 18 15 21 21 C 1.53004 * 117.50074 * 243.74762 * 20 19 18 22 22 C 1.53003 * 117.49949 * 175.08697 * 20 19 18 23 23 H 1.08999 * 109.47080 * 300.00721 * 1 2 3 24 24 H 1.08999 * 109.47047 * 60.00218 * 1 2 3 25 25 H 1.09000 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47080 * 239.99279 * 2 1 3 27 27 H 1.09006 * 109.46446 * 299.99862 * 3 2 1 28 28 H 1.08999 * 109.47576 * 59.99583 * 3 2 1 29 29 H 1.08999 * 109.47482 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47361 * 54.99801 * 4 2 1 31 31 H 1.09004 * 109.46883 * 294.99713 * 4 2 1 32 32 H 1.09001 * 109.47302 * 35.00502 * 6 5 4 33 33 H 1.09002 * 109.47116 * 154.99749 * 6 5 4 34 34 H 0.97001 * 120.00410 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.47032 * 299.99803 * 18 15 5 36 36 H 1.09000 * 109.47124 * 60.00075 * 18 15 5 37 37 H 1.08995 * 109.47216 * 300.00010 * 19 18 15 38 38 H 1.09000 * 109.46805 * 60.00123 * 19 18 15 39 39 H 1.09005 * 115.55273 * 29.42104 * 20 19 18 40 40 H 1.08995 * 117.49871 * 0.02562 * 21 20 19 41 41 H 1.08999 * 117.49868 * 145.02313 * 21 20 19 42 42 H 1.08992 * 117.50411 * 214.98549 * 22 20 19 43 43 H 1.09003 * 117.49431 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8264 1.1908 6 6 4.1260 -1.9353 0.4665 7 6 4.2202 -3.1367 1.3713 8 1 3.8511 -3.0798 2.3846 9 6 4.7776 -4.3085 0.9054 10 7 5.2275 -4.3777 -0.3285 11 14 4.8951 -5.7976 2.0271 12 1 4.3229 -5.4627 3.3559 13 1 4.1358 -6.9267 1.4321 14 1 6.3193 -6.1874 2.1850 15 16 4.4427 0.3083 1.9432 16 8 5.6628 0.2889 1.2150 17 8 3.6289 1.4726 1.9783 18 6 4.6898 -0.3464 3.6168 19 6 5.5573 0.6241 4.4211 20 6 5.7652 0.0722 5.8328 21 6 5.1929 0.8809 6.9989 22 6 6.7048 0.8438 6.7617 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.6767 1.9562 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 3.1301 1.4425 -0.0005 30 1 1.6053 -1.7197 1.2954 31 1 1.7515 -0.1581 2.1370 32 1 3.5238 -2.1846 -0.4072 33 1 5.1259 -1.6419 0.1467 34 1 5.6200 -5.2020 -0.6562 35 1 3.7236 -0.4630 4.1077 36 1 5.1870 -1.3146 3.5584 37 1 6.5234 0.7403 3.9301 38 1 5.0605 1.5925 4.4795 39 1 5.7521 -1.0143 5.9196 40 1 4.6680 1.8058 6.7602 41 1 4.8038 0.3264 7.8529 42 1 7.3096 0.2650 7.4597 43 1 7.1745 1.7448 6.3671 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301720132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:36:48 Heat of formation + Delta-G solvation = -67.114631 kcal Electronic energy + Delta-G solvation = -22429.576783 eV Core-core repulsion = 19216.265944 eV Total energy + Delta-G solvation = -3213.310840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -37.73508 -37.15911 -36.37802 -35.26852 -33.73209 -32.19499 -32.11978 -27.43622 -26.69525 -24.97776 -24.42475 -22.46074 -22.34055 -20.52438 -19.72077 -18.05202 -16.98777 -16.53590 -15.96207 -15.88849 -15.49756 -14.73722 -14.33536 -14.25072 -14.14976 -13.57303 -13.49619 -12.56751 -12.46161 -12.28345 -12.11516 -11.97548 -11.74681 -11.66516 -11.54055 -11.49737 -11.39363 -11.23074 -11.13292 -10.85465 -10.76106 -10.55752 -10.46566 -10.29083 -10.25345 -9.99178 -9.95990 -9.81366 -9.66417 -8.51915 -7.95418 -6.13243 -4.20830 0.94767 3.21846 3.29680 3.31314 3.40453 3.71269 4.31338 4.37997 4.67341 4.73674 4.75241 4.86546 5.07877 5.19942 5.27950 5.29483 5.36155 5.44631 5.49570 5.54851 5.60154 5.74844 5.81840 5.92333 6.01156 6.02412 6.09439 6.13322 6.22767 6.26934 6.29211 6.32033 6.49183 6.64155 6.82267 6.95089 7.38094 7.44333 7.67748 7.84006 8.13304 8.84396 9.45732 10.94465 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.007673 C = 0.004939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.467052 B = 3648.234234 C = 5667.791309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.136 4.136 4 C 0.139 3.861 5 N -0.982 5.982 6 C 0.244 3.756 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.065 3.935 10 N -0.887 5.887 11 Si 0.892 3.108 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 S 2.605 3.395 16 O -0.958 6.958 17 O -0.970 6.970 18 C -0.632 4.632 19 C -0.079 4.079 20 C -0.143 4.143 21 C -0.183 4.183 22 C -0.183 4.183 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.124 0.876 36 H 0.141 0.859 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 8.873 8.979 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.193 4.193 4 C 0.012 3.988 5 N -0.820 5.820 6 C 0.122 3.878 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.719 3.281 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 S 2.698 3.302 16 O -0.948 6.948 17 O -0.960 6.960 18 C -0.760 4.760 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.220 4.220 22 C -0.220 4.220 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.159 0.841 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.684 9.520 8.448 13.250 hybrid contribution -0.024 -1.688 1.100 2.014 sum -3.707 7.833 9.548 12.894 Atomic orbital electron populations 1.21752 0.95410 1.01441 1.01311 1.21556 0.95103 0.97186 0.99905 1.21921 1.01357 0.95275 1.00790 1.21138 0.80316 1.00680 0.96639 1.57339 1.14158 1.44225 1.66273 1.19210 0.94367 0.82204 0.92053 1.21630 1.40719 0.96849 0.99302 0.92009 1.24954 0.95047 0.98731 0.95091 1.69942 1.39796 1.27466 1.15284 0.86552 0.77894 0.82822 0.80811 1.19734 1.20855 1.20832 1.04995 0.74149 0.74427 0.76655 1.93566 1.46313 1.86715 1.68213 1.93587 1.68240 1.47001 1.87158 1.30747 1.08996 1.11934 1.24280 1.20872 0.99582 0.97105 0.94230 1.22276 1.04509 0.98824 0.90610 1.23081 0.96271 1.02388 1.00284 1.23008 0.92860 1.02880 1.03294 0.92920 0.92999 0.92723 0.90715 0.94251 0.91672 0.92924 0.90285 0.91811 0.94252 0.92851 0.92590 0.85752 0.84050 0.90217 0.90801 0.87192 0.88675 0.88886 0.88770 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 2 C -0.12 -1.88 3.12 -90.62 -0.28 -2.17 16 3 C -0.14 -2.25 7.57 37.16 0.28 -1.97 16 4 C 0.14 2.37 4.96 -4.04 -0.02 2.35 16 5 N -0.98 -19.63 2.42 -115.66 -0.28 -19.91 16 6 C 0.24 5.95 5.41 -5.20 -0.03 5.92 16 7 C -0.55 -14.03 9.38 -34.44 -0.32 -14.35 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 11 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 S 2.60 48.90 4.74 -107.50 -0.51 48.39 16 16 O -0.96 -21.65 16.53 -57.54 -0.95 -22.60 16 17 O -0.97 -18.05 13.01 -57.54 -0.75 -18.80 16 18 C -0.63 -9.81 6.14 37.16 0.23 -9.58 16 19 C -0.08 -1.08 5.50 -26.73 -0.15 -1.23 16 20 C -0.14 -1.75 5.73 -90.62 -0.52 -2.27 16 21 C -0.18 -1.90 10.18 -26.69 -0.27 -2.17 16 22 C -0.18 -1.90 10.25 -26.69 -0.27 -2.17 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 1.06 7.39 -51.93 -0.38 0.68 16 29 H 0.05 0.98 5.68 -51.93 -0.30 0.69 16 30 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 32 H 0.04 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.05 1.45 6.82 -51.93 -0.35 1.09 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.12 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.14 2.35 8.14 -51.92 -0.42 1.92 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.07 0.92 7.87 -51.93 -0.41 0.51 16 39 H 0.11 1.36 8.08 -51.93 -0.42 0.95 16 40 H 0.09 0.93 8.03 -51.93 -0.42 0.51 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -30.38 357.01 -10.21 -40.59 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -7.70 Total: 3.44 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: -1.11 Total: -27.47 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.46 Total: -44.37 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.70 Total: -41.40 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 48.90 SS G_CDS: -0.51 Total: 48.39 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.38 -10.21 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301720132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.520 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds