Wall clock time and date at job start Tue Mar 31 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 C 1.53004 * 109.47003 * 184.32622 * 3 2 1 5 5 C 1.50697 * 115.54992 * 272.40737 * 4 3 2 6 6 O 1.21289 * 120.00338 * 125.87300 * 5 4 3 7 7 N 1.34783 * 119.99839 * 305.86943 * 5 4 3 8 8 C 1.39925 * 119.99810 * 172.41715 * 7 5 4 9 9 C 1.38961 * 120.03582 * 27.18686 * 8 7 5 10 10 C 1.38163 * 120.06463 * 180.02562 * 9 8 7 11 11 C 1.38165 * 120.13758 * 359.95230 * 10 9 8 12 12 C 1.38910 * 120.07636 * 0.04302 * 11 10 9 13 13 O 1.35744 * 120.03562 * 180.02562 * 12 11 10 14 14 C 1.34834 * 116.99851 * 190.29790 * 13 12 11 15 15 H 1.07998 * 119.99999 * 7.68408 * 14 13 12 16 16 C 1.38650 * 119.99929 * 187.68609 * 14 13 12 17 17 N 1.31558 * 120.00241 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99853 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47412 * 90.00056 * 18 16 14 20 20 H 1.48504 * 109.47145 * 210.00076 * 18 16 14 21 21 H 1.48495 * 109.47288 * 329.99596 * 18 16 14 22 22 C 1.38716 * 120.03404 * 206.90455 * 8 7 5 23 23 C 1.53000 * 117.49750 * 126.69611 * 4 3 2 24 24 C 1.53006 * 117.49837 * 58.07303 * 4 3 2 25 25 H 1.09004 * 109.46826 * 300.00086 * 1 2 3 26 26 H 1.08991 * 109.47083 * 59.99449 * 1 2 3 27 27 H 1.09000 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46732 * 240.00458 * 2 1 3 29 29 H 1.08995 * 109.47109 * 120.00029 * 2 1 3 30 30 H 1.09001 * 109.46779 * 64.32774 * 3 2 1 31 31 H 1.08997 * 109.47178 * 304.32607 * 3 2 1 32 32 H 0.96998 * 119.99997 * 352.41222 * 7 5 4 33 33 H 1.07996 * 119.96910 * 359.96589 * 9 8 7 34 34 H 1.07998 * 119.92967 * 179.97438 * 10 9 8 35 35 H 1.08003 * 119.96136 * 180.02562 * 11 10 9 36 36 H 0.97003 * 120.00100 * 180.02562 * 17 16 14 37 37 H 1.08007 * 120.06754 * 0.02596 * 22 8 7 38 38 H 1.08999 * 117.50017 * 359.97438 * 23 4 3 39 39 H 1.09005 * 117.49490 * 145.02331 * 23 4 3 40 40 H 1.08990 * 117.49734 * 214.97903 * 24 4 3 41 41 H 1.08994 * 117.49745 * 359.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5662 1.4439 -0.1088 5 6 4.3110 1.3532 1.1981 6 8 5.1426 0.4858 1.3633 7 7 4.0533 2.2361 2.1833 8 6 4.6246 2.0593 3.4483 9 6 5.8317 1.3832 3.5779 10 6 6.3962 1.2078 4.8267 11 6 5.7634 1.7046 5.9500 12 6 4.5566 2.3815 5.8271 13 8 3.9359 2.8696 6.9312 14 6 2.6761 3.3240 6.7745 15 1 2.1617 3.1768 5.8364 16 6 2.0410 3.9801 7.8179 17 7 2.6678 4.1599 8.9605 18 14 0.2954 4.6089 7.6011 19 1 -0.6654 3.5528 8.0094 20 1 0.0949 5.8139 8.4457 21 1 0.0691 4.9601 6.1762 22 6 3.9897 2.5639 4.5736 23 6 4.1941 2.2826 -1.2238 24 6 4.1883 0.7560 -1.3257 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.7413 1.9334 0.9262 31 1 1.6148 1.9782 -0.8487 32 1 3.4717 2.9940 2.0154 33 1 6.3286 0.9936 2.7018 34 1 7.3342 0.6817 4.9250 35 1 6.2074 1.5662 6.9248 36 1 2.2234 4.6186 9.6906 37 1 3.0535 3.0934 4.4750 38 1 3.5200 2.8331 -1.8800 39 1 5.1463 2.7692 -1.0120 40 1 5.1364 0.2383 -1.1811 41 1 3.5103 0.3021 -2.0485 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000311668487.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:58 Heat of formation + Delta-G solvation = -21.164204 kcal Electronic energy + Delta-G solvation = -22545.724990 eV Core-core repulsion = 19198.962759 eV Total energy + Delta-G solvation = -3346.762231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -40.60716 -38.90446 -37.50293 -36.18919 -34.29270 -33.82271 -32.23270 -29.47735 -28.68297 -27.58958 -25.34644 -24.11117 -22.90985 -21.87315 -21.64708 -20.98720 -19.34808 -17.90431 -17.67197 -16.82467 -15.79081 -15.53598 -15.31446 -14.91964 -14.57421 -14.42609 -14.16093 -13.85260 -13.57111 -13.47997 -13.14546 -12.92887 -12.40038 -12.32316 -11.93691 -11.77234 -11.71682 -11.60845 -11.50799 -11.16801 -11.06999 -10.84575 -10.70579 -10.62399 -10.43860 -10.19137 -9.90362 -9.53731 -9.26122 -8.79500 -7.69864 -7.14594 -6.44718 -4.04812 1.94466 2.39334 2.72392 3.11184 3.11388 3.16316 3.19558 3.51616 3.95753 4.33677 4.51561 4.58614 4.60191 4.74643 4.96382 5.01029 5.10346 5.16057 5.29772 5.36750 5.48838 5.52878 5.63478 5.66305 5.68246 5.75867 5.89972 5.93576 6.04193 6.06745 6.09172 6.14945 6.25267 6.30528 6.64756 6.96962 7.00806 7.13953 7.33643 7.43532 7.74990 7.83648 7.99543 8.30092 9.00714 9.71979 10.73416 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.004440 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.727652 B = 6305.133844 C = 7719.252239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.161 4.161 5 C 0.548 3.452 6 O -0.517 6.517 7 N -0.661 5.661 8 C 0.177 3.823 9 C -0.218 4.218 10 C -0.065 4.065 11 C -0.201 4.201 12 C 0.168 3.832 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.088 0.912 16 C 0.040 3.960 17 N -0.862 5.862 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.277 1.277 21 H -0.269 1.269 22 C -0.258 4.258 23 C -0.156 4.156 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.407 0.593 33 H 0.138 0.862 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.270 0.730 37 H 0.129 0.871 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -3.358 -19.356 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.117 4.117 4 C -0.164 4.164 5 C 0.335 3.665 6 O -0.393 6.393 7 N -0.303 5.303 8 C 0.084 3.916 9 C -0.238 4.238 10 C -0.084 4.084 11 C -0.221 4.221 12 C 0.114 3.886 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.106 0.894 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.279 4.279 23 C -0.193 4.193 24 C -0.179 4.179 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.242 0.758 33 H 0.156 0.844 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.080 0.920 37 H 0.146 0.854 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.124 0.876 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.247 -3.862 -18.805 19.238 hybrid contribution -1.302 0.807 -0.107 1.536 sum -2.549 -3.055 -18.912 19.326 Atomic orbital electron populations 1.21776 0.95646 1.01767 1.01818 1.21523 0.95718 0.96224 1.02628 1.21175 0.89626 0.97924 1.02985 1.21530 0.95921 1.09693 0.89238 1.19564 0.82129 0.80760 0.84015 1.90625 1.32741 1.35461 1.80422 1.43385 1.49182 1.27745 1.09999 1.17530 0.92566 0.98678 0.82835 1.21088 0.96287 1.07846 0.98621 1.20605 0.98380 0.97680 0.91705 1.20287 0.96875 1.05958 0.99009 1.19087 0.91465 0.91566 0.86441 1.84036 1.27825 1.68385 1.27916 1.21236 0.86370 1.37574 1.01504 0.89427 1.25270 1.00071 0.96379 0.94741 1.70035 1.37427 1.39373 1.02918 0.85746 0.80686 0.78574 0.78593 1.19892 1.20256 1.19328 1.20773 1.03990 1.12103 0.91078 1.23146 1.02537 0.94533 0.99107 1.22980 1.02979 0.94808 0.97121 0.92522 0.92843 0.92667 0.91715 0.91747 0.90940 0.90818 0.75763 0.84447 0.86660 0.86454 0.92038 0.85361 0.87748 0.88332 0.87604 0.87890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.19 5.82 -26.73 -0.16 -1.34 16 3 C -0.08 -0.74 5.23 -26.73 -0.14 -0.88 16 4 C -0.16 -1.72 1.98 -155.66 -0.31 -2.03 16 5 C 0.55 8.22 7.06 -10.98 -0.08 8.14 16 6 O -0.52 -9.45 13.38 5.55 0.07 -9.37 16 7 N -0.66 -10.23 5.12 -9.88 -0.05 -10.28 16 8 C 0.18 3.46 6.44 -83.72 -0.54 2.92 16 9 C -0.22 -4.31 8.81 -39.34 -0.35 -4.65 16 10 C -0.06 -1.25 10.03 -39.64 -0.40 -1.65 16 11 C -0.20 -4.40 9.99 -39.36 -0.39 -4.79 16 12 C 0.17 4.12 6.62 -39.13 -0.26 3.86 16 13 O -0.18 -5.08 9.76 0.06 0.00 -5.08 16 14 C -0.39 -10.84 9.35 30.88 0.29 -10.55 16 15 H 0.09 2.25 5.50 -52.49 -0.29 1.96 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -25.21 13.67 55.48 0.76 -24.45 16 18 Si 0.94 20.29 29.55 -169.99 -5.02 15.26 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.26 -5.63 8.98 -39.21 -0.35 -5.98 16 23 C -0.16 -1.33 9.88 -26.73 -0.26 -1.59 16 24 C -0.14 -1.32 9.18 -26.72 -0.25 -1.57 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.57 7.02 -51.93 -0.36 0.20 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.71 7.56 -51.93 -0.39 0.32 16 31 H 0.07 0.54 7.89 -51.93 -0.41 0.14 16 32 H 0.41 5.16 8.49 -40.82 -0.35 4.82 16 33 H 0.14 2.70 5.52 -52.49 -0.29 2.41 16 34 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 35 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 36 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.13 2.74 5.88 -52.48 -0.31 2.43 16 38 H 0.10 0.68 8.04 -51.93 -0.42 0.26 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.11 1.13 7.81 -51.93 -0.41 0.73 16 41 H 0.10 0.77 7.46 -51.93 -0.39 0.38 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -32.23 343.87 -7.68 -39.91 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.70 Total: 8.90 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -2.92 Total: -20.06 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.71 Total: -34.73 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.07 Total: -14.46 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.23 -7.68 -39.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000311668487.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.741 kcal (2) G-P(sol) polarization free energy of solvation -32.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds