Wall clock time and date at job start Tue Mar 31 2020 07:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47037 * 59.99882 * 8 6 4 10 10 H 1.48501 * 109.46667 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47133 * 299.99829 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 12 16 16 C 1.47846 * 119.99557 * 179.72375 * 14 13 12 17 17 C 1.39595 * 120.13758 * 359.72071 * 16 14 13 18 18 C 1.38000 * 119.89862 * 179.79606 * 17 16 14 19 19 C 1.38142 * 120.10133 * 0.45222 * 18 17 16 20 20 C 1.38750 * 120.27822 * 359.80253 * 19 18 17 21 21 C 1.37709 * 120.18249 * 359.96730 * 20 19 18 22 22 C 1.51113 * 107.25749 * 180.02562 * 20 19 18 23 23 O 1.43938 * 105.95315 * 17.72108 * 22 20 19 24 24 C 1.43929 * 104.96870 * 331.48289 * 23 22 20 25 25 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 26 26 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 27 27 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 30 30 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 31 31 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 32 32 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 33 33 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 34 34 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 35 35 H 1.08003 * 120.05244 * 359.97438 * 17 16 14 36 36 H 1.07998 * 119.94666 * 180.22868 * 18 17 16 37 37 H 1.07999 * 120.09525 * 180.02562 * 21 20 19 38 38 H 1.09000 * 110.15352 * 136.83433 * 22 20 19 39 39 H 1.08994 * 110.15636 * 258.59860 * 22 20 19 40 40 H 1.08997 * 110.15282 * 147.64889 * 24 23 22 41 41 H 1.09003 * 110.15290 * 269.32722 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.8281 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2204 11 1 3.8075 -1.1192 -4.0077 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5806 -1.4760 3.7812 16 6 1.3940 0.2129 4.8766 17 6 0.5961 1.3515 4.7517 18 6 0.1400 1.9992 5.8817 19 6 0.4796 1.5279 7.1351 20 6 1.2767 0.3997 7.2659 21 6 1.7343 -0.2583 6.1461 22 6 1.4604 0.1497 8.7448 23 8 0.4212 0.8959 9.4043 24 6 0.1487 2.0063 8.5300 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 0.7090 1.1613 -3.4845 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7488 1.2493 34 1 0.9942 0.7584 2.3564 35 1 0.3337 1.7233 3.7723 36 1 -0.4804 2.8780 5.7860 37 1 2.3543 -1.1365 6.2496 38 1 1.3551 -0.9132 8.9620 39 1 2.4395 0.5043 9.0669 40 1 -0.9035 2.2838 8.5922 41 1 0.7772 2.8564 8.7955 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316043473.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:38:24 Heat of formation + Delta-G solvation = -54.032124 kcal Electronic energy + Delta-G solvation = -22486.761012 eV Core-core repulsion = 19138.573521 eV Total energy + Delta-G solvation = -3348.187491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97439 -39.41405 -37.26177 -36.33942 -33.46901 -31.82308 -31.77497 -30.67082 -28.22161 -26.24061 -25.77565 -25.34346 -24.29360 -22.65287 -21.89776 -20.06770 -18.90624 -17.73888 -16.67404 -16.63207 -16.08823 -15.92768 -15.35159 -14.84293 -14.73928 -14.55576 -14.13518 -13.74762 -13.56488 -13.15743 -12.95083 -12.93958 -12.72475 -12.29810 -12.19607 -11.94111 -11.43178 -11.24964 -11.13640 -10.88192 -10.75994 -10.43839 -10.37061 -10.24089 -9.73940 -9.68373 -9.32958 -9.15110 -8.86946 -8.84315 -8.49207 -8.35491 -6.05369 -4.15664 0.63058 1.07808 2.87746 3.28291 3.32654 3.35644 3.51979 3.60290 3.77602 3.95669 4.32651 4.37832 4.63406 4.88603 4.98014 5.01322 5.09709 5.11844 5.21486 5.23900 5.42391 5.49839 5.73082 5.98459 6.01153 6.10984 6.20829 6.27306 6.36206 6.45393 6.58611 6.71328 6.76513 6.88457 6.94104 6.97008 7.30319 7.50926 7.65738 7.95162 7.96497 8.10056 8.34064 8.57335 8.84697 9.50371 10.96111 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.042256 B = 0.003050 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.463018 B = 9178.300597 C = 9631.957192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.708 5.708 14 C 0.547 3.453 15 O -0.547 6.547 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.099 4.099 19 C -0.116 4.116 20 C -0.144 4.144 21 C -0.037 4.037 22 C 0.093 3.907 23 O -0.362 6.362 24 C 0.090 3.910 25 H 0.005 0.995 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.005 0.995 31 H 0.261 0.739 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.398 0.602 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.432 4.779 18.303 19.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.359 5.359 14 C 0.332 3.668 15 O -0.426 6.426 16 C -0.121 4.121 17 C -0.099 4.099 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.144 4.144 21 C -0.056 4.056 22 C 0.017 3.983 23 O -0.280 6.280 24 C 0.014 3.986 25 H 0.024 0.976 26 H 0.105 0.895 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.234 0.766 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.117 0.883 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.117 4.137 18.389 18.967 hybrid contribution 0.147 0.023 -1.217 1.226 sum -1.971 4.159 17.171 17.778 Atomic orbital electron populations 1.21841 0.97727 0.99275 1.00061 1.18361 0.92820 0.92768 0.90510 1.21843 0.98683 0.98321 1.00061 1.20943 1.31637 1.12178 0.89860 0.92423 1.24874 0.94810 0.94902 0.98855 1.69786 1.36600 1.22703 1.23391 0.86621 0.79254 0.79800 0.82122 1.20252 1.21307 1.20262 1.21792 0.98322 0.95908 0.83143 1.46262 1.52043 1.31692 1.05872 1.18175 0.80876 0.84297 0.83403 1.90744 1.38606 1.26372 1.86896 1.20115 1.00831 0.97156 0.94021 1.21396 0.95410 0.93997 0.99112 1.20322 1.00650 1.00588 0.90167 1.21244 0.98356 0.96383 0.95704 1.20957 1.00034 0.97444 0.95951 1.20444 0.97080 0.98729 0.89373 1.21752 0.91850 0.98051 0.86666 1.89081 1.56545 1.39380 1.43019 1.21793 1.02345 0.89899 0.84596 0.97616 0.89496 0.95341 0.95346 0.89492 0.97619 0.92905 0.92439 0.92431 0.76600 0.84697 0.84979 0.84297 0.88234 0.90298 0.88270 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.30 9.35 55.43 0.52 -22.79 16 8 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C 0.13 2.74 4.50 -4.04 -0.02 2.73 16 13 N -0.71 -12.57 4.91 -61.25 -0.30 -12.87 16 14 C 0.55 9.69 7.77 -12.33 -0.10 9.59 16 15 O -0.55 -11.46 16.35 5.32 0.09 -11.38 16 16 C -0.12 -1.68 5.88 -104.94 -0.62 -2.30 16 17 C -0.08 -0.95 9.54 -39.16 -0.37 -1.32 16 18 C -0.10 -0.99 10.03 -39.70 -0.40 -1.39 16 19 C -0.12 -1.20 6.33 -104.25 -0.66 -1.86 16 20 C -0.14 -1.61 6.31 -104.42 -0.66 -2.27 16 21 C -0.04 -0.49 9.59 -39.26 -0.38 -0.86 16 22 C 0.09 0.86 7.63 36.21 0.28 1.13 16 23 O -0.36 -3.75 11.72 -35.23 -0.41 -4.16 16 24 C 0.09 0.75 7.63 36.22 0.28 1.03 16 25 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 26 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 30 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.40 6.28 4.20 -40.82 -0.17 6.11 16 35 H 0.14 1.41 6.40 -52.48 -0.34 1.08 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.14 1.79 7.65 -52.49 -0.40 1.39 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -29.23 331.58 -8.22 -37.45 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.60 Total: 4.52 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -2.49 Total: -11.29 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.22 Total: -35.66 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.33 Total: -15.53 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.23 -8.22 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316043473.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.577 kcal (2) G-P(sol) polarization free energy of solvation -29.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds