Wall clock time and date at job start Tue Mar 31 2020 06:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 C 1.52992 * 109.47590 * 239.99322 * 2 1 3 5 5 C 1.53001 * 109.46675 * 119.99427 * 2 1 3 6 6 C 1.52999 * 109.47361 * 60.00227 * 5 2 1 7 7 N 1.46497 * 109.47167 * 179.97438 * 6 5 2 8 8 S 1.65602 * 119.99699 * 165.27707 * 7 6 5 9 9 O 1.42101 * 104.27617 * 180.79605 * 8 7 6 10 10 O 1.42093 * 104.27799 * 308.65309 * 8 7 6 11 11 C 1.81394 * 104.45036 * 64.72636 * 8 7 6 12 12 C 1.52998 * 109.47299 * 173.87111 * 11 8 7 13 13 C 1.50699 * 115.54907 * 65.26885 * 12 11 8 14 14 H 1.07999 * 120.00357 * 268.54409 * 13 12 11 15 15 C 1.37880 * 119.99986 * 88.55068 * 13 12 11 16 16 N 1.31511 * 120.00224 * 174.70141 * 15 13 12 17 17 Si 1.86801 * 120.00053 * 354.69864 * 15 13 12 18 18 H 1.48499 * 109.47053 * 92.55135 * 17 15 13 19 19 H 1.48496 * 109.47263 * 212.55623 * 17 15 13 20 20 H 1.48498 * 109.46965 * 332.55652 * 17 15 13 21 21 C 1.53004 * 117.50138 * 279.60087 * 12 11 8 22 22 C 1.53000 * 117.50175 * 210.93986 * 12 11 8 23 23 H 1.08992 * 109.47439 * 300.00684 * 1 2 3 24 24 H 1.08997 * 109.46662 * 60.00974 * 1 2 3 25 25 H 1.09002 * 109.46956 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47455 * 179.97438 * 3 2 1 27 27 H 1.09008 * 109.46818 * 299.99509 * 3 2 1 28 28 H 1.08999 * 109.47419 * 59.98953 * 3 2 1 29 29 H 1.08996 * 109.47410 * 300.00112 * 4 2 1 30 30 H 1.09000 * 109.46931 * 59.99851 * 4 2 1 31 31 H 1.09003 * 109.47490 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47668 * 300.00082 * 5 2 1 33 33 H 1.09005 * 109.47382 * 180.02562 * 5 2 1 34 34 H 1.09001 * 109.46558 * 60.00079 * 6 5 2 35 35 H 1.08992 * 109.46928 * 300.00084 * 6 5 2 36 36 H 0.97002 * 120.00318 * 345.00345 * 7 6 5 37 37 H 1.08996 * 109.47300 * 293.87248 * 11 8 7 38 38 H 1.08999 * 109.47414 * 53.87300 * 11 8 7 39 39 H 0.96997 * 120.00232 * 180.02562 * 16 15 13 40 40 H 1.09003 * 117.49542 * 0.02562 * 21 12 11 41 41 H 1.09000 * 117.49964 * 145.01302 * 21 12 11 42 42 H 1.08997 * 117.50053 * 214.97519 * 22 12 11 43 43 H 1.08998 * 117.49690 * 359.97438 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0399 -0.7211 1.2494 6 6 1.5299 -2.1636 1.2495 7 7 2.0187 -2.8543 2.4454 8 16 1.3433 -4.2953 2.9035 9 8 2.0422 -4.6487 4.0892 10 8 -0.0536 -4.0361 2.9261 11 6 1.7570 -5.4375 1.5564 12 6 1.3155 -6.8529 1.9341 13 6 -0.1711 -7.0533 2.0779 14 1 -0.6428 -6.9242 3.0408 15 6 -0.9291 -7.4018 0.9801 16 7 -2.2067 -7.6785 1.1242 17 14 -0.1414 -7.4809 -0.7118 18 1 0.3279 -8.8649 -0.9751 19 1 -1.1389 -7.0921 -1.7409 20 1 1.0131 -6.5484 -0.7643 21 6 2.2295 -7.6536 2.8640 22 6 2.1355 -8.0201 1.3807 23 1 -0.3634 0.5139 0.8898 24 1 -0.3632 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6769 -1.7490 -1.2490 30 1 1.6768 -0.2076 -2.1391 31 1 3.1301 -0.7209 -1.2493 32 1 1.6766 -0.2073 2.1393 33 1 3.1300 -0.7208 1.2497 34 1 1.8934 -2.6775 0.3596 35 1 0.4400 -2.1636 1.2494 36 1 2.7405 -2.4695 2.9668 37 1 1.2434 -5.1274 0.6464 38 1 2.8338 -5.4257 1.3878 39 1 -2.7399 -7.9240 0.3520 40 1 3.1451 -7.1718 3.2069 41 1 1.7555 -8.3255 3.5794 42 1 1.5997 -8.9331 1.1211 43 1 2.9892 -7.7796 0.7472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331812652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:24 Heat of formation + Delta-G solvation = -69.461046 kcal Electronic energy + Delta-G solvation = -22336.863768 eV Core-core repulsion = 19123.451180 eV Total energy + Delta-G solvation = -3213.412588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.42670 -37.12940 -36.31652 -35.17057 -34.56556 -32.16469 -28.67844 -28.49887 -27.44944 -27.39455 -25.52452 -23.12412 -21.71971 -19.73463 -18.96215 -18.46123 -16.97368 -16.65191 -16.11580 -15.42295 -15.11378 -14.98128 -14.68546 -14.33671 -14.10111 -13.85789 -13.54628 -12.99768 -12.66952 -12.62734 -12.36353 -12.20447 -12.07408 -11.83536 -11.55873 -11.52092 -11.39737 -11.21496 -11.18309 -10.93588 -10.77686 -10.71509 -10.65304 -10.51326 -10.37353 -10.09432 -9.74044 -9.22575 -9.15977 -8.66607 -8.45358 -6.17015 -4.24339 0.96290 3.21428 3.31155 3.32369 3.39396 4.34342 4.40565 4.57342 4.61372 4.63659 4.81098 4.89886 5.06081 5.12288 5.18899 5.28466 5.38332 5.45865 5.51667 5.52422 5.63037 5.68231 5.73687 5.79033 5.82733 5.89190 5.92536 5.95379 6.03614 6.09449 6.18280 6.22003 6.24667 6.29075 6.42639 6.65431 6.87908 7.06181 7.22756 7.59570 8.36953 8.88635 9.44139 10.94503 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.005547 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.940172 B = 5046.119084 C = 5727.744218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C -0.140 4.140 4 C -0.149 4.149 5 C -0.114 4.114 6 C 0.108 3.892 7 N -1.133 6.133 8 S 2.615 3.385 9 O -0.970 6.970 10 O -0.940 6.940 11 C -0.577 4.577 12 C 0.001 3.999 13 C -0.509 4.509 14 H 0.087 0.913 15 C 0.089 3.911 16 N -0.882 5.882 17 Si 0.873 3.127 18 H -0.275 1.275 19 H -0.290 1.290 20 H -0.257 1.257 21 C -0.177 4.177 22 C -0.185 4.185 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.409 0.591 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.267 0.733 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 14.553 -4.619 18.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.206 4.206 5 C -0.153 4.153 6 C -0.018 4.018 7 N -0.891 5.891 8 S 2.710 3.290 9 O -0.960 6.960 10 O -0.930 6.930 11 C -0.709 4.709 12 C -0.002 4.002 13 C -0.546 4.546 14 H 0.105 0.895 15 C -0.116 4.116 16 N -0.518 5.518 17 Si 0.701 3.299 18 H -0.201 1.201 19 H -0.217 1.217 20 H -0.181 1.181 21 C -0.214 4.214 22 C -0.224 4.224 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.102 0.898 36 H 0.242 0.758 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.964 14.301 -4.022 17.888 hybrid contribution 0.993 -0.067 -1.534 1.829 sum 10.958 14.234 -5.555 18.803 Atomic orbital electron populations 1.22006 0.94194 1.02759 1.01830 1.20529 0.96106 0.95376 0.94990 1.21858 1.00789 0.95291 1.01756 1.21989 1.00945 1.00806 0.96839 1.21825 1.00893 0.94455 0.98152 1.21481 1.00346 0.93260 0.86744 1.55992 1.53061 1.40881 1.39119 1.04909 0.74528 0.73532 0.76014 1.93514 1.75256 1.83267 1.44011 1.93576 1.30379 1.82701 1.86294 1.30299 1.08314 1.13462 1.18811 1.18857 0.94638 0.85208 1.01459 1.20343 0.86937 1.49257 0.98024 0.89516 1.24945 0.94467 0.93349 0.98829 1.69893 1.06590 1.44322 1.30958 0.86935 0.79522 0.79344 0.84142 1.20131 1.21677 1.18113 1.23023 1.00868 1.04756 0.92755 1.22984 1.01962 1.01045 0.96413 0.92386 0.92653 0.91685 0.92763 0.92641 0.92633 0.91959 0.92623 0.92623 0.91003 0.91343 0.91918 0.89772 0.75831 0.85695 0.87515 0.92294 0.90015 0.88625 0.88924 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.12 37.16 0.30 -1.17 16 2 C -0.07 -0.62 0.80 -154.51 -0.12 -0.74 16 3 C -0.14 -1.06 8.47 37.16 0.31 -0.75 16 4 C -0.15 -1.30 8.12 37.15 0.30 -1.00 16 5 C -0.11 -1.12 4.41 -26.73 -0.12 -1.23 16 6 C 0.11 1.36 5.42 -4.04 -0.02 1.33 16 7 N -1.13 -15.95 5.89 -10.62 -0.06 -16.01 16 8 S 2.62 51.09 5.19 -107.50 -0.56 50.54 16 9 O -0.97 -20.69 18.08 -57.54 -1.04 -21.73 16 10 O -0.94 -22.33 17.18 -57.54 -0.99 -23.32 16 11 C -0.58 -11.22 5.54 37.16 0.21 -11.01 16 12 C 0.00 0.03 0.79 -155.66 -0.12 -0.10 16 13 C -0.51 -14.21 8.77 -34.44 -0.30 -14.51 16 14 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 15 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 16 N -0.88 -26.68 13.96 55.43 0.77 -25.91 16 17 Si 0.87 20.88 24.96 -169.99 -4.24 16.64 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.26 -5.60 5.68 56.52 0.32 -5.28 16 21 C -0.18 -3.66 9.96 -26.69 -0.27 -3.92 16 22 C -0.19 -3.84 7.67 -26.69 -0.20 -4.05 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.40 8.14 -51.92 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 35 H 0.08 1.18 5.99 -51.93 -0.31 0.87 16 36 H 0.41 4.73 8.62 -34.47 -0.30 4.43 16 37 H 0.12 2.38 6.53 -51.93 -0.34 2.04 16 38 H 0.11 1.67 8.09 -51.92 -0.42 1.25 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.10 2.00 8.14 -51.93 -0.42 1.57 16 42 H 0.09 2.00 7.34 -51.93 -0.38 1.62 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 348.63 15.07 5.25 5.25 Total: -1.00 -33.85 348.63 -8.46 -42.31 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.46 Total: 6.97 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: -0.13 Total: -34.73 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.71 Total: -41.92 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.03 Total: -45.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.24 Total: 16.64 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.56 Total: 50.54 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.85 -8.46 -42.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331812652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.151 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds