Wall clock time and date at job start Tue Mar 31 2020 06:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46916 * 2 1 4 4 O 1.42900 * 109.47135 * 119.99815 * 2 1 3 5 5 C 1.52996 * 109.46896 * 239.99968 * 2 1 3 6 6 C 1.53947 * 113.74275 * 278.73917 * 5 2 1 7 7 N 1.47817 * 86.03578 * 222.08606 * 6 5 2 8 8 C 1.34771 * 134.45573 * 204.64621 * 7 6 5 9 9 O 1.21552 * 120.00154 * 174.44931 * 8 7 6 10 10 C 1.47886 * 119.99988 * 354.44248 * 8 7 6 11 11 C 1.39916 * 120.02657 * 353.10262 * 10 8 7 12 12 C 1.38334 * 120.35805 * 179.97438 * 11 10 8 13 13 C 1.37756 * 120.41150 * 0.02562 * 12 11 10 14 14 C 1.40749 * 120.03713 * 359.97438 * 13 12 11 15 15 C 1.41441 * 120.17119 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00371 * 25.15940 * 15 14 13 17 17 C 1.39939 * 119.99644 * 205.15334 * 15 14 13 18 18 N 1.30823 * 120.00416 * 16.60860 * 17 15 14 19 19 Si 1.86804 * 119.99808 * 196.60723 * 17 15 14 20 20 H 1.48497 * 109.47243 * 89.99973 * 19 17 15 21 21 H 1.48499 * 109.46906 * 210.00432 * 19 17 15 22 22 H 1.48507 * 109.47195 * 330.00074 * 19 17 15 23 23 C 1.38998 * 120.02116 * 172.82319 * 10 8 7 24 24 C 1.47582 * 91.04927 * 24.55047 * 7 6 5 25 25 H 1.08999 * 109.47268 * 299.99824 * 1 2 3 26 26 H 1.08991 * 109.47211 * 60.00077 * 1 2 3 27 27 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46985 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47303 * 300.00036 * 3 2 1 30 30 H 1.08999 * 109.47008 * 60.00016 * 3 2 1 31 31 H 0.96697 * 114.00199 * 179.97438 * 4 2 1 32 32 H 1.09000 * 112.94566 * 50.33596 * 5 2 1 33 33 H 1.08996 * 113.76849 * 336.35221 * 6 5 2 34 34 H 1.08996 * 113.76880 * 107.75169 * 6 5 2 35 35 H 1.07994 * 119.82081 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.78908 * 180.02562 * 12 11 10 37 37 H 1.07994 * 119.97703 * 180.02562 * 13 12 11 38 38 H 0.96993 * 120.00535 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.20595 * 0.02562 * 23 10 8 40 40 H 1.09007 * 113.76645 * 221.15016 * 24 7 6 41 41 H 1.08994 * 113.77041 * 89.76034 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 6 2.0447 -2.2553 -1.1207 7 7 3.3624 -2.2047 -1.7886 8 6 4.0807 -3.0741 -2.5265 9 8 5.1210 -2.7174 -3.0442 10 6 3.6032 -4.4622 -2.7062 11 6 2.4861 -4.9158 -1.9963 12 6 2.0332 -6.2127 -2.1596 13 6 2.6768 -7.0726 -3.0222 14 6 3.8022 -6.6341 -3.7448 15 6 4.4654 -7.5148 -4.6308 16 1 3.9297 -8.3429 -5.0708 17 6 5.8158 -7.3130 -4.9374 18 7 6.5489 -6.5354 -4.1828 19 14 6.5719 -8.1542 -6.4242 20 1 6.4272 -7.2788 -7.6149 21 1 8.0124 -8.4092 -6.1692 22 1 5.8769 -9.4433 -6.6702 23 6 4.2604 -5.3154 -3.5849 24 6 3.5744 -0.8197 -1.3250 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.9703 -0.7121 1.2327 32 1 1.5776 -0.3592 -2.1675 33 1 2.0874 -2.6098 -0.0909 34 1 1.2711 -2.7479 -1.7097 35 1 1.9741 -4.2496 -1.3179 36 1 1.1698 -6.5530 -1.6073 37 1 2.3170 -8.0835 -3.1446 38 1 7.4850 -6.3958 -4.3950 39 1 5.1206 -4.9683 -4.1380 40 1 4.0198 -0.1681 -2.0769 41 1 4.0675 -0.7515 -0.3554 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331947525.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:20 Heat of formation + Delta-G solvation = -32.887026 kcal Electronic energy + Delta-G solvation = -22887.520548 eV Core-core repulsion = 19540.249978 eV Total energy + Delta-G solvation = -3347.270571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.60436 -38.45307 -36.97460 -36.13862 -33.70960 -32.58120 -30.52713 -29.44070 -28.42572 -27.90978 -26.08603 -25.02278 -23.40519 -21.40198 -20.92628 -19.94665 -18.83513 -17.65498 -17.12029 -16.05531 -15.82900 -15.43591 -15.05023 -14.76632 -14.52788 -13.95990 -13.52053 -13.36081 -13.10630 -13.00410 -12.67146 -12.54172 -12.45909 -12.34892 -12.17767 -11.85518 -11.82192 -11.62926 -11.31303 -11.15680 -11.02593 -10.73032 -10.53793 -10.36818 -10.13473 -9.96728 -9.60471 -9.21412 -8.94668 -8.31681 -7.61274 -7.49090 -6.76982 -4.40163 2.21653 2.82557 3.08463 3.11703 3.16601 3.18046 3.83047 3.93228 3.94754 4.20817 4.56525 4.65460 4.70407 4.89900 5.00002 5.16516 5.33672 5.39238 5.42789 5.51771 5.59672 5.62154 5.68191 5.69950 5.75645 5.88233 5.98725 6.06651 6.19259 6.29797 6.38347 6.75972 7.00664 7.05847 7.23352 7.39821 7.45046 7.71711 7.82769 7.94571 8.14855 8.19392 8.51957 8.81899 8.84624 8.92621 10.17688 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.003695 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.405675 B = 7576.816206 C = 8208.998059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.136 3.864 3 C -0.177 4.177 4 O -0.556 6.556 5 C -0.155 4.155 6 C 0.115 3.885 7 N -0.646 5.646 8 C 0.586 3.414 9 O -0.545 6.545 10 C -0.125 4.125 11 C -0.225 4.225 12 C -0.101 4.101 13 C -0.210 4.210 14 C 0.098 3.902 15 C -0.462 4.462 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.785 5.785 19 Si 0.911 3.089 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.093 4.093 24 C 0.110 3.890 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.375 0.625 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.284 0.716 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 12.434 6.916 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.095 3.905 3 C -0.235 4.235 4 O -0.363 6.363 5 C -0.174 4.174 6 C -0.008 4.008 7 N -0.383 5.383 8 C 0.380 3.620 9 O -0.423 6.423 10 C -0.128 4.128 11 C -0.245 4.245 12 C -0.119 4.119 13 C -0.230 4.230 14 C 0.096 3.904 15 C -0.491 4.491 16 H 0.099 0.901 17 C -0.146 4.146 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.113 4.113 24 C -0.013 4.013 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.097 0.903 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.395 12.483 6.637 16.442 hybrid contribution 1.103 -0.337 -0.658 1.327 sum -7.293 12.146 5.980 15.377 Atomic orbital electron populations 1.21719 0.92284 1.03152 1.02308 1.21062 0.95009 0.90420 0.84040 1.22470 1.01723 0.96500 1.02805 1.86562 1.26873 1.79429 1.43470 1.24007 0.96422 0.97129 0.99850 1.23291 0.85588 0.93553 0.98378 1.49838 1.21100 1.14573 1.52758 1.18635 0.82108 0.84759 0.76483 1.90705 1.23963 1.78602 1.48989 1.19417 0.98949 0.91543 1.02861 1.20868 1.00057 0.97127 1.06444 1.20469 0.98704 0.93896 0.98833 1.21126 1.01688 0.98365 1.01790 1.17589 0.90886 0.91416 0.90518 1.19585 0.94695 1.11336 1.23469 0.90103 1.25963 0.97467 0.94493 0.96697 1.69787 1.08181 1.29646 1.33366 0.86264 0.78302 0.80293 0.81598 1.19197 1.20234 1.18592 1.21639 0.99651 0.92230 0.97756 1.23003 0.95058 0.84039 0.99183 0.91914 0.91130 0.91523 0.92128 0.91431 0.91756 0.77635 0.87436 0.88854 0.89414 0.87810 0.88927 0.88643 0.90482 0.84945 0.90252 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.83 37.16 0.33 -0.75 16 2 C 0.14 1.16 0.99 -90.62 -0.09 1.08 16 3 C -0.18 -1.26 8.64 37.16 0.32 -0.94 16 4 O -0.56 -5.42 11.60 -35.23 -0.41 -5.82 16 5 C -0.15 -1.60 3.22 -89.70 -0.29 -1.89 16 6 C 0.11 1.52 5.61 -2.84 -0.02 1.51 16 7 N -0.65 -11.18 3.60 -179.24 -0.64 -11.83 16 8 C 0.59 13.52 7.98 -12.31 -0.10 13.42 16 9 O -0.54 -14.38 17.09 5.32 0.09 -14.29 16 10 C -0.12 -3.06 5.87 -105.04 -0.62 -3.67 16 11 C -0.23 -4.89 9.09 -38.92 -0.35 -5.24 16 12 C -0.10 -2.19 10.01 -39.72 -0.40 -2.59 16 13 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 14 C 0.10 2.65 5.57 -106.87 -0.59 2.06 16 15 C -0.46 -12.32 9.05 -37.73 -0.34 -12.66 16 16 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 17 C 0.07 1.87 5.16 -17.34 -0.09 1.78 16 18 N -0.79 -21.25 10.94 55.55 0.61 -20.64 16 19 Si 0.91 19.07 29.59 -169.99 -5.03 14.03 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.09 -2.54 8.23 -38.44 -0.32 -2.85 16 24 C 0.11 1.40 7.40 -2.97 -0.02 1.37 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.41 7.52 -51.93 -0.39 0.02 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 2.89 7.40 45.56 0.34 3.23 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.09 1.20 6.94 -51.93 -0.36 0.84 16 34 H 0.09 1.19 6.89 -51.93 -0.36 0.83 16 35 H 0.10 1.90 4.05 -52.49 -0.21 1.69 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 38 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 39 H 0.13 3.92 5.78 -52.49 -0.30 3.62 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.79 6.62 -51.93 -0.34 0.44 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -31.89 334.06 -8.29 -40.18 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.98 Total: 8.18 kcal Atomic # 6 Polarization: -11.89 SS G_CDS: -2.95 Total: -14.84 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: -0.04 Total: -32.47 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.32 Total: -20.12 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.89 -8.29 -40.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331947525.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.293 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds