Wall clock time and date at job start Tue Mar 31 2020 06:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46978 * 2 1 4 4 O 1.42896 * 109.47401 * 240.00029 * 2 1 3 5 5 C 1.53004 * 109.47106 * 119.99768 * 2 1 3 6 6 C 1.53501 * 114.20413 * 179.97438 * 5 2 1 7 7 N 1.47067 * 87.98374 * 220.34932 * 6 5 2 8 8 C 1.34782 * 136.05490 * 207.09084 * 7 6 5 9 9 O 1.21581 * 119.99861 * 5.56237 * 8 7 6 10 10 C 1.47646 * 119.99691 * 185.56465 * 8 7 6 11 11 C 1.40013 * 119.88978 * 186.63534 * 10 8 7 12 12 C 1.36322 * 120.10012 * 179.71857 * 11 10 8 13 13 C 1.40889 * 119.89250 * 0.55931 * 12 11 10 14 14 C 1.41111 * 120.10314 * 179.69601 * 13 12 11 15 15 H 1.07996 * 119.99850 * 205.45468 * 14 13 12 16 16 C 1.40229 * 119.99902 * 25.45842 * 14 13 12 17 17 N 1.30650 * 120.00256 * 16.72395 * 16 14 13 18 18 Si 1.86797 * 120.00013 * 196.72498 * 16 14 13 19 19 H 1.48503 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47056 * 119.99676 * 18 16 14 21 21 H 1.48502 * 109.47017 * 240.00220 * 18 16 14 22 22 C 1.40884 * 119.79532 * 359.71377 * 13 12 11 23 23 C 1.36319 * 119.89015 * 0.02562 * 22 13 12 24 24 C 1.47066 * 87.88822 * 27.34186 * 7 6 5 25 25 H 1.09000 * 109.47430 * 300.00099 * 1 2 3 26 26 H 1.08999 * 109.47170 * 60.00356 * 1 2 3 27 27 H 1.09004 * 109.46967 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47007 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46879 * 299.99822 * 3 2 1 30 30 H 1.09002 * 109.47278 * 60.00233 * 3 2 1 31 31 H 0.96698 * 114.00457 * 179.97438 * 4 2 1 32 32 H 1.08997 * 113.28297 * 313.06916 * 5 2 1 33 33 H 1.08999 * 113.46318 * 105.57125 * 6 5 2 34 34 H 1.08999 * 113.46958 * 335.12699 * 6 5 2 35 35 H 1.07998 * 119.95190 * 0.02562 * 11 10 8 36 36 H 1.07996 * 120.05316 * 180.25083 * 12 11 10 37 37 H 0.96989 * 120.00071 * 180.02562 * 17 16 14 38 38 H 1.07994 * 120.05982 * 179.97438 * 22 13 12 39 39 H 1.08000 * 119.94816 * 180.02562 * 23 22 13 40 40 H 1.09003 * 113.46201 * 87.43656 * 24 7 6 41 41 H 1.08993 * 113.46900 * 217.87699 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5698 -0.7851 1.3587 7 7 3.4254 -2.1651 1.8462 8 6 4.1350 -2.9940 2.6373 9 8 5.1247 -2.5855 3.2133 10 6 3.7104 -4.3982 2.8045 11 6 4.3638 -5.2191 3.7316 12 6 3.9715 -6.5146 3.8935 13 6 2.9145 -7.0303 3.1177 14 6 2.5091 -8.3725 3.2771 15 1 2.0249 -8.8906 2.4626 16 6 2.7348 -9.0334 4.4931 17 7 3.0101 -8.3456 5.5693 18 14 2.6419 -10.8973 4.5744 19 1 2.3162 -11.4358 3.2293 20 1 3.9502 -11.4391 5.0216 21 1 1.5847 -11.2987 5.5370 22 6 2.2639 -6.2020 2.1821 23 6 2.6598 -4.9064 2.0310 24 6 2.1692 -2.2446 1.0856 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.9703 -0.7115 -1.2331 32 1 1.5390 -0.4048 2.1641 33 1 3.9805 -0.1026 2.1027 34 1 4.0770 -0.7156 0.3964 35 1 5.1765 -4.8240 4.3229 36 1 4.4733 -7.1459 4.6118 37 1 3.1666 -8.8027 6.4102 38 1 1.4536 -6.5931 1.5849 39 1 2.1614 -4.2704 1.3143 40 1 2.3074 -2.5598 0.0513 41 1 1.3870 -2.8055 1.5968 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332045993.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:32 Heat of formation + Delta-G solvation = -33.383974 kcal Electronic energy + Delta-G solvation = -22670.944679 eV Core-core repulsion = 19323.652559 eV Total energy + Delta-G solvation = -3347.292120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.68968 -38.41964 -37.07963 -36.18888 -33.87051 -32.58233 -30.38350 -29.73026 -28.55311 -27.82865 -26.01023 -25.35368 -23.13983 -21.37003 -20.84552 -20.00679 -18.80983 -17.57753 -17.26182 -16.45476 -15.82284 -15.38873 -15.30495 -14.92014 -14.08530 -13.90203 -13.54169 -13.39026 -13.14288 -12.95726 -12.71170 -12.47518 -12.31926 -12.27334 -12.19405 -11.97035 -11.81877 -11.75494 -11.36867 -11.24963 -11.10016 -10.94572 -10.62319 -10.38306 -10.16317 -9.94561 -9.47180 -9.33384 -8.97199 -8.29059 -7.68210 -7.54399 -7.00314 -4.59698 2.22927 2.90847 2.96330 3.01654 3.04394 3.29060 3.75145 3.83036 3.93938 4.21233 4.51814 4.65006 4.72732 4.90341 5.01069 5.21568 5.37588 5.42763 5.44485 5.53235 5.58196 5.63675 5.69269 5.73558 5.79302 5.89583 6.01403 6.07235 6.21544 6.29373 6.44757 6.81795 6.86549 7.08136 7.12232 7.45223 7.46195 7.63348 7.85052 7.90858 8.06545 8.29609 8.44424 8.64215 8.76714 9.01964 9.91495 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.003382 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.304715 B = 8277.664347 C = 8892.279521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.139 3.861 3 C -0.177 4.177 4 O -0.556 6.556 5 C -0.157 4.157 6 C 0.108 3.892 7 N -0.651 5.651 8 C 0.600 3.400 9 O -0.571 6.571 10 C -0.278 4.278 11 C -0.037 4.037 12 C -0.181 4.181 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.073 3.927 17 N -0.771 5.771 18 Si 0.914 3.086 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.236 4.236 23 C -0.059 4.059 24 C 0.109 3.891 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.375 0.625 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.121 0.879 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 11.976 -8.254 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.098 3.902 3 C -0.235 4.235 4 O -0.363 6.363 5 C -0.177 4.177 6 C -0.015 4.015 7 N -0.387 5.387 8 C 0.399 3.601 9 O -0.453 6.453 10 C -0.283 4.283 11 C -0.057 4.057 12 C -0.200 4.200 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.148 4.148 17 N -0.394 5.394 18 Si 0.737 3.263 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.256 4.256 23 C -0.077 4.077 24 C -0.014 4.014 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.223 0.777 32 H 0.128 0.872 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.447 11.933 -7.630 14.845 hybrid contribution 0.553 -0.728 0.312 0.966 sum -3.894 11.205 -7.318 13.938 Atomic orbital electron populations 1.21721 0.92251 1.03193 1.02299 1.21008 0.95010 0.90373 0.83834 1.22469 1.01690 0.96491 1.02809 1.86567 1.26794 1.79402 1.43536 1.23873 0.96694 0.97234 0.99860 1.22781 0.94887 0.85088 0.98790 1.49391 1.25720 1.14519 1.49078 1.18277 0.80737 0.84902 0.76195 1.90646 1.27666 1.77573 1.49379 1.18831 1.07531 0.92094 1.09818 1.20484 0.96787 0.93643 0.94768 1.21011 0.99621 0.94948 1.04435 1.17805 0.88396 0.92406 0.88844 1.19868 1.32441 0.96404 0.98406 0.89717 1.26109 0.92187 1.01513 0.95002 1.69751 1.30863 1.38540 1.00268 0.86166 0.78976 0.81371 0.79782 1.18086 1.19378 1.19682 1.20701 1.04038 0.94106 1.06745 1.20842 0.94639 0.95588 0.96658 1.23097 0.86996 0.94243 0.97087 0.91123 0.91909 0.91495 0.92146 0.91750 0.91421 0.77693 0.87194 0.90785 0.91043 0.88259 0.86102 0.90243 0.88510 0.87977 0.89058 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.84 37.16 0.33 -0.80 16 2 C 0.14 1.22 1.04 -90.62 -0.09 1.12 16 3 C -0.18 -1.28 8.62 37.16 0.32 -0.96 16 4 O -0.56 -5.39 11.45 -35.23 -0.40 -5.79 16 5 C -0.16 -1.67 3.44 -89.96 -0.31 -1.98 16 6 C 0.11 1.37 7.14 -8.49 -0.06 1.31 16 7 N -0.65 -11.30 3.66 -186.22 -0.68 -11.98 16 8 C 0.60 13.52 8.00 -12.42 -0.10 13.42 16 9 O -0.57 -14.48 17.12 5.29 0.09 -14.39 16 10 C -0.28 -6.63 5.89 -104.73 -0.62 -7.25 16 11 C -0.04 -0.94 9.52 -39.61 -0.38 -1.32 16 12 C -0.18 -4.71 8.63 -39.27 -0.34 -5.05 16 13 C 0.13 3.33 5.57 -106.80 -0.59 2.74 16 14 C -0.44 -11.15 9.05 -37.75 -0.34 -11.50 16 15 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 16 C 0.07 1.74 5.15 -17.31 -0.09 1.65 16 17 N -0.77 -19.04 10.94 55.56 0.61 -18.43 16 18 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.24 -5.59 9.73 -39.27 -0.38 -5.97 16 23 C -0.06 -1.30 9.06 -39.61 -0.36 -1.65 16 24 C 0.11 1.48 5.53 -8.36 -0.05 1.43 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.41 7.48 -51.93 -0.39 0.02 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.37 2.79 7.52 45.56 0.34 3.13 16 32 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.75 6.73 -51.93 -0.35 0.40 16 35 H 0.10 2.47 7.64 -52.49 -0.40 2.07 16 36 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 37 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.10 1.91 4.15 -52.49 -0.22 1.69 16 40 H 0.09 1.17 6.89 -51.93 -0.36 0.81 16 41 H 0.08 1.19 6.74 -51.93 -0.35 0.84 16 LS Contribution 333.89 15.07 5.03 5.03 Total: -1.00 -30.57 333.89 -8.42 -38.99 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -4.98 Total: 8.88 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: -3.06 Total: -14.81 kcal Atomic # 7 Polarization: -30.34 SS G_CDS: -0.07 Total: -30.42 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.31 Total: -20.19 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.57 -8.42 -38.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332045993.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.607 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds