Wall clock time and date at job start Tue Mar 31 2020 07:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.46657 * 2 1 4 4 C 1.52995 * 109.47306 * 119.99905 * 2 1 3 5 5 H 1.09002 * 112.77872 * 196.63074 * 4 2 1 6 6 C 1.53751 * 113.55574 * 327.49028 * 4 2 1 7 7 C 1.53502 * 83.25998 * 140.98494 * 6 4 2 8 8 N 1.47067 * 113.46652 * 65.85435 * 4 2 1 9 9 S 1.65603 * 136.06036 * 38.12749 * 8 4 2 10 10 O 1.42096 * 104.27825 * 147.67765 * 9 8 4 11 11 O 1.42097 * 104.27381 * 19.81823 * 9 8 4 12 12 C 1.81406 * 104.44999 * 263.74844 * 9 8 4 13 13 C 1.52999 * 109.47133 * 182.45935 * 12 9 8 14 14 C 1.52999 * 109.46837 * 60.00106 * 13 12 9 15 15 C 1.52997 * 109.47029 * 300.00321 * 13 12 9 16 16 C 1.50698 * 109.47274 * 180.02562 * 13 12 9 17 17 H 1.08007 * 119.99723 * 0.02562 * 16 13 12 18 18 C 1.37876 * 120.00205 * 179.72680 * 16 13 12 19 19 N 1.31509 * 119.99806 * 0.27619 * 18 16 13 20 20 Si 1.86800 * 119.99950 * 180.27349 * 18 16 13 21 21 H 1.48498 * 109.47011 * 60.00015 * 20 18 16 22 22 H 1.48499 * 109.46787 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47289 * 299.99898 * 20 18 16 24 24 H 1.09001 * 109.46914 * 307.73765 * 1 2 3 25 25 H 1.08994 * 109.47660 * 67.74515 * 1 2 3 26 26 H 1.08998 * 109.46946 * 187.74452 * 1 2 3 27 27 H 1.09005 * 109.46555 * 240.00501 * 2 1 3 28 28 H 1.08999 * 109.46815 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47555 * 300.06069 * 3 2 1 30 30 H 1.08998 * 109.47325 * 60.06932 * 3 2 1 31 31 H 1.09000 * 114.39658 * 27.42514 * 6 4 2 32 32 H 1.08997 * 114.26574 * 254.53940 * 6 4 2 33 33 H 1.08997 * 113.46589 * 218.98284 * 7 6 4 34 34 H 1.09002 * 113.51594 * 88.55225 * 7 6 4 35 35 H 1.08999 * 109.46973 * 62.46273 * 12 9 8 36 36 H 1.08999 * 109.47104 * 302.46183 * 12 9 8 37 37 H 1.09007 * 109.47082 * 179.97438 * 14 13 12 38 38 H 1.09004 * 109.47318 * 300.00006 * 14 13 12 39 39 H 1.08999 * 109.47157 * 59.99900 * 14 13 12 40 40 H 1.08999 * 109.47257 * 299.99773 * 15 13 12 41 41 H 1.08996 * 109.47445 * 60.00206 * 15 13 12 42 42 H 1.09007 * 109.46847 * 179.97438 * 15 13 12 43 43 H 0.97000 * 120.00185 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 3.0887 -0.5105 1.4596 6 6 1.1244 -0.5529 2.4728 7 6 1.4837 -2.0251 2.7177 8 7 1.7151 -2.1553 1.2712 9 16 1.6467 -3.3797 0.1583 10 8 2.0185 -4.5396 0.8900 11 8 2.4377 -2.9125 -0.9257 12 6 -0.1018 -3.4611 -0.3182 13 6 -0.3074 -4.6084 -1.3094 14 6 0.1047 -5.9282 -0.6543 15 6 0.5497 -4.3672 -2.5536 16 6 -1.7597 -4.6757 -1.7057 17 1 -2.4655 -3.9703 -1.2924 18 6 -2.1865 -5.6337 -2.6008 19 7 -1.3270 -6.4923 -3.1044 20 14 -3.9854 -5.7122 -3.0979 21 1 -4.3804 -4.4284 -3.7311 22 1 -4.1838 -6.8220 -4.0644 23 1 -4.8219 -5.9483 -1.8939 24 1 -0.3633 0.6290 0.8127 25 1 -0.3634 0.3892 -0.9510 26 1 -0.3633 -1.0183 0.1385 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4425 -0.0005 29 1 1.6757 1.9567 -0.8894 30 1 1.6776 1.9560 0.8906 31 1 0.0754 -0.3834 2.2301 32 1 1.5080 0.1325 3.2285 33 1 0.6463 -2.6220 3.0789 34 1 2.3854 -2.1590 3.3153 35 1 -0.3953 -2.5209 -0.7850 36 1 -0.7123 -3.6330 0.5682 37 1 -0.0422 -6.7457 -1.3602 38 1 1.1553 -5.8793 -0.3679 39 1 -0.5059 -6.1001 0.2322 40 1 0.2562 -3.4270 -3.0203 41 1 1.6002 -4.3184 -2.2673 42 1 0.4035 -5.1849 -3.2595 43 1 -1.6271 -7.1661 -3.7344 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332070102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:55 Heat of formation + Delta-G solvation = -44.531719 kcal Electronic energy + Delta-G solvation = -23257.235237 eV Core-core repulsion = 20044.903666 eV Total energy + Delta-G solvation = -3212.331571 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.90006 -36.49789 -36.28130 -35.24726 -34.30574 -31.66485 -28.52650 -27.46973 -26.42414 -25.71452 -25.65780 -25.22101 -21.78246 -20.19673 -19.28702 -18.08388 -17.13767 -16.10067 -15.98102 -15.73011 -15.07118 -14.79544 -14.49934 -13.93719 -13.75483 -13.36841 -12.96871 -12.80432 -12.57705 -12.50958 -12.44507 -12.04967 -11.89329 -11.48149 -11.42462 -11.23307 -11.12846 -11.04641 -10.95794 -10.90116 -10.68544 -10.58751 -10.33988 -10.26968 -10.15038 -10.06510 -9.64426 -9.53320 -8.90443 -8.62890 -8.39904 -6.03100 -4.15218 0.83214 3.11865 3.26705 3.32246 3.33720 4.33068 4.34685 4.42758 4.54267 4.71961 4.83281 4.95367 5.10447 5.20673 5.22074 5.45567 5.49681 5.55047 5.65076 5.67494 5.69842 5.72108 5.85658 5.87408 6.06308 6.14040 6.21776 6.27073 6.37846 6.46068 6.66864 6.72144 6.79713 6.91102 7.05143 7.31726 7.50535 7.67623 7.97787 8.09563 8.33022 8.82885 9.49987 10.98251 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.005642 C = 0.005169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.721800 B = 4961.823503 C = 5415.483196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.138 4.138 4 C 0.164 3.836 5 H 0.088 0.912 6 C -0.159 4.159 7 C 0.126 3.874 8 N -1.048 6.048 9 S 2.612 3.388 10 O -0.963 6.963 11 O -0.961 6.961 12 C -0.581 4.581 13 C 0.083 3.917 14 C -0.165 4.165 15 C -0.161 4.161 16 C -0.501 4.501 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.035 0.965 40 H 0.037 0.963 41 H 0.023 0.977 42 H 0.096 0.904 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 13.532 9.812 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C -0.196 4.196 4 C 0.058 3.942 5 H 0.106 0.894 6 C -0.198 4.198 7 C 0.000 4.000 8 N -0.885 5.885 9 S 2.713 3.287 10 O -0.954 6.954 11 O -0.951 6.951 12 C -0.714 4.714 13 C 0.080 3.920 14 C -0.223 4.223 15 C -0.219 4.219 16 C -0.541 4.541 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.724 3.276 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.139 0.861 36 H 0.134 0.866 37 H 0.113 0.887 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.042 0.958 42 H 0.114 0.886 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.899 12.663 9.250 16.429 hybrid contribution -1.599 0.045 -0.274 1.623 sum 3.300 12.708 8.976 15.904 Atomic orbital electron populations 1.22111 0.94707 1.02642 1.02038 1.21499 0.96674 0.97042 0.98943 1.21705 1.00924 0.95080 1.01907 1.22165 0.98572 0.78695 0.94812 0.89420 1.23835 1.01610 0.96599 0.97721 1.22291 1.00637 0.95819 0.81258 1.60514 1.85091 1.22983 1.19908 1.05145 0.79063 0.71788 0.72663 1.93522 1.82686 1.47233 1.71924 1.93515 1.67588 1.80475 1.53565 1.30663 1.20541 1.09948 1.10258 1.17928 0.97669 0.87310 0.89050 1.22303 0.97538 1.01905 1.00558 1.22245 0.95556 1.02747 1.01356 1.20891 0.91678 1.15623 1.25890 0.92370 1.24936 0.97636 0.95350 0.95791 1.69790 1.33712 1.18131 1.30550 0.86596 0.84996 0.77649 0.78378 1.20284 1.21163 1.20273 0.92035 0.92249 0.91901 0.89105 0.92593 0.92318 0.92546 0.87987 0.90185 0.90669 0.90321 0.86055 0.86561 0.88697 0.95096 0.94566 0.94418 0.95837 0.88554 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 7.86 37.16 0.29 -1.53 16 2 C -0.12 -1.47 3.03 -90.62 -0.27 -1.75 16 3 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 4 C 0.16 1.94 3.82 -72.26 -0.28 1.66 16 5 H 0.09 0.94 8.12 -51.93 -0.42 0.52 16 6 C -0.16 -1.43 7.60 -26.08 -0.20 -1.62 16 7 C 0.13 1.42 8.71 -8.50 -0.07 1.34 16 8 N -1.05 -15.65 3.53 -117.73 -0.42 -16.07 16 9 S 2.61 51.79 4.88 -107.50 -0.52 51.26 16 10 O -0.96 -21.70 15.53 -57.54 -0.89 -22.59 16 11 O -0.96 -21.03 14.75 -57.54 -0.85 -21.88 16 12 C -0.58 -11.73 4.48 37.16 0.17 -11.56 16 13 C 0.08 2.04 0.52 -155.66 -0.08 1.96 16 14 C -0.17 -4.18 7.77 37.16 0.29 -3.89 16 15 C -0.16 -4.05 7.78 37.16 0.29 -3.76 16 16 C -0.50 -13.26 8.01 -34.44 -0.28 -13.54 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 19 N -0.88 -24.32 9.35 55.43 0.52 -23.80 16 20 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.81 4.93 -51.93 -0.26 0.56 16 27 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.88 5.69 -51.93 -0.30 0.59 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.12 2.25 6.14 -51.92 -0.32 1.94 16 36 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 37 H 0.09 2.56 6.08 -51.93 -0.32 2.25 16 38 H 0.03 0.75 5.35 -51.93 -0.28 0.47 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.02 0.56 5.58 -51.93 -0.29 0.27 16 42 H 0.10 2.59 6.06 -51.93 -0.31 2.28 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 332.03 15.07 5.00 5.00 Total: -1.00 -31.76 332.03 -9.05 -40.82 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.98 Total: 3.53 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 0.11 Total: -31.98 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.10 Total: -39.86 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.74 Total: -44.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.52 Total: 51.26 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.76 -9.05 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332070102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.716 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds