Wall clock time and date at job start Tue Mar 31 2020 06:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47548 * 2 1 4 4 C 1.50701 * 109.46808 * 120.00406 * 2 1 3 5 5 C 1.38353 * 119.85660 * 120.00154 * 4 2 1 6 6 C 1.37960 * 120.14606 * 179.97438 * 5 4 2 7 7 C 1.39573 * 119.85473 * 359.97226 * 6 5 4 8 8 C 1.47840 * 120.15013 * 179.97438 * 7 6 5 9 9 O 1.21552 * 120.00233 * 173.12385 * 8 7 6 10 10 N 1.34785 * 119.99605 * 353.12385 * 8 7 6 11 11 C 1.47581 * 134.49082 * 174.44445 * 10 8 7 12 12 C 1.53953 * 86.11551 * 155.35376 * 11 10 8 13 13 O 1.42897 * 113.74309 * 269.15468 * 12 11 10 14 14 C 1.50700 * 113.73677 * 137.94805 * 12 11 10 15 15 H 1.07996 * 120.00258 * 1.92997 * 14 12 11 16 16 C 1.37881 * 119.99691 * 181.92512 * 14 12 11 17 17 N 1.31509 * 120.00092 * 180.02562 * 16 14 12 18 18 Si 1.86797 * 119.99899 * 0.02562 * 16 14 12 19 19 H 1.48495 * 109.47433 * 269.99940 * 18 16 14 20 20 H 1.48506 * 109.47309 * 30.00269 * 18 16 14 21 21 H 1.48503 * 109.46998 * 149.99765 * 18 16 14 22 22 C 1.47812 * 134.45496 * 354.30701 * 10 8 7 23 23 C 1.39575 * 119.70861 * 0.25499 * 7 6 5 24 24 C 1.37964 * 119.85518 * 359.51336 * 23 7 6 25 25 H 1.08999 * 109.47417 * 300.00312 * 1 2 3 26 26 H 1.09004 * 109.46893 * 59.99825 * 1 2 3 27 27 H 1.08998 * 109.47765 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.46813 * 239.99710 * 2 1 3 29 29 H 1.08998 * 109.47298 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47167 * 300.00007 * 3 2 1 31 31 H 1.08998 * 109.47137 * 59.99981 * 3 2 1 32 32 H 1.07996 * 119.93001 * 359.96884 * 5 4 2 33 33 H 1.07999 * 120.07664 * 179.97438 * 6 5 4 34 34 H 1.09001 * 113.76918 * 41.06030 * 11 10 8 35 35 H 1.08999 * 113.76816 * 269.65734 * 11 10 8 36 36 H 0.96696 * 113.99993 * 178.08009 * 13 12 11 37 37 H 0.96998 * 120.00612 * 180.02562 * 17 16 14 38 38 H 1.08995 * 113.76562 * 90.38308 * 22 10 8 39 39 H 1.09001 * 113.83965 * 318.91777 * 22 10 8 40 40 H 1.08007 * 120.07582 * 179.72527 * 23 7 6 41 41 H 1.08001 * 119.93026 * 180.22959 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 1.2304 5 6 2.8275 -1.8351 1.1000 6 6 3.2910 -2.4899 2.2224 7 6 2.9565 -2.0151 3.4915 8 6 3.4491 -2.7120 4.6987 9 8 3.2627 -2.2286 5.7983 10 7 4.1050 -3.8835 4.5800 11 6 4.8055 -4.7768 5.5230 12 6 4.5108 -5.9012 4.5135 13 8 3.2775 -6.5818 4.7542 14 6 5.6685 -6.8416 4.2978 15 1 6.5841 -6.7076 4.8546 16 6 5.5586 -7.8732 3.3896 17 7 6.5687 -8.6942 3.2017 18 14 3.9751 -8.1047 2.4261 19 1 3.0636 -9.0023 3.1801 20 1 3.3196 -6.7871 2.2272 21 1 4.2834 -8.7086 1.1049 22 6 4.4089 -4.7901 3.4528 23 6 2.1499 -0.8828 3.6161 24 6 1.6969 -0.2345 2.4856 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.0859 -2.2013 0.1175 33 1 3.9113 -3.3679 2.1193 34 1 4.2926 -4.8976 6.4771 35 1 5.8665 -4.5532 5.6342 36 1 3.0745 -7.2692 4.1051 37 1 6.4916 -9.4197 2.5625 38 1 5.3532 -4.5704 2.9546 39 1 3.5800 -4.9215 2.7572 40 1 1.8838 -0.5129 4.5953 41 1 1.0758 0.6439 2.5806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335840938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:14 Heat of formation + Delta-G solvation = -15.083864 kcal Electronic energy + Delta-G solvation = -22922.215520 eV Core-core repulsion = 19575.716952 eV Total energy + Delta-G solvation = -3346.498568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -40.28882 -39.15166 -37.54254 -35.34581 -34.52415 -32.58817 -31.04863 -30.46006 -28.56843 -27.39692 -25.87282 -25.55874 -23.78590 -22.45472 -20.77136 -19.92920 -19.11438 -17.57481 -17.03037 -16.48581 -15.95597 -15.84197 -14.94192 -14.81873 -14.47064 -14.04458 -13.82231 -13.68113 -13.61897 -13.29954 -13.19109 -13.01690 -12.62148 -12.54295 -12.38935 -12.18012 -12.01535 -11.46203 -11.36793 -11.27465 -11.05895 -10.90368 -10.75853 -10.64951 -10.16083 -9.80084 -9.35388 -9.05129 -8.96489 -8.73775 -8.68634 -8.05130 -6.45810 -4.52318 0.94583 1.40000 2.95986 2.98138 3.10904 3.11612 3.33391 3.99146 3.99841 4.41502 4.56738 4.60590 4.79566 4.94088 4.94256 4.98768 5.09446 5.19904 5.36052 5.38651 5.40407 5.52198 5.56456 5.66305 5.71304 5.80235 5.95371 5.97860 5.98272 6.01699 6.02225 6.15641 6.29076 6.31517 6.38624 6.53189 6.54373 6.58265 6.91976 7.16253 7.99537 8.22260 8.47526 8.57715 8.59285 9.11459 10.66315 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020201 B = 0.004416 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.738968 B = 6339.327133 C = 7182.554338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.144 4.144 4 C -0.060 4.060 5 C -0.128 4.128 6 C -0.094 4.094 7 C -0.126 4.126 8 C 0.572 3.428 9 O -0.557 6.557 10 N -0.628 5.628 11 C 0.128 3.872 12 C 0.196 3.804 13 O -0.552 6.552 14 C -0.537 4.537 15 H 0.092 0.908 16 C 0.081 3.919 17 N -0.875 5.875 18 Si 0.856 3.144 19 H -0.266 1.266 20 H -0.256 1.256 21 H -0.282 1.282 22 C 0.056 3.944 23 C -0.062 4.062 24 C -0.128 4.128 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.125 0.875 33 H 0.142 0.858 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.352 0.648 37 H 0.271 0.729 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.133 0.867 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 14.694 -8.764 19.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.201 4.201 4 C -0.060 4.060 5 C -0.146 4.146 6 C -0.112 4.112 7 C -0.129 4.129 8 C 0.362 3.638 9 O -0.437 6.437 10 N -0.361 5.361 11 C 0.007 3.993 12 C 0.155 3.845 13 O -0.363 6.363 14 C -0.575 4.575 15 H 0.110 0.890 16 C -0.124 4.124 17 N -0.511 5.511 18 Si 0.684 3.316 19 H -0.192 1.192 20 H -0.181 1.181 21 H -0.209 1.209 22 C -0.067 4.067 23 C -0.081 4.081 24 C -0.145 4.145 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.204 0.796 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.093 0.907 40 H 0.151 0.849 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.962 15.349 -7.762 19.395 hybrid contribution -0.682 -0.688 -1.166 1.516 sum -9.644 14.661 -8.928 19.689 Atomic orbital electron populations 1.21862 0.94209 1.02187 1.01921 1.20176 0.96066 0.96126 0.95390 1.21858 1.01378 0.94981 1.01920 1.20045 0.96215 0.95048 0.94715 1.21027 0.99006 0.95908 0.98642 1.22011 0.98150 0.99402 0.91636 1.20018 1.01723 0.97807 0.93313 1.17913 0.78362 0.79074 0.88422 1.90708 1.59313 1.66095 1.27633 1.50014 1.52452 1.19787 1.13837 1.23314 0.96649 0.84368 0.95008 1.20562 0.83761 0.89438 0.90730 1.86479 1.41570 1.53196 1.55033 1.21233 0.99682 1.12013 1.24560 0.88996 1.24996 0.96279 0.95111 0.96038 1.69849 1.30558 1.16187 1.34471 0.87379 0.84032 0.79663 0.80516 1.19246 1.18111 1.20870 1.24826 1.00256 0.88841 0.92786 1.21241 0.94288 0.93252 0.99279 1.20885 1.01508 1.00578 0.91577 0.92357 0.92372 0.92414 0.90315 0.92416 0.92375 0.92366 0.85657 0.84063 0.90401 0.88537 0.79608 0.91847 0.88385 0.90683 0.84900 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.00 37.16 0.33 -0.79 16 2 C -0.06 -0.51 3.09 -91.78 -0.28 -0.79 16 3 C -0.14 -1.10 9.00 37.16 0.33 -0.76 16 4 C -0.06 -0.68 4.79 -104.53 -0.50 -1.18 16 5 C -0.13 -1.61 9.65 -39.64 -0.38 -1.99 16 6 C -0.09 -1.42 9.08 -39.19 -0.36 -1.78 16 7 C -0.13 -2.14 5.87 -104.97 -0.62 -2.76 16 8 C 0.57 11.66 7.99 -12.33 -0.10 11.56 16 9 O -0.56 -12.73 17.10 5.32 0.09 -12.64 16 10 N -0.63 -12.80 3.60 -179.21 -0.64 -13.44 16 11 C 0.13 2.67 8.23 -2.96 -0.02 2.64 16 12 C 0.20 4.41 1.06 -90.84 -0.10 4.31 16 13 O -0.55 -12.94 13.35 -35.23 -0.47 -13.41 16 14 C -0.54 -13.60 9.19 -34.44 -0.32 -13.91 16 15 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 16 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 17 N -0.88 -24.08 13.96 55.43 0.77 -23.31 16 18 Si 0.86 18.42 24.31 -169.99 -4.13 14.29 16 19 H -0.27 -5.64 7.05 56.52 0.40 -5.24 16 20 H -0.26 -5.11 5.16 56.52 0.29 -4.81 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.06 1.09 4.68 -2.84 -0.01 1.08 16 23 C -0.06 -0.91 9.59 -39.18 -0.38 -1.29 16 24 C -0.13 -1.52 8.69 -39.64 -0.34 -1.87 16 25 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.63 7.87 -51.92 -0.41 0.22 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 32 H 0.13 1.30 7.94 -52.49 -0.42 0.88 16 33 H 0.14 2.16 4.10 -52.49 -0.22 1.94 16 34 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 35 H 0.10 1.85 8.09 -51.93 -0.42 1.43 16 36 H 0.35 7.81 3.57 45.56 0.16 7.97 16 37 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.10 1.79 8.00 -51.93 -0.42 1.38 16 39 H 0.08 1.42 5.59 -51.93 -0.29 1.12 16 40 H 0.13 1.94 7.67 -52.48 -0.40 1.54 16 41 H 0.12 1.19 7.08 -52.49 -0.37 0.81 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -29.91 328.76 -7.59 -37.50 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.33 Total: 11.59 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -2.84 Total: -5.54 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.13 Total: -36.75 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.38 Total: -26.04 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.13 Total: 14.29 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.91 -7.59 -37.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335840938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.416 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds