Wall clock time and date at job start Tue Mar 31 2020 06:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47229 * 2 1 4 4 O 1.42894 * 110.77940 * 298.21373 * 3 2 1 5 5 C 1.55147 * 110.72125 * 174.97122 * 3 2 1 6 6 C 1.55134 * 101.48931 * 205.96776 * 5 3 2 7 7 N 1.47428 * 104.71634 * 37.29564 * 6 5 3 8 8 C 1.34780 * 125.64558 * 155.81353 * 7 6 5 9 9 O 1.21585 * 119.99933 * 4.92021 * 8 7 6 10 10 C 1.47639 * 119.99969 * 184.90974 * 8 7 6 11 11 C 1.40007 * 119.89600 * 352.13859 * 10 8 7 12 12 C 1.36326 * 120.10688 * 179.75518 * 11 10 8 13 13 C 1.40882 * 119.88784 * 0.53786 * 12 11 10 14 14 C 1.41117 * 120.10286 * 179.69684 * 13 12 11 15 15 H 1.08000 * 120.00158 * 156.83884 * 14 13 12 16 16 C 1.40228 * 119.99676 * 336.83312 * 14 13 12 17 17 N 1.30653 * 120.00112 * 339.51980 * 16 14 13 18 18 Si 1.86795 * 119.99921 * 159.52416 * 16 14 13 19 19 H 1.48499 * 109.47398 * 94.72941 * 18 16 14 20 20 H 1.48499 * 109.47034 * 214.73054 * 18 16 14 21 21 H 1.48502 * 109.47307 * 334.72902 * 18 16 14 22 22 C 1.40887 * 119.79964 * 359.71395 * 13 12 11 23 23 C 1.36318 * 119.88778 * 0.02562 * 22 13 12 24 24 C 1.47021 * 108.70711 * 335.55546 * 7 6 5 25 25 H 1.08993 * 109.47275 * 300.00335 * 1 2 3 26 26 H 1.09003 * 109.47065 * 60.00410 * 1 2 3 27 27 H 1.09003 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47541 * 239.99728 * 2 1 3 29 29 H 1.09003 * 109.47065 * 119.99590 * 2 1 3 30 30 H 0.96699 * 114.00631 * 61.78398 * 4 3 2 31 31 H 1.09000 * 111.01046 * 324.20862 * 5 3 2 32 32 H 1.09006 * 111.00363 * 88.02655 * 5 3 2 33 33 H 1.08998 * 110.50034 * 278.45929 * 6 5 3 34 34 H 1.08993 * 110.34360 * 156.05650 * 6 5 3 35 35 H 1.08005 * 119.94790 * 359.97438 * 11 10 8 36 36 H 1.07993 * 120.05240 * 180.22809 * 12 11 10 37 37 H 0.96992 * 119.99984 * 179.97438 * 17 16 14 38 38 H 1.08000 * 120.06036 * 180.02562 * 22 13 12 39 39 H 1.08000 * 119.95187 * 179.97438 * 23 22 13 40 40 H 1.09001 * 109.88571 * 120.69994 * 24 7 6 41 41 H 1.09000 * 109.88275 * 241.87095 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6135 2.1310 -1.1773 5 6 3.5859 1.4782 0.1272 6 6 3.8107 2.8706 0.7732 7 7 2.6886 3.0317 1.7158 8 6 2.6854 3.8260 2.8047 9 8 3.6326 4.5547 3.0285 10 6 1.5315 3.8113 3.7257 11 6 0.3750 3.1001 3.3841 12 6 -0.6911 3.0796 4.2335 13 6 -0.6319 3.7849 5.4516 14 6 -1.7352 3.7720 6.3313 15 1 -1.5898 3.9706 7.3829 16 6 -3.0204 3.5013 5.8401 17 7 -3.2795 3.6547 4.5687 18 14 -4.3620 2.9216 7.0034 19 1 -5.1607 4.0879 7.4584 20 1 -5.2472 1.9602 6.2982 21 1 -3.7446 2.2557 8.1784 22 6 0.5321 4.5035 5.7886 23 6 1.5951 4.5138 4.9352 24 6 1.5716 2.1872 1.2679 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 0.6532 2.2044 -1.2640 31 1 3.9430 0.6798 0.7776 32 1 4.0599 1.4224 -0.8528 33 1 3.7837 3.6524 0.0143 34 1 4.7606 2.8916 1.3072 35 1 0.3286 2.5639 2.4476 36 1 -1.5814 2.5276 3.9707 37 1 -4.1684 3.4671 4.2289 38 1 0.5822 5.0453 6.7215 39 1 2.4877 5.0647 5.1924 40 1 1.3147 1.4687 2.0463 41 1 0.7072 2.8090 1.0346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336503636.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:28 Heat of formation + Delta-G solvation = -53.254665 kcal Electronic energy + Delta-G solvation = -23280.956154 eV Core-core repulsion = 19932.802376 eV Total energy + Delta-G solvation = -3348.153778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21451 -38.24986 -37.00744 -35.13985 -33.92309 -32.88441 -31.40002 -29.63449 -29.41660 -27.82697 -26.05664 -24.54074 -22.51827 -21.21730 -21.07162 -20.09772 -19.15661 -17.60343 -17.22810 -16.44537 -15.56701 -15.49210 -15.17138 -14.69136 -14.35862 -13.98104 -13.75880 -13.42568 -13.16109 -12.88505 -12.84740 -12.57067 -12.26728 -12.17932 -11.92523 -11.77596 -11.64866 -11.40547 -11.26169 -11.22900 -11.12384 -10.96147 -10.64678 -10.46992 -10.09077 -10.00300 -9.45941 -9.19865 -8.90197 -8.22018 -7.71277 -7.54994 -7.07450 -4.60317 2.23990 2.88120 2.92523 2.99340 3.03588 3.51172 3.71786 3.82552 4.01534 4.42597 4.51893 4.56800 4.64491 5.02755 5.18140 5.29573 5.38116 5.52131 5.58940 5.61974 5.72768 5.78515 5.83096 5.85717 5.97252 6.01317 6.11332 6.15935 6.16668 6.32577 6.71165 6.78908 6.81421 7.05730 7.13689 7.43821 7.54885 7.65851 7.79953 7.86754 8.05459 8.18424 8.39012 8.62280 8.75908 9.04038 9.84868 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.004805 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.374981 B = 5826.361718 C = 7122.165734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.139 4.139 3 C 0.113 3.887 4 O -0.551 6.551 5 C -0.119 4.119 6 C 0.112 3.888 7 N -0.623 5.623 8 C 0.586 3.414 9 O -0.573 6.573 10 C -0.282 4.282 11 C -0.099 4.099 12 C -0.182 4.182 13 C 0.128 3.872 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.077 3.923 17 N -0.769 5.769 18 Si 0.910 3.090 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.239 4.239 23 C -0.022 4.022 24 C 0.081 3.919 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.377 0.623 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.422 -8.601 -8.674 12.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.178 4.178 3 C 0.072 3.928 4 O -0.357 6.357 5 C -0.157 4.157 6 C -0.011 4.011 7 N -0.358 5.358 8 C 0.384 3.616 9 O -0.455 6.455 10 C -0.286 4.286 11 C -0.117 4.117 12 C -0.202 4.202 13 C 0.124 3.876 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.145 4.145 17 N -0.392 5.392 18 Si 0.734 3.266 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.180 1.180 22 C -0.259 4.259 23 C -0.041 4.041 24 C -0.042 4.042 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.226 0.774 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.104 0.896 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.368 -8.117 -8.754 12.404 hybrid contribution -1.445 -0.211 0.511 1.547 sum 1.923 -8.329 -8.243 11.875 Atomic orbital electron populations 1.21860 0.95169 1.02554 1.02419 1.22070 0.96844 0.95645 1.03196 1.22331 0.95110 0.90782 0.84593 1.86510 1.27784 1.78872 1.42572 1.22862 0.93247 0.97752 1.01853 1.22106 0.91088 0.95893 0.92025 1.48215 1.15100 1.45979 1.26504 1.18392 0.87136 0.77440 0.78665 1.90639 1.38419 1.41555 1.74867 1.18821 0.95533 1.15321 0.98940 1.21747 0.93106 0.97527 0.99306 1.20971 0.98260 1.04175 0.96758 1.17808 0.91487 0.86648 0.91629 1.19846 0.91116 1.39686 0.96409 0.89745 1.26097 1.00474 0.92301 0.95630 1.69764 1.23089 1.31364 1.14962 0.86251 0.79666 0.79596 0.81117 1.19214 1.19705 1.18041 1.20694 0.96234 1.07542 1.01397 1.20358 0.96788 0.94613 0.92356 1.23202 0.90749 0.94318 0.95976 0.91705 0.92534 0.92095 0.90871 0.90531 0.77397 0.89381 0.89333 0.91746 0.90782 0.86044 0.86415 0.90253 0.88433 0.88228 0.89590 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.45 37.16 0.35 -1.10 16 2 C -0.14 -1.30 5.11 -26.73 -0.14 -1.44 16 3 C 0.11 1.31 0.94 -88.79 -0.08 1.23 16 4 O -0.55 -6.49 13.05 -35.23 -0.46 -6.95 16 5 C -0.12 -1.37 6.27 -24.47 -0.15 -1.53 16 6 C 0.11 1.69 6.89 -2.41 -0.02 1.67 16 7 N -0.62 -11.29 3.32 -176.93 -0.59 -11.88 16 8 C 0.59 13.22 7.80 -12.42 -0.10 13.12 16 9 O -0.57 -14.38 16.65 5.29 0.09 -14.30 16 10 C -0.28 -6.64 5.89 -104.73 -0.62 -7.26 16 11 C -0.10 -2.20 8.52 -39.61 -0.34 -2.53 16 12 C -0.18 -4.43 8.65 -39.27 -0.34 -4.77 16 13 C 0.13 3.26 5.58 -106.80 -0.60 2.66 16 14 C -0.44 -11.00 9.04 -37.74 -0.34 -11.34 16 15 H 0.08 2.01 7.93 -52.49 -0.42 1.59 16 16 C 0.08 1.77 5.09 -17.31 -0.09 1.68 16 17 N -0.77 -18.18 11.02 55.56 0.61 -17.57 16 18 Si 0.91 17.03 29.61 -169.99 -5.03 12.00 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.24 -5.87 9.73 -39.27 -0.38 -6.26 16 23 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 24 C 0.08 1.20 3.24 -3.06 -0.01 1.19 16 25 H 0.06 0.65 7.14 -51.93 -0.37 0.28 16 26 H 0.06 0.44 6.96 -51.93 -0.36 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.38 3.35 7.62 45.56 0.35 3.70 16 31 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 32 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.14 8.09 -51.93 -0.42 0.72 16 35 H 0.12 2.28 2.72 -59.42 -0.16 2.12 16 36 H 0.12 2.86 6.14 -52.49 -0.32 2.54 16 37 H 0.29 6.05 8.29 -40.82 -0.34 5.71 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.10 2.34 7.65 -52.49 -0.40 1.93 16 40 H 0.09 1.28 6.07 -51.93 -0.32 0.97 16 41 H 0.08 1.21 6.70 -51.93 -0.35 0.87 16 LS Contribution 328.79 15.07 4.95 4.95 Total: -1.00 -29.91 328.79 -8.51 -38.41 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -4.86 Total: 10.91 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.22 Total: -15.58 kcal Atomic # 7 Polarization: -29.47 SS G_CDS: 0.02 Total: -29.45 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.37 Total: -21.25 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.91 -8.51 -38.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336503636.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.841 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds