Wall clock time and date at job start Tue Mar 31 2020 05:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.50661 * 2 1 4 4 C 1.53101 * 109.50308 * 239.86870 * 2 1 3 5 5 N 1.47015 * 109.25250 * 183.21801 * 4 2 1 6 6 C 1.46905 * 110.99743 * 182.39165 * 5 4 2 7 7 C 1.52995 * 109.47126 * 302.41310 * 6 5 4 8 8 C 1.53000 * 109.47223 * 180.02562 * 7 6 5 9 9 S 1.81005 * 109.47417 * 179.97438 * 8 7 6 10 10 C 1.76189 * 100.00097 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00127 * 0.02562 * 10 9 8 12 12 C 1.38805 * 120.00013 * 180.02562 * 10 9 8 13 13 N 1.31633 * 120.00034 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99929 * 359.97438 * 12 10 9 15 15 H 1.48498 * 109.47174 * 270.00277 * 14 12 10 16 16 H 1.48501 * 109.47062 * 30.00228 * 14 12 10 17 17 H 1.48490 * 109.46901 * 150.00205 * 14 12 10 18 18 C 1.47009 * 110.75490 * 58.61894 * 5 4 2 19 19 C 1.53101 * 109.25693 * 301.37895 * 18 5 4 20 20 H 1.09001 * 109.50795 * 296.87648 * 19 18 5 21 21 C 1.52996 * 109.50690 * 176.78494 * 19 18 5 22 22 O 1.42905 * 109.46933 * 175.00180 * 21 19 18 23 23 O 1.43011 * 109.50491 * 120.08682 * 2 1 3 24 24 H 1.08998 * 109.46609 * 299.91750 * 1 2 3 25 25 H 1.09003 * 109.46683 * 59.91194 * 1 2 3 26 26 H 1.09000 * 109.47085 * 179.91346 * 1 2 3 27 27 H 1.08994 * 109.47227 * 180.08885 * 3 2 1 28 28 H 1.09003 * 109.46730 * 300.08549 * 3 2 1 29 29 H 1.08993 * 109.47274 * 60.08542 * 3 2 1 30 30 H 1.08997 * 109.50599 * 63.28264 * 4 2 1 31 31 H 1.08999 * 109.50720 * 303.15036 * 4 2 1 32 32 H 1.08997 * 109.47249 * 182.40682 * 6 5 4 33 33 H 1.09002 * 109.47225 * 62.41022 * 6 5 4 34 34 H 1.08997 * 109.47570 * 59.99568 * 7 6 5 35 35 H 1.09003 * 109.47328 * 299.99782 * 7 6 5 36 36 H 1.09005 * 109.47152 * 59.99562 * 8 7 6 37 37 H 1.09002 * 109.47073 * 299.99677 * 8 7 6 38 38 H 0.97001 * 119.99662 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.50843 * 61.31314 * 18 5 4 40 40 H 1.08998 * 109.50956 * 181.40629 * 18 5 4 41 41 H 1.09004 * 109.47061 * 294.99866 * 21 19 18 42 42 H 1.08994 * 109.47287 * 55.00103 * 21 19 18 43 43 H 0.96703 * 113.99869 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 6 2.0413 -0.7244 -1.2482 5 7 3.5093 -0.7890 -1.2041 6 6 4.0447 -1.4279 -2.4138 7 6 3.4475 -2.8292 -2.5572 8 6 4.0056 -3.4949 -3.8167 9 16 3.2997 -5.1530 -3.9861 10 6 4.0903 -5.6718 -5.4727 11 1 4.7773 -5.0095 -5.9784 12 6 3.8302 -6.9317 -5.9939 13 7 4.4205 -7.3190 -7.1049 14 14 2.6425 -8.0775 -5.1188 15 1 3.3875 -8.9090 -4.1397 16 1 1.6151 -7.2757 -4.4069 17 1 1.9807 -8.9585 -6.1142 18 6 3.9640 -1.4885 0.0063 19 6 3.4335 -0.7564 1.2419 20 1 3.8540 0.2486 1.2780 21 6 3.8358 -1.5242 2.5026 22 8 3.4422 -0.7817 3.6584 23 8 2.0076 -0.6758 1.1664 24 1 -0.3632 0.5126 0.8907 25 1 -0.3633 0.5152 -0.8892 26 1 -0.3633 -1.0277 -0.0016 27 1 3.1309 1.4415 -0.0016 28 1 1.6767 1.9566 -0.8893 29 1 1.6793 1.9558 0.8907 30 1 1.7273 -0.1804 -2.1389 31 1 1.6332 -1.7348 -1.2753 32 1 5.1294 -1.5013 -2.3362 33 1 3.7825 -0.8302 -3.2868 34 1 2.3628 -2.7558 -2.6348 35 1 3.7096 -3.4270 -1.6842 36 1 5.0903 -3.5684 -3.7386 37 1 3.7438 -2.8973 -4.6899 38 1 4.2390 -8.1996 -7.4689 39 1 3.5866 -2.5110 -0.0008 40 1 5.0536 -1.5028 0.0309 41 1 3.3419 -2.4959 2.5094 42 1 4.9165 -1.6658 2.5124 43 1 3.6660 -1.2100 4.4961 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336725169.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:03 Heat of formation + Delta-G solvation = -105.411993 kcal Electronic energy + Delta-G solvation = -21640.401894 eV Core-core repulsion = 18425.430357 eV Total energy + Delta-G solvation = -3214.971538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.45454 -37.18420 -36.60156 -33.86169 -32.58910 -32.45890 -30.06526 -27.50663 -26.78926 -26.26052 -25.66435 -23.19838 -22.02826 -21.03289 -19.32391 -17.62864 -17.49878 -16.90029 -16.09687 -15.64792 -15.09826 -14.98232 -14.87024 -14.68692 -14.49404 -14.22708 -13.61259 -13.30142 -12.96947 -12.85565 -12.67679 -12.38875 -12.18249 -12.01707 -11.93451 -11.87840 -11.61012 -11.29578 -11.19962 -11.12796 -11.05617 -10.59056 -10.39458 -10.33743 -10.19168 -9.87085 -9.63978 -9.03804 -8.63902 -8.32129 -6.98700 -6.31417 -4.04146 2.98010 3.27007 3.42429 3.43981 3.51260 3.57994 4.06296 4.28564 4.61549 4.70119 4.75401 4.81449 4.90061 4.94189 4.99747 5.06532 5.08814 5.15511 5.21066 5.30266 5.36701 5.41689 5.48669 5.52870 5.59396 5.65844 5.70790 5.75374 5.82402 5.86228 5.93388 6.01046 6.18251 6.19569 6.33365 6.54700 6.83549 6.85968 7.13772 7.36405 7.92437 8.41217 9.14489 10.78101 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.003315 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.074036 B = 8444.503941 C = 8682.755217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.114 3.886 3 C -0.166 4.166 4 C 0.024 3.976 5 N -0.529 5.529 6 C 0.058 3.942 7 C -0.139 4.139 8 C -0.078 4.078 9 S -0.220 6.220 10 C -0.502 4.502 11 H 0.088 0.912 12 C 0.092 3.908 13 N -0.882 5.882 14 Si 0.862 3.138 15 H -0.269 1.269 16 H -0.239 1.239 17 H -0.275 1.275 18 C 0.020 3.980 19 C 0.094 3.906 20 H 0.074 0.926 21 C 0.084 3.916 22 O -0.566 6.566 23 O -0.365 6.365 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.271 0.729 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 15.515 18.045 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.075 3.925 3 C -0.224 4.224 4 C -0.105 4.105 5 N -0.252 5.252 6 C -0.071 4.071 7 C -0.179 4.179 8 C -0.227 4.227 9 S 0.008 5.992 10 C -0.650 4.650 11 H 0.106 0.894 12 C -0.116 4.116 13 N -0.518 5.518 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.163 1.163 17 H -0.200 1.200 18 C -0.109 4.109 19 C 0.036 3.964 20 H 0.092 0.908 21 C 0.006 3.994 22 O -0.371 6.371 23 O -0.284 6.284 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -4.115 15.648 18.246 24.387 hybrid contribution 0.626 -1.336 -0.599 1.592 sum -3.488 14.312 17.647 22.988 Atomic orbital electron populations 1.21743 0.92241 1.02967 1.02593 1.21562 0.94516 0.91837 0.84628 1.22265 1.02749 0.95484 1.01886 1.22867 0.88171 1.00558 0.98861 1.62479 1.09010 1.51615 1.02108 1.22297 0.99865 0.93006 0.91972 1.22006 1.01277 0.96452 0.98131 1.22963 1.02250 0.98368 0.99113 1.84176 1.62774 1.15304 1.36947 1.22113 1.30595 1.04622 1.07626 0.89401 1.24801 0.95445 0.97089 0.94310 1.69938 1.41984 1.20370 1.19542 0.86668 0.82590 0.81836 0.80233 1.19386 1.16253 1.20046 1.22722 1.01114 0.96912 0.90143 1.22074 0.82505 0.99436 0.92390 0.90778 1.22130 0.98119 0.94372 0.84827 1.86528 1.84700 1.49854 1.15969 1.88069 1.19932 1.77768 1.42680 0.91604 0.90939 0.91802 0.91146 0.91833 0.92455 0.89584 0.92951 0.90355 0.90186 0.91263 0.91549 0.91428 0.91332 0.91948 0.93001 0.89505 0.92713 0.92013 0.77482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.85 37.16 0.33 -0.98 16 2 C 0.11 1.25 1.11 -90.56 -0.10 1.15 16 3 C -0.17 -1.66 8.17 37.16 0.30 -1.35 16 4 C 0.02 0.27 3.83 -3.71 -0.01 0.26 16 5 N -0.53 -6.11 4.30 -234.31 -1.01 -7.12 16 6 C 0.06 0.71 5.38 -3.82 -0.02 0.69 16 7 C -0.14 -2.08 4.50 -26.73 -0.12 -2.20 16 8 C -0.08 -1.48 5.67 37.16 0.21 -1.27 16 9 S -0.22 -5.35 19.41 -107.50 -2.09 -7.44 16 10 C -0.50 -14.58 10.04 30.94 0.31 -14.26 16 11 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 12 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 13 N -0.88 -26.76 13.97 55.49 0.78 -25.99 16 14 Si 0.86 21.59 27.74 -169.99 -4.72 16.88 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.02 0.21 4.61 -3.71 -0.02 0.20 16 19 C 0.09 1.04 2.69 -26.68 -0.07 0.97 16 20 H 0.07 0.85 6.50 -51.93 -0.34 0.51 16 21 C 0.08 0.77 6.71 37.16 0.25 1.02 16 22 O -0.57 -5.52 13.63 -39.73 -0.54 -6.07 16 23 O -0.37 -4.68 9.89 -39.73 -0.39 -5.07 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.75 6.13 -51.93 -0.32 0.44 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.67 6.40 -51.93 -0.33 0.34 16 32 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 33 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.07 6.42 -51.93 -0.33 0.74 16 35 H 0.07 1.02 6.61 -51.93 -0.34 0.68 16 36 H 0.07 1.28 8.14 -51.91 -0.42 0.86 16 37 H 0.07 1.31 8.14 -51.92 -0.42 0.88 16 38 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.05 0.63 6.59 -51.93 -0.34 0.29 16 40 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.38 1.83 9.12 45.56 0.42 2.24 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -32.95 346.86 -8.44 -41.39 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.66 Total: 1.39 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 0.96 Total: -13.19 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.23 Total: -33.11 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.93 Total: -11.14 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.72 Total: 16.88 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.09 Total: -7.44 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.95 -8.44 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336725169.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.024 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds