Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52995 * 109.45995 * 59.99652 * 3 2 1 5 5 C 1.53043 * 109.45605 * 300.02297 * 3 2 1 6 6 C 1.53194 * 109.30750 * 178.59902 * 5 3 2 7 7 N 1.46924 * 108.76703 * 54.66216 * 6 5 3 8 8 S 1.65595 * 120.63656 * 126.35495 * 7 6 5 9 9 O 1.42109 * 104.27484 * 26.09594 * 8 7 6 10 10 O 1.42098 * 104.28166 * 153.95170 * 8 7 6 11 11 C 1.81400 * 104.45129 * 270.02523 * 8 7 6 12 12 C 1.53005 * 109.47144 * 179.97438 * 11 8 7 13 13 C 1.50698 * 109.47063 * 180.02562 * 12 11 8 14 14 H 1.08001 * 120.00165 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00123 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00108 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99743 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47353 * 89.99865 * 17 15 13 19 19 H 1.48497 * 109.47060 * 209.99996 * 17 15 13 20 20 H 1.48503 * 109.47279 * 330.00142 * 17 15 13 21 21 C 1.46932 * 118.73502 * 306.38092 * 7 6 5 22 22 C 1.53041 * 109.45802 * 179.97438 * 3 2 1 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 1.09005 * 109.47107 * 60.00247 * 4 3 2 29 29 H 1.09002 * 109.47048 * 180.02562 * 4 3 2 30 30 H 1.08995 * 109.47332 * 300.00143 * 4 3 2 31 31 H 1.08995 * 109.50148 * 298.56515 * 5 3 2 32 32 H 1.09002 * 109.49314 * 58.66815 * 5 3 2 33 33 H 1.08998 * 109.60476 * 294.86627 * 6 5 3 34 34 H 1.09002 * 109.58067 * 174.43565 * 6 5 3 35 35 H 1.08999 * 109.47235 * 299.99808 * 11 8 7 36 36 H 1.08994 * 109.47098 * 59.99832 * 11 8 7 37 37 H 1.08999 * 109.47099 * 300.00138 * 12 11 8 38 38 H 1.09000 * 109.47286 * 59.99663 * 12 11 8 39 39 H 0.97006 * 119.99561 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.58358 * 293.81819 * 21 7 6 41 41 H 1.08998 * 109.70217 * 173.46492 * 21 7 6 42 42 H 1.08996 * 109.50000 * 301.33184 * 22 3 2 43 43 H 1.09005 * 109.49898 * 61.40088 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5298 2.1636 1.2492 5 6 1.5292 2.1638 -1.2494 6 6 2.0127 3.6173 -1.2284 7 7 3.4745 3.6272 -1.0817 8 16 4.4248 4.4556 -2.1554 9 8 3.5778 5.4823 -2.6533 10 8 5.5980 4.7677 -1.4168 11 6 4.7949 3.2482 -3.4576 12 6 5.6774 3.9016 -4.5231 13 6 5.9843 2.8987 -5.6052 14 1 5.5897 1.8955 -5.5395 15 6 6.7697 3.2615 -6.6788 16 7 7.0379 2.3862 -7.6229 17 14 7.4528 4.9965 -6.7922 18 1 8.7771 5.0519 -6.1225 19 1 7.6037 5.3767 -8.2197 20 1 6.5206 5.9401 -6.1244 21 6 4.0773 2.8874 0.0356 22 6 3.5704 1.4422 0.0006 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8931 1.6496 2.1392 29 1 1.8927 3.1914 1.2492 30 1 0.4398 2.1634 1.2492 31 1 1.9128 1.6655 -2.1396 32 1 0.4394 2.1433 -1.2613 33 1 1.5575 4.1420 -0.3884 34 1 1.7358 4.1079 -2.1616 35 1 5.3182 2.3957 -3.0247 36 1 3.8648 2.9099 -3.9143 37 1 5.1537 4.7539 -4.9560 38 1 6.6075 4.2403 -4.0667 39 1 7.5908 2.6415 -8.3780 40 1 3.7905 3.3526 0.9788 41 1 5.1629 2.8963 -0.0610 42 1 3.9338 0.9080 0.8785 43 1 3.9345 0.9501 -0.9013 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348116613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -94.828797 kcal Electronic energy + Delta-G solvation = -22481.661920 eV Core-core repulsion = 19267.149304 eV Total energy + Delta-G solvation = -3214.512616 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.78094 -36.76905 -35.59841 -35.12951 -33.93437 -31.47139 -31.34690 -30.42686 -27.60589 -25.98362 -25.01278 -23.43902 -21.86407 -21.05120 -19.17656 -18.14696 -17.52691 -16.87429 -15.99643 -15.61486 -15.19791 -15.01907 -14.67751 -14.46118 -14.24878 -14.22275 -13.59112 -13.48600 -12.86969 -12.75614 -12.35129 -12.26892 -12.06629 -11.93831 -11.89143 -11.69240 -11.53011 -11.48283 -11.26866 -11.23618 -11.17775 -10.92508 -10.74424 -10.44952 -10.36711 -10.29836 -10.11499 -9.68878 -9.39797 -8.76483 -8.66119 -6.16457 -4.17527 0.66462 2.93130 3.26667 3.33991 3.38428 4.21079 4.36087 4.41886 4.50376 4.53601 4.58514 4.82544 5.05178 5.10839 5.15558 5.17306 5.26253 5.34403 5.35843 5.44006 5.46451 5.53700 5.55807 5.64552 5.67550 5.74311 5.79531 5.84859 5.88528 5.94667 5.98923 6.06223 6.19789 6.24151 6.29328 6.38329 6.66509 6.82802 6.95084 7.55269 8.36987 8.84737 9.43443 10.95979 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.004542 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.986705 B = 6163.656717 C = 6768.526484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.058 4.058 4 C -0.148 4.148 5 C -0.129 4.129 6 C 0.121 3.879 7 N -1.003 6.003 8 S 2.588 3.412 9 O -0.965 6.965 10 O -0.965 6.965 11 C -0.582 4.582 12 C -0.007 4.007 13 C -0.518 4.518 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.896 5.896 17 Si 0.869 3.131 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C 0.121 3.879 22 C -0.127 4.127 23 H 0.050 0.950 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.032 0.968 38 H 0.027 0.973 39 H 0.266 0.734 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.472 -3.127 17.786 21.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C -0.058 4.058 4 C -0.205 4.205 5 C -0.168 4.168 6 C -0.005 4.005 7 N -0.839 5.839 8 S 2.686 3.314 9 O -0.955 6.955 10 O -0.956 6.956 11 C -0.715 4.715 12 C -0.046 4.046 13 C -0.557 4.557 14 H 0.095 0.905 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.695 3.305 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.186 1.186 21 C -0.004 4.004 22 C -0.166 4.166 23 H 0.069 0.931 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.131 -2.213 17.750 21.613 hybrid contribution 0.348 0.036 -0.470 0.586 sum -11.783 -2.177 17.281 21.029 Atomic orbital electron populations 1.21891 0.96042 1.01345 1.02041 1.21573 0.95859 0.95722 1.01966 1.20479 0.94915 0.95030 0.95377 1.22036 1.00998 1.00740 0.96764 1.22090 1.00926 0.95659 0.98139 1.21415 0.79276 0.96818 1.02958 1.57876 1.15878 1.68794 1.41401 1.05726 0.73591 0.76477 0.75557 1.93538 1.66696 1.53962 1.81319 1.93535 1.49078 1.83112 1.69826 1.30347 1.10364 1.15875 1.14951 1.19407 0.93974 0.97473 0.93779 1.20848 1.32344 0.98504 1.04044 0.90454 1.24982 0.95515 0.97299 0.95287 1.69883 1.37990 1.34612 1.10922 0.86932 0.80352 0.85363 0.77850 1.19661 1.20739 1.18626 1.21393 0.98229 0.91277 0.89533 1.22023 0.95076 0.96709 1.02829 0.93139 0.92324 0.92554 0.92127 0.91854 0.92848 0.92010 0.92449 0.91068 0.90559 0.91215 0.89190 0.85800 0.85776 0.95022 0.95473 0.92391 0.91219 0.89166 0.90899 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.21 37.16 0.34 -0.76 16 2 C -0.11 -0.89 4.99 -26.73 -0.13 -1.02 16 3 C -0.06 -0.49 0.54 -154.46 -0.08 -0.57 16 4 C -0.15 -1.14 7.36 37.16 0.27 -0.87 16 5 C -0.13 -1.21 4.59 -26.61 -0.12 -1.33 16 6 C 0.12 1.34 5.85 -3.71 -0.02 1.32 16 7 N -1.00 -13.10 3.22 -113.52 -0.37 -13.46 16 8 S 2.59 44.85 5.41 -107.50 -0.58 44.27 16 9 O -0.96 -19.10 16.73 -57.54 -0.96 -20.06 16 10 O -0.97 -19.06 16.73 -57.54 -0.96 -20.02 16 11 C -0.58 -10.78 6.12 37.16 0.23 -10.55 16 12 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 13 C -0.52 -14.53 9.66 -34.44 -0.33 -14.87 16 14 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 16 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 17 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 21 C 0.12 1.35 5.84 -3.71 -0.02 1.32 16 22 C -0.13 -1.19 4.91 -26.61 -0.13 -1.32 16 23 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.42 6.40 -51.93 -0.33 0.09 16 25 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.51 4.98 -51.93 -0.26 0.26 16 30 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.61 6.36 -51.93 -0.33 0.28 16 33 H 0.07 0.69 6.69 -51.93 -0.35 0.35 16 34 H 0.09 1.06 7.10 -51.93 -0.37 0.69 16 35 H 0.12 2.09 8.14 -51.92 -0.42 1.67 16 36 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 37 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 38 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.07 0.69 6.69 -51.93 -0.35 0.34 16 41 H 0.09 1.06 7.10 -51.93 -0.37 0.69 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -33.51 335.37 -9.11 -42.62 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.18 Total: -2.00 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -0.21 Total: -26.95 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.41 Total: -39.84 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.92 Total: -40.08 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 44.85 SS G_CDS: -0.58 Total: 44.27 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.51 -9.11 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348116613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.213 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds