Wall clock time and date at job start Tue Mar 31 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.30999 * 119.99940 * 2 1 4 4 C 1.50705 * 119.99815 * 359.97438 * 3 2 1 5 5 C 1.52998 * 109.47158 * 125.00392 * 4 3 2 6 6 H 1.08996 * 109.47211 * 304.99746 * 5 4 3 7 7 C 1.52999 * 109.47052 * 184.99584 * 5 4 3 8 8 O 1.42891 * 109.47635 * 305.00012 * 7 5 4 9 9 N 1.46496 * 109.47382 * 64.99706 * 5 4 3 10 10 C 1.34774 * 120.00159 * 204.99718 * 9 5 4 11 11 O 1.21590 * 120.00086 * 0.02562 * 10 9 5 12 12 C 1.47646 * 120.00138 * 180.02562 * 10 9 5 13 13 C 1.40011 * 119.89309 * 359.72373 * 12 10 9 14 14 C 1.36319 * 120.10514 * 179.75946 * 13 12 10 15 15 C 1.40887 * 119.89128 * 0.51774 * 14 13 12 16 16 C 1.41109 * 120.10686 * 179.71485 * 15 14 13 17 17 H 1.08000 * 120.00480 * 204.65388 * 16 15 14 18 18 C 1.40229 * 119.99681 * 24.65812 * 16 15 14 19 19 N 1.30647 * 120.00092 * 17.86313 * 18 16 15 20 20 Si 1.86800 * 119.99988 * 197.86524 * 18 16 15 21 21 H 1.48503 * 109.47076 * 89.99484 * 20 18 16 22 22 H 1.48499 * 109.47118 * 209.99641 * 20 18 16 23 23 H 1.48499 * 109.46978 * 329.99660 * 20 18 16 24 24 C 1.40897 * 119.79416 * 359.74178 * 15 14 13 25 25 C 1.36320 * 119.88721 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.47447 * 300.00176 * 1 2 3 27 27 H 1.09002 * 109.47216 * 60.00762 * 1 2 3 28 28 H 1.09006 * 109.46836 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.00265 * 179.97438 * 2 1 3 30 30 H 1.07996 * 120.00520 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47317 * 4.99651 * 4 3 2 32 32 H 1.09007 * 109.46624 * 245.00076 * 4 3 2 33 33 H 1.08997 * 109.47020 * 184.99407 * 7 5 4 34 34 H 1.09004 * 109.46767 * 65.00005 * 7 5 4 35 35 H 0.96698 * 114.00330 * 179.97438 * 8 7 5 36 36 H 0.96998 * 119.99963 * 25.00240 * 9 5 4 37 37 H 1.07995 * 119.95027 * 0.02655 * 13 12 10 38 38 H 1.08000 * 120.05960 * 180.23533 * 14 13 12 39 39 H 0.96994 * 120.00185 * 180.02562 * 19 18 16 40 40 H 1.07998 * 120.05356 * 179.97438 * 24 15 14 41 41 H 1.07997 * 119.94151 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1619 1.1345 0.0000 4 6 1.4083 2.4396 -0.0006 5 6 1.8694 3.2953 1.1810 6 1 1.7570 2.7290 2.1054 7 6 1.0187 4.5649 1.2539 8 8 1.0738 5.2479 0.0000 9 7 3.2766 3.6602 0.9999 10 6 4.0396 3.9548 2.0712 11 8 3.5601 3.9174 3.1879 12 6 5.4577 4.3231 1.8887 13 6 6.0091 4.3600 0.6022 14 6 7.3166 4.7042 0.4283 15 6 8.1161 5.0126 1.5466 16 6 9.4717 5.3637 1.3723 17 1 10.1759 5.2150 2.1776 18 6 9.9044 5.9056 0.1536 19 7 9.0358 6.4084 -0.6829 20 14 11.7228 5.9088 -0.2740 21 1 12.0641 4.6560 -0.9946 22 1 12.0256 7.0763 -1.1403 23 1 12.5244 5.9965 0.9730 24 6 7.5582 4.9689 2.8397 25 6 6.2481 4.6291 3.0030 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 2.0470 -0.9353 0.0004 30 1 3.2419 1.1346 0.0004 31 1 0.3401 2.2424 0.0885 32 1 1.6032 2.9712 -0.9321 33 1 1.4035 5.2154 2.0392 34 1 -0.0142 4.2977 1.4770 35 1 0.5556 6.0639 -0.0265 36 1 3.6592 3.6898 0.1091 37 1 5.3965 4.1195 -0.2540 38 1 7.7401 4.7361 -0.5646 39 1 9.3351 6.7829 -1.5261 40 1 8.1673 5.2041 3.6998 41 1 5.8196 4.5949 3.9938 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354181789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:10 Heat of formation + Delta-G solvation = -68.812476 kcal Electronic energy + Delta-G solvation = -22321.365334 eV Core-core repulsion = 18972.536919 eV Total energy + Delta-G solvation = -3348.828415 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.41061 -37.68398 -36.72755 -35.95479 -33.84892 -33.82536 -30.91458 -29.53837 -29.36111 -27.76031 -25.80420 -25.31950 -22.41207 -21.10734 -20.60648 -19.60937 -18.53760 -17.50670 -17.36803 -16.77640 -15.77996 -15.46489 -15.36725 -14.74944 -14.35117 -13.98709 -13.67796 -13.49559 -13.39340 -13.20687 -13.08912 -12.72909 -12.15515 -12.09519 -11.92116 -11.88716 -11.41640 -11.30643 -11.29389 -11.27306 -10.94328 -10.73409 -10.62100 -10.05120 -9.98394 -9.53759 -9.33625 -8.98917 -8.91728 -8.51663 -7.69501 -7.52044 -7.01621 -4.58443 2.21531 2.25920 2.92919 2.96810 2.99115 3.05996 3.75240 3.81779 3.88456 4.36467 4.59114 4.76479 5.03229 5.08365 5.19242 5.35407 5.37937 5.48898 5.52565 5.60280 5.65851 5.79669 5.87868 5.97104 6.09538 6.12583 6.26542 6.34006 6.65724 6.79073 6.82637 6.84754 6.99686 7.10967 7.16068 7.45887 7.64179 7.68800 7.82527 7.88328 8.09281 8.31120 8.42200 8.65148 8.77610 9.12121 9.90411 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021142 B = 0.003419 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.074515 B = 8186.731672 C = 8445.270626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.174 4.174 3 C -0.150 4.150 4 C -0.099 4.099 5 C 0.157 3.843 6 H 0.095 0.905 7 C 0.063 3.937 8 O -0.567 6.567 9 N -0.727 5.727 10 C 0.572 3.428 11 O -0.580 6.580 12 C -0.283 4.283 13 C -0.061 4.061 14 C -0.178 4.178 15 C 0.129 3.871 16 C -0.444 4.444 17 H 0.085 0.915 18 C 0.074 3.926 19 N -0.772 5.772 20 Si 0.914 3.086 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.240 4.240 25 C -0.023 4.023 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.375 0.625 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.286 0.714 40 H 0.097 0.903 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.997 -5.396 -3.272 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.192 4.192 3 C -0.168 4.168 4 C -0.136 4.136 5 C 0.052 3.948 6 H 0.113 0.887 7 C -0.016 4.016 8 O -0.372 6.372 9 N -0.379 5.379 10 C 0.367 3.633 11 O -0.463 6.463 12 C -0.288 4.288 13 C -0.080 4.080 14 C -0.198 4.198 15 C 0.126 3.874 16 C -0.472 4.472 17 H 0.103 0.897 18 C -0.147 4.147 19 N -0.395 5.395 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.259 4.259 25 C -0.042 4.042 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.221 0.779 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.983 -5.802 -2.868 13.619 hybrid contribution 0.639 0.618 -0.561 1.051 sum -11.344 -5.184 -3.429 12.935 Atomic orbital electron populations 1.20845 0.93630 1.01819 1.01747 1.22750 0.96038 0.97859 1.02590 1.22881 1.00103 0.94063 0.99792 1.20974 0.99828 0.93687 0.99134 1.20832 0.81824 0.92923 0.99250 0.88701 1.22694 0.98169 0.94704 0.86055 1.86475 1.74833 1.41269 1.34590 1.45862 1.09742 1.72124 1.10204 1.18604 0.86558 0.74768 0.83349 1.90617 1.75308 1.55692 1.24702 1.18906 0.92437 1.22892 0.94533 1.20486 0.95562 0.97936 0.94066 1.20975 0.93532 1.05740 0.99526 1.17786 0.92806 0.85792 0.91060 1.19851 0.94547 1.34271 0.98489 0.89738 1.26097 1.00690 0.92473 0.95431 1.69746 1.36929 1.24349 1.08454 0.86210 0.81592 0.78869 0.79598 1.18943 1.20037 1.18306 1.20715 0.94905 1.13382 0.96906 1.20355 0.93364 0.94046 0.96412 0.91749 0.91830 0.92498 0.87536 0.87043 0.90125 0.89677 0.92849 0.93515 0.77914 0.76529 0.89301 0.86230 0.90249 0.88444 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.65 36.00 0.31 -0.77 16 2 C -0.17 -1.87 10.26 -36.03 -0.37 -2.24 16 3 C -0.15 -1.82 9.25 -36.02 -0.33 -2.16 16 4 C -0.10 -1.16 4.72 -27.88 -0.13 -1.29 16 5 C 0.16 2.25 2.36 -67.93 -0.16 2.09 16 6 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 7 C 0.06 0.82 6.85 37.16 0.25 1.07 16 8 O -0.57 -7.05 12.83 -35.23 -0.45 -7.50 16 9 N -0.73 -12.46 4.67 -54.82 -0.26 -12.72 16 10 C 0.57 12.25 7.73 -12.42 -0.10 12.15 16 11 O -0.58 -13.71 15.98 5.29 0.08 -13.62 16 12 C -0.28 -6.56 5.89 -104.73 -0.62 -7.18 16 13 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 14 C -0.18 -4.43 8.64 -39.27 -0.34 -4.77 16 15 C 0.13 3.31 5.58 -106.80 -0.60 2.72 16 16 C -0.44 -11.14 9.04 -37.75 -0.34 -11.48 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 19 N -0.77 -18.65 10.95 55.56 0.61 -18.04 16 20 Si 0.91 17.41 29.60 -169.99 -5.03 12.38 16 21 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 24 C -0.24 -5.87 9.73 -39.27 -0.38 -6.25 16 25 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 26 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 27 H 0.06 0.52 7.85 -51.93 -0.41 0.11 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.11 1.48 8.03 -52.49 -0.42 1.06 16 31 H 0.08 0.81 5.79 -51.93 -0.30 0.51 16 32 H 0.08 1.04 7.73 -51.92 -0.40 0.64 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.37 3.06 9.12 45.56 0.42 3.47 16 36 H 0.40 6.50 6.60 -40.82 -0.27 6.23 16 37 H 0.09 1.74 6.37 -52.49 -0.33 1.40 16 38 H 0.12 3.01 6.16 -52.49 -0.32 2.68 16 39 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 40 H 0.10 2.23 8.06 -52.49 -0.42 1.80 16 41 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -29.20 345.44 -8.38 -37.58 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -4.90 Total: 15.85 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -3.64 Total: -19.12 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.35 Total: -30.76 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.37 Total: -21.13 kcal Atomic # 14 Polarization: 17.41 SS G_CDS: -5.03 Total: 12.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.20 -8.38 -37.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354181789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.229 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds