Wall clock time and date at job start Tue Mar 31 2020 07:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.30999 * 120.00119 * 2 1 4 4 C 1.50700 * 119.99968 * 359.97438 * 3 2 1 5 5 C 1.53000 * 109.46785 * 125.00409 * 4 3 2 6 6 H 1.08994 * 109.47374 * 54.99658 * 5 4 3 7 7 C 1.53001 * 109.46963 * 175.00075 * 5 4 3 8 8 O 1.42905 * 109.47060 * 54.99836 * 7 5 4 9 9 N 1.46500 * 109.46912 * 294.99916 * 5 4 3 10 10 C 1.34780 * 120.00227 * 155.00564 * 9 5 4 11 11 O 1.21592 * 119.99705 * 359.97438 * 10 9 5 12 12 C 1.47642 * 120.00140 * 180.02562 * 10 9 5 13 13 C 1.40014 * 119.89289 * 179.97438 * 12 10 9 14 14 C 1.36314 * 120.10542 * 180.27327 * 13 12 10 15 15 C 1.40892 * 119.89099 * 359.50150 * 14 13 12 16 16 C 1.41107 * 120.10345 * 180.22549 * 15 14 13 17 17 H 1.07997 * 120.00225 * 205.24410 * 16 15 14 18 18 C 1.40226 * 119.99908 * 25.24987 * 16 15 14 19 19 N 1.30649 * 120.00094 * 17.90569 * 18 16 15 20 20 Si 1.86800 * 119.99925 * 197.90839 * 18 16 15 21 21 H 1.48509 * 109.47112 * 94.52575 * 20 18 16 22 22 H 1.48494 * 109.47261 * 214.52265 * 20 18 16 23 23 H 1.48498 * 109.47411 * 334.52525 * 20 18 16 24 24 C 1.40890 * 119.79342 * 0.50234 * 15 14 13 25 25 C 1.36319 * 119.89196 * 359.74472 * 24 15 14 26 26 H 1.09005 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46955 * 300.00240 * 1 2 3 28 28 H 1.08994 * 109.46920 * 59.99669 * 1 2 3 29 29 H 1.08003 * 120.00122 * 180.02562 * 2 1 3 30 30 H 1.07998 * 119.99771 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46874 * 5.00213 * 4 3 2 32 32 H 1.09000 * 109.46790 * 245.00044 * 4 3 2 33 33 H 1.09007 * 109.46990 * 174.99531 * 7 5 4 34 34 H 1.08997 * 109.47487 * 294.99655 * 7 5 4 35 35 H 0.96703 * 114.00107 * 180.02562 * 8 7 5 36 36 H 0.97005 * 120.00362 * 334.99902 * 9 5 4 37 37 H 1.07995 * 119.94885 * 0.02562 * 13 12 10 38 38 H 1.08001 * 120.05928 * 179.74637 * 14 13 12 39 39 H 0.96994 * 119.99882 * 180.02562 * 19 18 16 40 40 H 1.07995 * 120.05447 * 179.73521 * 24 15 14 41 41 H 1.07993 * 119.94874 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1620 1.1345 0.0000 4 6 1.4085 2.4396 -0.0006 5 6 1.8698 3.2952 1.1810 6 1 2.9520 3.4181 1.1401 7 6 1.1975 4.6677 1.1099 8 8 -0.2204 4.5010 1.0462 9 7 1.5004 2.6349 2.4355 10 6 2.1956 2.8903 3.5616 11 8 3.1296 3.6684 3.5361 12 6 1.8237 2.2245 4.8258 13 6 2.5477 2.4911 5.9942 14 6 2.2116 1.8745 7.1625 15 6 1.1271 0.9758 7.1954 16 6 0.7723 0.3387 8.4035 17 1 0.2541 -0.6086 8.3825 18 6 1.0925 0.9356 9.6313 19 7 1.3911 2.2065 9.6816 20 14 1.0923 -0.0864 11.1949 21 1 2.4678 -0.5763 11.4663 22 1 0.6312 0.7493 12.3324 23 1 0.1781 -1.2448 11.0291 24 6 0.4016 0.7107 6.0172 25 6 0.7483 1.3282 4.8524 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 2.0470 -0.9353 -0.0004 30 1 3.2420 1.1344 -0.0004 31 1 0.3403 2.2424 0.0887 32 1 1.6034 2.9711 -0.9320 33 1 1.4559 5.2453 1.9975 34 1 1.5416 5.1952 0.2203 35 1 -0.7124 5.3321 0.9986 36 1 0.7554 2.0140 2.4559 37 1 3.3764 3.1832 5.9688 38 1 2.7732 2.0776 8.0624 39 1 1.6129 2.6193 10.5308 40 1 -0.4278 0.0192 6.0367 41 1 0.1931 1.1254 3.9486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354181790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:14 Heat of formation + Delta-G solvation = -68.636050 kcal Electronic energy + Delta-G solvation = -22540.022005 eV Core-core repulsion = 19191.201241 eV Total energy + Delta-G solvation = -3348.820765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.41179 -37.67808 -36.71205 -35.93629 -33.85862 -33.68688 -30.87075 -29.86365 -29.18899 -27.61758 -25.78550 -25.31227 -22.37403 -21.24503 -20.43806 -19.64412 -18.53324 -17.53230 -17.29582 -16.76955 -16.11131 -15.32447 -15.05285 -14.70475 -14.40639 -13.97094 -13.59730 -13.51849 -13.44011 -13.16956 -12.84038 -12.62259 -12.33388 -12.17397 -11.95787 -11.83396 -11.70279 -11.34159 -11.23664 -10.97832 -10.91001 -10.67560 -10.58006 -10.01919 -9.97562 -9.50132 -9.31495 -9.02412 -8.85930 -8.51722 -7.66085 -7.52506 -6.99123 -4.56940 2.25426 2.27822 2.93682 2.97984 3.00818 3.06853 3.76859 3.82167 3.90459 4.35700 4.61084 4.76313 5.03307 5.13446 5.25620 5.37283 5.43304 5.50628 5.61726 5.63966 5.71011 5.82488 5.86747 5.97514 6.04121 6.14270 6.28776 6.33697 6.69129 6.83783 6.84818 6.87748 7.05105 7.10554 7.15174 7.47599 7.62842 7.66001 7.83189 7.91800 8.09234 8.33067 8.46519 8.66463 8.79090 9.13516 9.93296 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.003640 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.992901 B = 7690.521612 C = 8279.160721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.100 4.100 5 C 0.157 3.843 6 H 0.095 0.905 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.725 5.725 10 C 0.572 3.428 11 O -0.579 6.579 12 C -0.281 4.281 13 C -0.036 4.036 14 C -0.182 4.182 15 C 0.129 3.871 16 C -0.445 4.445 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.771 5.771 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.235 4.235 25 C -0.047 4.047 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.374 0.626 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.286 0.714 40 H 0.096 0.904 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 0.067 -13.652 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.182 4.182 3 C -0.174 4.174 4 C -0.137 4.137 5 C 0.051 3.949 6 H 0.113 0.887 7 C -0.016 4.016 8 O -0.372 6.372 9 N -0.377 5.377 10 C 0.367 3.633 11 O -0.461 6.461 12 C -0.286 4.286 13 C -0.056 4.056 14 C -0.202 4.202 15 C 0.126 3.874 16 C -0.473 4.473 17 H 0.102 0.898 18 C -0.147 4.147 19 N -0.394 5.394 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.255 4.255 25 C -0.066 4.066 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.221 0.779 36 H 0.233 0.767 37 H 0.117 0.883 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.416 0.182 -13.485 13.561 hybrid contribution -0.442 0.005 0.748 0.868 sum -1.858 0.188 -12.738 12.874 Atomic orbital electron populations 1.20866 0.93398 1.01991 1.01914 1.22769 0.96226 0.97789 1.01397 1.22768 0.99514 0.94224 1.00923 1.20975 1.01201 0.94093 0.97436 1.20827 0.99420 0.90273 0.84396 0.88714 1.22707 0.81193 0.97805 0.99934 1.86468 1.18078 1.35238 1.97461 1.45827 1.36043 1.48004 1.07852 1.18608 0.80790 0.80318 0.83612 1.90621 1.30843 1.38331 1.86354 1.18920 1.06214 1.10557 0.92890 1.20473 0.96819 0.96490 0.91804 1.20990 0.99567 1.02798 0.96817 1.17780 0.88576 0.89003 0.92068 1.19837 1.31486 1.05933 0.90056 0.89764 1.26093 0.92204 0.94704 1.01687 1.69755 1.30000 1.10684 1.28922 0.86211 0.79862 0.80579 0.79681 1.19006 1.20007 1.18278 1.20667 1.03292 1.07613 0.93885 1.20360 0.94773 0.95101 0.96355 0.92363 0.91463 0.91876 0.87563 0.87540 0.89566 0.90234 0.92835 0.93457 0.77934 0.76731 0.88255 0.86304 0.90228 0.88543 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.65 36.01 0.31 -0.95 16 2 C -0.16 -1.84 10.26 -36.03 -0.37 -2.21 16 3 C -0.16 -1.84 9.25 -36.03 -0.33 -2.17 16 4 C -0.10 -1.14 4.72 -27.88 -0.13 -1.27 16 5 C 0.16 2.21 2.36 -67.93 -0.16 2.05 16 6 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 7 C 0.06 0.80 6.85 37.16 0.25 1.06 16 8 O -0.57 -6.86 12.83 -35.23 -0.45 -7.31 16 9 N -0.73 -12.35 4.69 -54.81 -0.26 -12.60 16 10 C 0.57 12.32 7.73 -12.42 -0.10 12.23 16 11 O -0.58 -13.84 15.99 5.28 0.08 -13.76 16 12 C -0.28 -6.57 5.89 -104.73 -0.62 -7.18 16 13 C -0.04 -0.91 9.52 -39.61 -0.38 -1.29 16 14 C -0.18 -4.73 8.63 -39.27 -0.34 -5.07 16 15 C 0.13 3.33 5.57 -106.80 -0.59 2.74 16 16 C -0.45 -11.22 9.04 -37.75 -0.34 -11.56 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.77 5.13 -17.31 -0.09 1.69 16 19 N -0.77 -19.08 11.00 55.56 0.61 -18.47 16 20 Si 0.91 17.60 29.60 -169.99 -5.03 12.57 16 21 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 22 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.24 -5.55 9.73 -39.27 -0.38 -5.93 16 25 C -0.05 -1.03 9.47 -39.61 -0.38 -1.40 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 28 H 0.06 0.58 7.85 -51.93 -0.41 0.17 16 29 H 0.11 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 31 H 0.09 1.01 5.38 -51.93 -0.28 0.73 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.37 2.95 9.12 45.56 0.42 3.36 16 36 H 0.40 6.40 6.60 -40.82 -0.27 6.13 16 37 H 0.10 2.44 7.63 -52.49 -0.40 2.04 16 38 H 0.12 3.15 6.20 -52.49 -0.33 2.82 16 39 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 40 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 41 H 0.09 1.64 6.37 -52.49 -0.33 1.30 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -29.56 345.55 -8.38 -37.93 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -4.90 Total: 15.71 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -3.64 Total: -19.28 kcal Atomic # 7 Polarization: -31.42 SS G_CDS: 0.35 Total: -31.07 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.37 Total: -21.07 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.56 -8.38 -37.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354181790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.702 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds