Wall clock time and date at job start Tue Mar 31 2020 07:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47634 * 2 1 4 4 C 1.52999 * 109.47032 * 120.00527 * 2 1 3 5 5 C 1.53002 * 109.47402 * 174.99866 * 4 2 1 6 6 S 1.81397 * 109.47293 * 179.97438 * 5 4 2 7 7 O 1.42105 * 110.54189 * 68.37430 * 6 5 4 8 8 O 1.42099 * 110.54203 * 291.62169 * 6 5 4 9 9 N 1.65608 * 104.44917 * 179.97438 * 6 5 4 10 10 C 1.46494 * 119.99583 * 90.00089 * 9 6 5 11 11 C 1.50703 * 109.47225 * 95.00259 * 10 9 6 12 12 H 1.07996 * 120.00066 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99842 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99597 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00371 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47175 * 89.99893 * 15 13 11 17 17 H 1.48496 * 109.47237 * 209.99970 * 15 13 11 18 18 H 1.48502 * 109.46952 * 330.00114 * 15 13 11 19 19 C 1.46493 * 119.99916 * 269.72772 * 9 6 5 20 20 C 1.52997 * 109.47398 * 95.00006 * 19 9 6 21 21 C 1.53005 * 117.49989 * 243.61967 * 20 19 9 22 22 C 1.52997 * 60.00061 * 252.50806 * 21 20 19 23 23 H 1.09002 * 109.46602 * 300.00192 * 1 2 3 24 24 H 1.09003 * 109.46827 * 59.99610 * 1 2 3 25 25 H 1.08993 * 109.47095 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47077 * 239.99827 * 2 1 3 27 27 H 1.09006 * 109.47030 * 59.99798 * 3 2 1 28 28 H 1.08995 * 109.47449 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47332 * 300.00081 * 3 2 1 30 30 H 1.09001 * 109.47713 * 54.99398 * 4 2 1 31 31 H 1.09001 * 109.46817 * 294.99621 * 4 2 1 32 32 H 1.09001 * 109.47069 * 59.99138 * 5 4 2 33 33 H 1.09001 * 109.46935 * 299.99683 * 5 4 2 34 34 H 1.09005 * 109.47101 * 215.00381 * 10 9 6 35 35 H 1.09001 * 109.47746 * 334.99625 * 10 9 6 36 36 H 0.97008 * 119.99656 * 179.97438 * 14 13 11 37 37 H 1.09004 * 109.46868 * 214.99641 * 19 9 6 38 38 H 1.09004 * 109.47439 * 334.99764 * 19 9 6 39 39 H 1.08997 * 115.54840 * 29.32534 * 20 19 9 40 40 H 1.09002 * 117.49693 * 0.02562 * 21 20 19 41 41 H 1.09000 * 117.49634 * 145.01940 * 21 20 19 42 42 H 1.09001 * 117.50089 * 252.51283 * 22 21 20 43 43 H 1.09003 * 117.50184 * 107.48619 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.8312 1.1880 6 16 4.1695 -1.6858 2.6694 7 8 3.7734 -3.0505 2.6544 8 8 3.9769 -0.8797 3.8236 9 7 5.8134 -1.7361 2.4753 10 6 6.6452 -0.6451 2.9890 11 6 7.1570 -1.0061 4.3597 12 1 6.8891 -1.9533 4.8040 13 6 7.9674 -0.1271 5.0466 14 7 8.4136 -0.4420 6.2429 15 14 8.4314 1.5109 4.2779 16 1 7.4239 2.5361 4.6514 17 1 9.7684 1.9282 4.7712 18 1 8.4705 1.3708 2.8000 19 6 6.4362 -2.8745 1.7954 20 6 6.6386 -2.5370 0.3169 21 6 5.8754 -3.3758 -0.7102 22 6 7.3855 -3.5571 -0.5448 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6053 -1.7199 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.9995 0.1673 1.1420 33 1 3.8532 -1.3942 0.3002 34 1 7.4883 -0.4837 2.3172 35 1 6.0510 0.2665 3.0515 36 1 8.9840 0.1763 6.7260 37 1 7.4013 -3.0883 2.2547 38 1 5.7903 -3.7481 1.8835 39 1 6.7902 -1.4813 0.0922 40 1 5.2287 -4.1678 -0.3325 41 1 5.5246 -2.8719 -1.6108 42 1 8.0283 -3.1724 -1.3366 43 1 7.7328 -4.4686 -0.0583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355414529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:56 Heat of formation + Delta-G solvation = -63.428664 kcal Electronic energy + Delta-G solvation = -22370.275783 eV Core-core repulsion = 19157.124779 eV Total energy + Delta-G solvation = -3213.151004 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -37.76032 -37.04782 -36.50834 -35.34976 -34.88483 -32.30331 -30.96847 -28.37856 -27.34039 -25.64029 -24.06747 -22.35273 -22.01389 -20.43024 -20.06486 -18.22807 -17.14549 -16.92674 -15.99021 -15.90942 -15.53506 -14.89842 -14.46472 -14.24906 -14.08983 -13.98784 -13.56341 -13.14665 -12.52658 -12.48698 -12.41460 -12.10158 -11.98586 -11.75376 -11.63074 -11.49306 -11.44151 -11.36838 -11.36144 -11.20892 -10.90309 -10.78025 -10.71822 -10.56036 -10.38524 -10.15536 -10.04341 -9.68322 -9.49574 -8.56721 -8.09114 -6.05190 -4.03614 0.78710 3.22128 3.29024 3.32353 3.36590 3.91118 4.31109 4.39992 4.50390 4.60235 4.71927 4.75389 4.89069 5.03652 5.06938 5.12148 5.22386 5.26189 5.44876 5.46560 5.50679 5.55681 5.61301 5.68110 5.69530 5.71444 5.80235 5.86611 5.95341 5.97428 6.04958 6.15964 6.18533 6.19678 6.45127 6.50530 6.71863 7.08254 7.38283 7.60694 8.52518 9.01264 9.53867 11.08603 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.006205 C = 0.005153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.363176 B = 4511.072056 C = 5432.056390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.154 4.154 4 C -0.106 4.106 5 C -0.642 4.642 6 S 2.603 3.397 7 O -0.970 6.970 8 O -0.936 6.936 9 N -0.976 5.976 10 C 0.226 3.774 11 C -0.526 4.526 12 H 0.078 0.922 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.870 3.130 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.150 3.850 20 C -0.174 4.174 21 C -0.192 4.192 22 C -0.173 4.173 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.129 0.871 33 H 0.128 0.872 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.264 0.736 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 -0.392 -16.913 19.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C -0.211 4.211 4 C -0.145 4.145 5 C -0.769 4.769 6 S 2.694 3.306 7 O -0.961 6.961 8 O -0.926 6.926 9 N -0.812 5.812 10 C 0.103 3.897 11 C -0.565 4.565 12 H 0.097 0.903 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.696 3.304 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.190 1.190 19 C 0.024 3.976 20 C -0.194 4.194 21 C -0.229 4.229 22 C -0.210 4.210 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.207 -0.650 -16.013 19.000 hybrid contribution 0.606 1.340 -0.983 1.769 sum -9.600 0.691 -16.996 19.532 Atomic orbital electron populations 1.21882 0.95078 1.01922 1.01941 1.21043 0.95582 0.96460 0.97618 1.21935 1.01520 0.95770 1.01853 1.21374 0.91069 1.02027 1.00061 1.30876 1.06023 1.15654 1.24365 1.05222 0.73811 0.75020 0.76500 1.93509 1.82360 1.32702 1.87492 1.93638 1.84536 1.71234 1.43241 1.57170 1.23316 1.30162 1.70592 1.19449 0.90585 0.84177 0.95533 1.21356 1.29815 1.05816 0.99515 0.90343 1.24859 0.95585 0.97869 0.94656 1.69898 1.34672 1.36660 1.12207 0.86961 0.78340 0.85013 0.80049 1.19861 1.20995 1.18973 1.20824 1.00793 0.88136 0.87896 1.23066 1.04800 0.97733 0.93829 1.23138 0.94993 1.03624 1.01151 1.22868 0.94249 1.01278 1.02631 0.92417 0.92596 0.92500 0.90938 0.92341 0.92245 0.92735 0.90579 0.90434 0.85229 0.85339 0.94804 0.95397 0.92589 0.88847 0.89643 0.87380 0.88412 0.89228 0.89047 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.09 -0.85 2.92 -90.62 -0.26 -1.12 16 3 C -0.15 -1.48 8.95 37.16 0.33 -1.14 16 4 C -0.11 -1.26 4.69 -26.73 -0.13 -1.39 16 5 C -0.64 -8.37 5.93 37.16 0.22 -8.15 16 6 S 2.60 48.54 5.37 -107.50 -0.58 47.96 16 7 O -0.97 -19.40 16.52 -57.54 -0.95 -20.35 16 8 O -0.94 -21.66 16.99 -57.54 -0.98 -22.64 16 9 N -0.98 -19.11 2.70 -115.67 -0.31 -19.43 16 10 C 0.23 5.18 4.08 -5.20 -0.02 5.16 16 11 C -0.53 -14.91 9.94 -34.44 -0.34 -15.26 16 12 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 13 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 14 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 15 Si 0.87 20.94 27.47 -169.99 -4.67 16.27 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 19 C 0.15 2.52 5.94 -4.05 -0.02 2.50 16 20 C -0.17 -2.34 6.01 -90.62 -0.54 -2.88 16 21 C -0.19 -2.15 10.18 -26.73 -0.27 -2.42 16 22 C -0.17 -1.95 10.25 -26.73 -0.27 -2.23 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.59 6.56 -51.93 -0.34 0.25 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.13 1.57 6.56 -51.92 -0.34 1.23 16 33 H 0.13 1.41 8.14 -51.92 -0.42 0.99 16 34 H 0.03 0.74 7.17 -51.93 -0.37 0.36 16 35 H 0.03 0.63 7.04 -51.93 -0.37 0.27 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.09 1.66 8.11 -51.93 -0.42 1.24 16 38 H 0.09 1.40 6.54 -51.93 -0.34 1.06 16 39 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 359.54 15.07 5.42 5.42 Total: -1.00 -34.04 359.54 -10.05 -44.09 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.68 Total: 1.37 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -1.07 Total: -25.86 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.46 Total: -46.26 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -1.93 Total: -42.99 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.58 Total: 47.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.04 -10.05 -44.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355414529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.339 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds