Wall clock time and date at job start Tue Mar 31 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42903 * 109.47011 * 2 1 4 4 C 1.50705 * 109.47352 * 119.99432 * 2 1 3 5 5 O 1.21286 * 119.99640 * 94.99534 * 4 2 1 6 6 N 1.34773 * 120.00111 * 275.00744 * 4 2 1 7 7 C 1.39240 * 119.99922 * 174.42242 * 6 4 2 8 8 C 1.39484 * 119.83381 * 325.28639 * 7 6 4 9 9 C 1.36368 * 120.16906 * 180.22914 * 8 7 6 10 10 C 1.40868 * 119.83172 * 359.50791 * 9 8 7 11 11 C 1.41145 * 120.17021 * 180.25080 * 10 9 8 12 12 H 1.08004 * 120.00180 * 34.62840 * 11 10 9 13 13 C 1.39910 * 120.00047 * 214.63893 * 11 10 9 14 14 N 1.30872 * 119.99937 * 5.44069 * 13 11 10 15 15 Si 1.86804 * 119.99841 * 185.44195 * 13 11 10 16 16 H 1.48492 * 109.47164 * 59.99944 * 15 13 11 17 17 H 1.48503 * 109.46842 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46825 * 299.99653 * 15 13 11 19 19 C 1.40874 * 119.66883 * 0.48681 * 10 9 8 20 20 C 1.36375 * 119.82735 * 359.76579 * 19 10 9 21 21 C 1.52996 * 109.47208 * 239.99524 * 2 1 3 22 22 C 1.53784 * 113.61172 * 157.49561 * 21 2 1 23 23 C 1.53781 * 87.08036 * 220.02133 * 22 21 2 24 24 C 1.53777 * 87.08109 * 25.43530 * 23 22 21 25 25 H 1.09001 * 109.47311 * 300.00149 * 1 2 3 26 26 H 1.08997 * 109.47262 * 60.00005 * 1 2 3 27 27 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 28 28 H 0.96706 * 113.99727 * 180.02562 * 3 2 1 29 29 H 0.96992 * 120.00011 * 354.41653 * 6 4 2 30 30 H 1.07999 * 119.91335 * 359.96062 * 8 7 6 31 31 H 1.07999 * 120.08669 * 179.74650 * 9 8 7 32 32 H 0.97001 * 119.99902 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.08538 * 179.73307 * 19 10 9 34 34 H 1.08002 * 119.91593 * 179.97438 * 20 19 10 35 35 H 1.08991 * 112.85372 * 288.80254 * 21 2 1 36 36 H 1.09002 * 113.61620 * 334.57025 * 22 21 2 37 37 H 1.09003 * 113.61164 * 105.47420 * 22 21 2 38 38 H 1.08998 * 113.61438 * 270.88255 * 23 22 21 39 39 H 1.08998 * 113.69112 * 139.99393 * 23 22 21 40 40 H 1.09003 * 113.61441 * 220.02081 * 24 23 22 41 41 H 1.08997 * 113.61663 * 89.11708 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.3207 -1.8871 1.1761 6 7 2.1610 -0.0379 2.3915 7 6 2.5132 -0.7178 3.5544 8 6 2.0582 -2.0199 3.7618 9 6 2.3952 -2.6904 4.9005 10 6 3.2135 -2.0685 5.8638 11 6 3.5710 -2.7578 7.0425 12 1 3.7359 -3.8248 7.0151 13 6 3.7114 -2.0589 8.2463 14 7 3.4086 -0.7870 8.3037 15 14 4.3312 -2.9413 9.7717 16 1 5.6884 -3.4849 9.5120 17 1 4.3890 -1.9858 10.9071 18 1 3.4081 -4.0547 10.1089 19 6 3.6691 -0.7532 5.6472 20 6 3.3196 -0.0935 4.5060 21 6 2.0400 -0.7213 -1.2491 22 6 3.4726 -0.3277 -1.6460 23 6 2.9922 -0.3574 -3.1065 24 6 1.5811 -0.0724 -2.5657 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 2.9703 1.4236 -0.0004 29 1 2.0082 0.9196 2.4168 30 1 1.4339 -2.4967 3.0207 31 1 2.0388 -3.6971 5.0616 32 1 3.5064 -0.3023 9.1383 33 1 4.2933 -0.2684 6.3833 34 1 3.6678 0.9151 4.3387 35 1 1.8759 -1.7982 -1.2127 36 1 3.7638 0.6649 -1.3022 37 1 4.2151 -1.0915 -1.4149 38 1 3.0897 -1.3350 -3.5784 39 1 3.3969 0.4496 -3.7172 40 1 0.7966 -0.6301 -3.0771 41 1 1.3552 0.9899 -2.4733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362443856.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:04 Heat of formation + Delta-G solvation = -49.637495 kcal Electronic energy + Delta-G solvation = -22863.617203 eV Core-core repulsion = 19515.620278 eV Total energy + Delta-G solvation = -3347.996925 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.70156 -38.80288 -37.16745 -36.02352 -34.41170 -32.84308 -31.47378 -29.61328 -28.88695 -26.32713 -25.45151 -25.16901 -23.08535 -21.47433 -20.72677 -19.66501 -19.34053 -17.96343 -17.28346 -17.01712 -16.12263 -15.33627 -15.15674 -14.96991 -14.73801 -13.95645 -13.62812 -13.44627 -12.90023 -12.70976 -12.63454 -12.52094 -12.36046 -12.16952 -12.01599 -11.77450 -11.68761 -11.50354 -11.40509 -11.13578 -10.95341 -10.68047 -10.55749 -10.43294 -10.15899 -10.00057 -9.76100 -9.28593 -9.08192 -8.72181 -7.58315 -6.90455 -6.68129 -4.33579 2.47679 2.99536 3.05648 3.08384 3.11565 3.32329 3.56822 3.96702 4.04363 4.38992 4.46970 4.60006 4.67336 4.71405 5.01593 5.11539 5.26495 5.49924 5.59562 5.61996 5.65171 5.67508 5.74475 5.76293 5.87242 6.02457 6.10515 6.16660 6.35869 6.38099 6.73637 6.87664 7.04054 7.18011 7.24405 7.32825 7.58711 7.70494 7.83844 8.03285 8.25238 8.27009 8.58572 8.72229 8.89769 8.97571 10.27565 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.040964 B = 0.003217 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.360289 B = 8700.491028 C = 8797.582912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 O -0.551 6.551 4 C 0.475 3.525 5 O -0.527 6.527 6 N -0.643 5.643 7 C 0.003 3.997 8 C -0.082 4.082 9 C -0.206 4.206 10 C 0.107 3.893 11 C -0.465 4.465 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.810 5.810 15 Si 0.913 3.087 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.266 1.266 19 C -0.139 4.139 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.130 4.130 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.378 0.622 29 H 0.400 0.600 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.279 0.721 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 5.032 -15.515 16.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.086 3.914 3 O -0.359 6.359 4 C 0.261 3.739 5 O -0.404 6.404 6 N -0.286 5.286 7 C -0.090 4.090 8 C -0.102 4.102 9 C -0.226 4.226 10 C 0.105 3.895 11 C -0.496 4.496 12 H 0.094 0.906 13 C -0.143 4.143 14 N -0.437 5.437 15 Si 0.738 3.262 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.159 4.159 20 C -0.138 4.138 21 C -0.141 4.141 22 C -0.179 4.179 23 C -0.176 4.176 24 C -0.168 4.168 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.228 0.772 29 H 0.234 0.766 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.943 4.521 -15.389 16.307 hybrid contribution 0.755 0.037 0.896 1.172 sum -2.188 4.558 -14.493 15.349 Atomic orbital electron populations 1.21681 0.90639 1.03215 1.03545 1.21316 0.96254 0.81969 0.91895 1.86542 1.27294 1.25215 1.96818 1.21236 0.79387 0.88274 0.85037 1.90694 1.48755 1.16053 1.84883 1.43050 1.67114 1.11420 1.07041 1.17247 1.08076 0.94991 0.88637 1.20236 0.99583 0.93615 0.96725 1.20784 1.04424 1.00407 0.96975 1.17671 0.88326 0.91954 0.91586 1.19469 1.41930 0.95734 0.92443 0.90565 1.25860 0.92921 0.94799 1.00732 1.69775 1.36811 1.08847 1.28261 0.86294 0.80185 0.79793 0.79945 1.18984 1.20418 1.19105 1.20941 1.02513 0.96588 0.95848 1.20278 0.99179 0.98573 0.95745 1.23071 0.96716 1.01410 0.92922 1.22945 0.96651 1.01692 0.96605 1.22740 0.96888 1.01825 0.96149 1.22925 0.96858 1.01446 0.95541 0.91368 0.90759 0.90539 0.77210 0.76550 0.88197 0.88560 0.91011 0.86103 0.89065 0.87296 0.90178 0.91010 0.90241 0.91485 0.91545 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.63 37.16 0.32 -1.19 16 2 C 0.13 1.63 0.91 -91.77 -0.08 1.55 16 3 O -0.55 -6.13 11.50 -35.23 -0.41 -6.53 16 4 C 0.48 8.12 6.39 -10.98 -0.07 8.05 16 5 O -0.53 -10.98 13.71 5.55 0.08 -10.91 16 6 N -0.64 -11.45 5.25 -9.74 -0.05 -11.50 16 7 C 0.00 0.06 6.26 -83.57 -0.52 -0.46 16 8 C -0.08 -1.96 8.57 -39.79 -0.34 -2.30 16 9 C -0.21 -5.24 9.74 -39.26 -0.38 -5.63 16 10 C 0.11 2.88 5.50 -106.80 -0.59 2.29 16 11 C -0.47 -12.45 9.03 -37.85 -0.34 -12.79 16 12 H 0.08 1.97 7.85 -52.48 -0.41 1.55 16 13 C 0.07 1.83 5.31 -17.33 -0.09 1.74 16 14 N -0.81 -20.99 10.96 55.55 0.61 -20.38 16 15 Si 0.91 18.92 29.56 -169.99 -5.03 13.90 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 19 C -0.14 -3.57 8.57 -39.26 -0.34 -3.91 16 20 C -0.12 -2.69 9.90 -39.79 -0.39 -3.09 16 21 C -0.12 -1.40 2.74 -89.81 -0.25 -1.65 16 22 C -0.14 -1.47 7.40 -25.92 -0.19 -1.67 16 23 C -0.14 -1.21 8.08 -25.92 -0.21 -1.42 16 24 C -0.13 -1.19 6.58 -25.92 -0.17 -1.36 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.38 3.48 6.81 45.56 0.31 3.79 16 29 H 0.40 6.05 8.17 -40.82 -0.33 5.71 16 30 H 0.10 2.35 6.50 -52.49 -0.34 2.01 16 31 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 32 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 33 H 0.12 3.19 6.46 -52.49 -0.34 2.85 16 34 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 35 H 0.11 1.43 7.62 -51.93 -0.40 1.04 16 36 H 0.08 0.73 5.90 -51.93 -0.31 0.42 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.80 7.77 -51.93 -0.40 0.39 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -29.65 333.70 -8.54 -38.19 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: -5.12 Total: 14.06 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.65 Total: -21.85 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.56 Total: -31.88 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.33 Total: -17.44 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.65 -8.54 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362443856.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.447 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds