Wall clock time and date at job start Tue Mar 31 2020 05:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42904 * 109.46839 * 2 1 4 4 C 1.50695 * 109.47070 * 240.00029 * 2 1 3 5 5 O 1.21288 * 120.00059 * 264.99711 * 4 2 1 6 6 N 1.34779 * 119.99971 * 84.99875 * 4 2 1 7 7 C 1.39237 * 119.99951 * 186.16029 * 6 4 2 8 8 C 1.39488 * 119.83484 * 216.75930 * 7 6 4 9 9 C 1.36371 * 120.16863 * 179.76101 * 8 7 6 10 10 C 1.40867 * 119.82757 * 0.50985 * 9 8 7 11 11 C 1.41159 * 120.16082 * 179.71775 * 10 9 8 12 12 H 1.08001 * 119.99590 * 159.96221 * 11 10 9 13 13 C 1.39902 * 120.00450 * 339.96960 * 11 10 9 14 14 N 1.30877 * 119.99595 * 328.92987 * 13 11 10 15 15 Si 1.86798 * 120.00290 * 148.93091 * 13 11 10 16 16 H 1.48490 * 109.47118 * 94.98696 * 15 13 11 17 17 H 1.48503 * 109.46758 * 214.98916 * 15 13 11 18 18 H 1.48496 * 109.46767 * 334.98396 * 15 13 11 19 19 C 1.40864 * 119.67386 * 359.74507 * 10 9 8 20 20 C 1.36377 * 119.83129 * 359.97438 * 19 10 9 21 21 C 1.52995 * 109.47154 * 119.99907 * 2 1 3 22 22 C 1.53785 * 113.61440 * 282.06035 * 21 2 1 23 23 C 1.53780 * 87.07992 * 220.01963 * 22 21 2 24 24 C 1.53778 * 87.08272 * 25.43216 * 23 22 21 25 25 H 1.08996 * 109.46832 * 304.54882 * 1 2 3 26 26 H 1.08996 * 109.47201 * 64.55164 * 1 2 3 27 27 H 1.08997 * 109.46772 * 184.54891 * 1 2 3 28 28 H 0.96693 * 113.99885 * 180.02562 * 3 2 1 29 29 H 0.96998 * 120.00425 * 6.16247 * 6 4 2 30 30 H 1.08000 * 119.91042 * 0.02562 * 8 7 6 31 31 H 1.08005 * 120.08389 * 180.25739 * 9 8 7 32 32 H 0.96995 * 119.99765 * 180.02562 * 14 13 11 33 33 H 1.08008 * 120.08632 * 179.97438 * 19 10 9 34 34 H 1.07996 * 119.91601 * 179.97438 * 20 19 10 35 35 H 1.08995 * 112.85011 * 53.36815 * 21 2 1 36 36 H 1.08999 * 113.61481 * 334.56762 * 22 21 2 37 37 H 1.09004 * 113.61001 * 105.47236 * 22 21 2 38 38 H 1.09003 * 113.61647 * 270.88122 * 23 22 21 39 39 H 1.09000 * 113.61492 * 139.98021 * 23 22 21 40 40 H 1.09002 * 113.61609 * 220.01384 * 24 23 22 41 41 H 1.09006 * 113.68936 * 89.12929 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.3209 -1.8872 -1.1760 6 7 2.1610 -0.0380 -2.3914 7 6 2.5013 -0.7198 -3.5567 8 6 3.3428 -0.1180 -4.4923 9 6 3.6844 -0.7815 -5.6337 10 6 3.1765 -2.0737 -5.8717 11 6 3.5207 -2.7645 -7.0536 12 1 3.4155 -3.8383 -7.1015 13 6 3.9984 -2.0583 -8.1628 14 7 3.5922 -0.8339 -8.3834 15 14 5.2158 -2.8629 -9.3289 16 1 4.4831 -3.4638 -10.4721 17 1 6.1677 -1.8407 -9.8333 18 1 5.9645 -3.9236 -8.6082 19 6 2.3229 -2.6728 -4.9247 20 6 1.9948 -1.9992 -3.7852 21 6 2.0401 -0.7212 1.2492 22 6 1.9678 0.1327 2.5262 23 6 3.3341 -0.4617 2.9066 24 6 3.5696 -0.6804 1.4028 25 1 -0.3633 0.5828 0.8464 26 1 -0.3633 0.4416 -0.9279 27 1 -0.3633 -1.0244 0.0815 28 1 2.9702 1.4237 -0.0004 29 1 2.0167 0.9209 -2.4152 30 1 3.7282 0.8744 -4.3102 31 1 4.3394 -0.3158 -6.3552 32 1 3.9231 -0.3444 -9.1526 33 1 1.9293 -3.6631 -5.1006 34 1 1.3402 -2.4570 -3.0584 35 1 1.6161 -1.7186 1.3648 36 1 1.9961 1.2056 2.3361 37 1 1.1622 -0.1577 3.2006 38 1 3.2638 -1.3881 3.4768 39 1 4.0155 0.2615 3.3546 40 1 4.0573 -1.6271 1.1703 41 1 4.0360 0.1695 0.9044 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362443857.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:13 Heat of formation + Delta-G solvation = -51.804260 kcal Electronic energy + Delta-G solvation = -22913.080448 eV Core-core repulsion = 19564.989565 eV Total energy + Delta-G solvation = -3348.090883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.59 seconds Orbital eigenvalues (eV) -40.65508 -38.69749 -37.11659 -36.00406 -34.43376 -32.93768 -31.44617 -29.57932 -28.97214 -26.22138 -25.49866 -25.16460 -23.01675 -21.43760 -20.67215 -19.66362 -19.32652 -17.94804 -17.34595 -16.93852 -16.08654 -15.36168 -15.16870 -14.89709 -14.69559 -13.99413 -13.59272 -13.35974 -12.87679 -12.70225 -12.68942 -12.48826 -12.29379 -12.14957 -12.09378 -12.00297 -11.68275 -11.42970 -11.34692 -11.15443 -10.94922 -10.66184 -10.55447 -10.41090 -10.11395 -10.03943 -9.72516 -9.35689 -8.97963 -8.65767 -7.56709 -7.14442 -6.90169 -4.28612 2.52479 2.93389 3.03722 3.08158 3.10896 3.35235 3.61307 3.87528 4.07501 4.44338 4.48800 4.52803 4.64170 4.77490 5.06476 5.17343 5.24024 5.54332 5.64003 5.64368 5.67947 5.70781 5.75977 5.80049 5.97237 6.04180 6.14875 6.18612 6.37031 6.40302 6.77778 6.92537 6.98789 7.13977 7.26565 7.34051 7.55124 7.71197 7.88705 8.00196 8.23111 8.31077 8.53635 8.76586 8.82561 8.99167 10.00694 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035801 B = 0.003326 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.904353 B = 8415.825459 C = 8518.303516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.129 3.871 3 O -0.550 6.550 4 C 0.475 3.525 5 O -0.527 6.527 6 N -0.641 5.641 7 C -0.021 4.021 8 C -0.102 4.102 9 C -0.170 4.170 10 C 0.111 3.889 11 C -0.462 4.462 12 H 0.082 0.918 13 C 0.086 3.914 14 N -0.770 5.770 15 Si 0.898 3.102 16 H -0.269 1.269 17 H -0.274 1.274 18 H -0.257 1.257 19 C -0.224 4.224 20 C -0.066 4.066 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.377 0.623 29 H 0.398 0.602 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.283 0.717 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.797 5.044 14.787 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.085 3.915 3 O -0.357 6.357 4 C 0.260 3.740 5 O -0.404 6.404 6 N -0.285 5.285 7 C -0.113 4.113 8 C -0.122 4.122 9 C -0.190 4.190 10 C 0.108 3.892 11 C -0.490 4.490 12 H 0.100 0.900 13 C -0.136 4.136 14 N -0.393 5.393 15 Si 0.722 3.278 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.244 4.244 20 C -0.085 4.085 21 C -0.137 4.137 22 C -0.169 4.169 23 C -0.179 4.179 24 C -0.174 4.174 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.226 0.774 29 H 0.232 0.768 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.255 4.538 14.666 15.517 hybrid contribution 1.062 0.081 -0.741 1.298 sum -1.192 4.619 13.925 14.719 Atomic orbital electron populations 1.21675 0.90779 1.03137 1.03498 1.21341 0.96186 0.81982 0.92007 1.86531 1.27119 1.25202 1.96802 1.21183 0.79565 0.88315 0.84939 1.90696 1.48754 1.16049 1.84880 1.42999 1.67490 1.11094 1.06892 1.17072 1.08974 0.96067 0.89199 1.20177 0.98101 0.98404 0.95551 1.20683 1.04396 0.96941 0.96980 1.17593 0.88187 0.91413 0.91959 1.19538 1.37889 0.95413 0.96164 0.90042 1.25960 0.94892 0.94451 0.98248 1.69939 1.32665 1.11449 1.25266 0.86468 0.80977 0.80485 0.79913 1.19443 1.19868 1.18099 1.20560 1.05609 1.00815 0.97408 1.20155 0.98478 0.93699 0.96206 1.23006 0.96998 1.00238 0.93483 1.22945 0.97348 1.00398 0.96174 1.22789 0.97585 1.01037 0.96440 1.22878 0.95873 1.02403 0.96213 0.90825 0.91433 0.90584 0.77391 0.76781 0.89296 0.87122 0.90586 0.88773 0.88637 0.87803 0.89085 0.91648 0.90280 0.91538 0.90770 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.77 37.16 0.33 -1.22 16 2 C 0.13 1.65 0.90 -91.77 -0.08 1.56 16 3 O -0.55 -6.19 10.95 -35.23 -0.39 -6.57 16 4 C 0.47 8.21 6.02 -10.99 -0.07 8.15 16 5 O -0.53 -11.12 14.09 5.55 0.08 -11.04 16 6 N -0.64 -11.61 5.24 -9.74 -0.05 -11.66 16 7 C -0.02 -0.48 6.21 -83.57 -0.52 -1.00 16 8 C -0.10 -2.37 9.90 -39.79 -0.39 -2.76 16 9 C -0.17 -4.38 8.73 -39.26 -0.34 -4.72 16 10 C 0.11 2.99 5.60 -106.80 -0.60 2.39 16 11 C -0.46 -12.24 8.96 -37.85 -0.34 -12.58 16 12 H 0.08 2.09 8.01 -52.49 -0.42 1.67 16 13 C 0.09 2.12 4.84 -17.34 -0.08 2.04 16 14 N -0.77 -19.38 11.54 55.55 0.64 -18.74 16 15 Si 0.90 18.18 29.65 -169.99 -5.04 13.14 16 16 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 19 C -0.22 -5.74 9.74 -39.26 -0.38 -6.12 16 20 C -0.07 -1.59 8.57 -39.79 -0.34 -1.93 16 21 C -0.12 -1.38 2.46 -89.81 -0.22 -1.60 16 22 C -0.13 -1.22 7.44 -25.92 -0.19 -1.42 16 23 C -0.14 -1.29 8.08 -25.92 -0.21 -1.50 16 24 C -0.14 -1.55 6.99 -25.92 -0.18 -1.73 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.38 3.51 7.24 45.56 0.33 3.84 16 29 H 0.40 6.14 8.17 -40.82 -0.33 5.81 16 30 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.11 2.89 6.34 -52.48 -0.33 2.55 16 32 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 33 H 0.09 2.29 8.06 -52.48 -0.42 1.87 16 34 H 0.10 2.27 6.70 -52.49 -0.35 1.92 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.09 0.84 7.12 -51.93 -0.37 0.47 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.79 6.45 -51.93 -0.33 0.45 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -29.41 335.57 -8.50 -37.91 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.17 Total: 14.35 kcal Atomic # 6 Polarization: -18.82 SS G_CDS: -3.63 Total: -22.45 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.59 Total: -30.40 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.31 Total: -17.61 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.04 Total: 13.14 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.41 -8.50 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362443857.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.893 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.59 seconds