Wall clock time and date at job start Tue Mar 31 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47290 * 2 1 4 4 C 1.53004 * 109.47169 * 185.85622 * 3 2 1 5 5 C 1.50698 * 115.54745 * 290.57600 * 4 3 2 6 6 O 1.21287 * 120.00312 * 122.25196 * 5 4 3 7 7 N 1.34776 * 119.99957 * 302.25144 * 5 4 3 8 8 C 1.39996 * 119.99932 * 174.32076 * 7 5 4 9 9 C 1.38915 * 120.00583 * 27.72723 * 8 7 5 10 10 C 1.37999 * 120.00318 * 180.25830 * 9 8 7 11 11 C 1.38907 * 119.99944 * 359.51302 * 10 9 8 12 12 O 1.35780 * 119.99885 * 180.25479 * 11 10 9 13 13 C 1.34805 * 117.00113 * 353.12149 * 12 11 10 14 14 H 1.08000 * 120.00086 * 5.23570 * 13 12 11 15 15 C 1.38633 * 120.00191 * 185.23490 * 13 12 11 16 16 N 1.31575 * 119.99850 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00238 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47194 * 59.99638 * 17 15 13 19 19 H 1.48494 * 109.47498 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47088 * 299.99955 * 17 15 13 21 21 C 1.38907 * 120.00260 * 0.23716 * 11 10 9 22 22 C 1.38005 * 120.00219 * 359.97438 * 21 11 10 23 23 C 1.52995 * 117.50082 * 76.24683 * 4 3 2 24 24 C 1.52997 * 117.49880 * 144.90776 * 4 3 2 25 25 H 1.08997 * 109.47645 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47123 * 300.00604 * 1 2 3 27 27 H 1.09010 * 109.46907 * 59.99998 * 1 2 3 28 28 H 1.08996 * 109.47104 * 239.99524 * 2 1 3 29 29 H 1.08997 * 109.46621 * 120.00048 * 2 1 3 30 30 H 1.08997 * 109.47795 * 65.85553 * 3 2 1 31 31 H 1.09003 * 109.47341 * 305.85467 * 3 2 1 32 32 H 0.97003 * 120.00360 * 354.31573 * 7 5 4 33 33 H 1.08001 * 119.99949 * 0.03512 * 9 8 7 34 34 H 1.08000 * 120.00129 * 179.79510 * 10 9 8 35 35 H 0.96996 * 119.99684 * 180.02562 * 16 15 13 36 36 H 1.08003 * 120.00285 * 180.02562 * 21 11 10 37 37 H 1.08000 * 119.99802 * 180.02562 * 22 21 11 38 38 H 1.08998 * 117.50139 * 215.00865 * 23 4 3 39 39 H 1.09004 * 117.49407 * 0.02562 * 23 4 3 40 40 H 1.09000 * 117.50185 * 359.97040 * 24 4 3 41 41 H 1.08999 * 117.49894 * 144.97756 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5630 1.4449 -0.1472 5 6 4.3315 0.9251 1.0403 6 8 5.0911 -0.0112 0.9085 7 7 4.1747 1.5006 2.2489 8 6 4.7953 0.9455 3.3743 9 6 5.9705 0.2185 3.2319 10 6 6.5793 -0.3331 4.3406 11 6 6.0225 -0.1530 5.6004 12 8 6.6244 -0.6914 6.6920 13 6 7.6756 -1.5060 6.4718 14 1 8.0563 -1.6376 5.4697 15 6 8.2682 -2.1749 7.5317 16 7 7.8049 -2.0142 8.7526 17 14 9.7254 -3.3031 7.2267 18 1 10.8382 -2.5235 6.6273 19 1 10.1725 -3.8934 8.5139 20 1 9.3246 -4.3890 6.2964 21 6 4.8503 0.5783 5.7436 22 6 4.2390 1.1264 4.6343 23 6 4.1388 1.1684 -1.5374 24 6 4.1929 2.5824 -0.9535 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.7649 1.9252 0.9377 31 1 1.5936 1.9857 -0.8329 32 1 3.6320 2.2996 2.3389 33 1 6.4057 0.0820 2.2529 34 1 7.4911 -0.9011 4.2295 35 1 8.2197 -2.4819 9.4942 36 1 4.4176 0.7188 6.7232 37 1 3.3277 1.6953 4.7458 38 1 5.0735 0.6105 -1.5932 39 1 3.4326 0.9852 -2.3473 40 1 3.5224 3.3287 -1.3796 41 1 5.1631 2.9549 -0.6249 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389240300.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:10 Heat of formation + Delta-G solvation = -19.993920 kcal Electronic energy + Delta-G solvation = -22299.568250 eV Core-core repulsion = 18952.856767 eV Total energy + Delta-G solvation = -3346.711484 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -40.54316 -38.89067 -37.48466 -36.21299 -34.10060 -33.82221 -32.15116 -30.17604 -28.43601 -27.45405 -25.34065 -23.73961 -22.83712 -22.27929 -21.66108 -20.93543 -19.29595 -18.01178 -17.51967 -16.74154 -16.41171 -15.53648 -15.34267 -14.62254 -14.51197 -14.37051 -13.94000 -13.69419 -13.55629 -13.48957 -13.11376 -12.86508 -12.50408 -12.46063 -11.92911 -11.77406 -11.73720 -11.55661 -11.54392 -11.48464 -11.00600 -10.94713 -10.75457 -10.59795 -10.43892 -10.20034 -9.65194 -9.57992 -9.07836 -8.67693 -8.18418 -6.88436 -6.41745 -3.99344 2.06566 2.23568 2.77987 3.16567 3.17372 3.20150 3.24988 3.51648 4.00530 4.30575 4.52780 4.59043 4.59703 4.74524 4.91632 5.01289 5.11594 5.14496 5.29102 5.35987 5.43368 5.50393 5.60699 5.61762 5.67738 5.69822 5.80943 5.87823 5.92801 6.00600 6.12357 6.16620 6.19531 6.36983 6.74953 6.87584 7.02664 7.12037 7.33271 7.47269 7.75122 7.81204 8.03491 8.38874 9.04052 9.73729 10.76217 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024811 B = 0.003235 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.257215 B = 8652.439425 C = 8973.427153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.075 4.075 4 C -0.159 4.159 5 C 0.543 3.457 6 O -0.523 6.523 7 N -0.652 5.652 8 C 0.036 3.964 9 C -0.077 4.077 10 C -0.219 4.219 11 C 0.144 3.856 12 O -0.178 6.178 13 C -0.391 4.391 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.940 3.060 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.269 1.269 21 C -0.176 4.176 22 C -0.097 4.097 23 C -0.143 4.143 24 C -0.159 4.159 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.402 0.598 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.270 0.730 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 8.836 -17.693 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.112 4.112 4 C -0.162 4.162 5 C 0.329 3.671 6 O -0.399 6.399 7 N -0.295 5.295 8 C -0.057 4.057 9 C -0.096 4.096 10 C -0.239 4.239 11 C 0.090 3.910 12 O -0.081 6.081 13 C -0.467 4.467 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.196 4.196 22 C -0.117 4.117 23 C -0.180 4.180 24 C -0.196 4.196 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.236 0.764 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -10.800 8.083 -17.314 21.949 hybrid contribution 0.420 -0.171 -0.044 0.456 sum -10.380 7.913 -17.358 21.718 Atomic orbital electron populations 1.21766 0.95663 1.01803 1.01593 1.21504 0.95660 0.96275 1.02860 1.21123 0.89761 0.97766 1.02578 1.21520 0.95866 1.06334 0.92480 1.19494 0.81925 0.82515 0.83128 1.90647 1.36767 1.28310 1.84180 1.43129 1.50665 1.29341 1.06400 1.17351 0.96278 1.06480 0.85553 1.21172 0.92896 0.96265 0.99313 1.21144 1.03443 1.07345 0.91946 1.19420 0.91569 0.92687 0.87322 1.83966 1.42068 1.54815 1.27281 1.21288 1.06988 1.22681 0.95735 0.89114 1.25274 0.99123 0.97647 0.94443 1.70037 1.40188 1.40806 0.98898 0.85790 0.80036 0.79701 0.77985 1.19493 1.20296 1.19458 1.19987 0.96384 1.04785 0.98448 1.20314 0.99038 1.01567 0.90832 1.22982 1.03293 0.98170 0.93579 1.23115 1.02444 0.91791 1.02261 0.92637 0.92694 0.92881 0.91640 0.91745 0.91206 0.90935 0.76354 0.84569 0.85264 0.92013 0.86076 0.86793 0.87646 0.88012 0.87861 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.18 5.77 -26.73 -0.15 -1.33 16 3 C -0.07 -0.61 5.07 -26.73 -0.14 -0.75 16 4 C -0.16 -1.61 1.88 -155.66 -0.29 -1.91 16 5 C 0.54 7.88 6.71 -10.99 -0.07 7.81 16 6 O -0.52 -9.75 13.50 5.55 0.07 -9.68 16 7 N -0.65 -9.15 5.35 -9.82 -0.05 -9.21 16 8 C 0.04 0.65 6.43 -83.62 -0.54 0.11 16 9 C -0.08 -1.59 8.78 -39.42 -0.35 -1.94 16 10 C -0.22 -5.06 9.16 -39.42 -0.36 -5.42 16 11 C 0.14 3.55 6.64 -39.09 -0.26 3.29 16 12 O -0.18 -5.15 9.75 0.03 0.00 -5.15 16 13 C -0.39 -11.16 9.48 30.88 0.29 -10.87 16 14 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 15 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 16 N -0.86 -25.63 13.67 55.48 0.76 -24.88 16 17 Si 0.94 20.98 29.55 -169.99 -5.02 15.95 16 18 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C -0.18 -3.72 9.98 -39.42 -0.39 -4.11 16 22 C -0.10 -1.72 9.94 -39.41 -0.39 -2.11 16 23 C -0.14 -1.33 9.68 -26.70 -0.26 -1.59 16 24 C -0.16 -1.30 9.91 -26.70 -0.26 -1.56 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.08 16 28 H 0.06 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.06 0.76 8.01 -51.93 -0.42 0.35 16 30 H 0.07 0.53 8.01 -51.93 -0.42 0.12 16 31 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 32 H 0.40 4.21 8.66 -40.82 -0.35 3.85 16 33 H 0.14 2.84 5.62 -52.49 -0.30 2.54 16 34 H 0.13 3.01 5.65 -52.49 -0.30 2.71 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 37 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.11 1.16 7.86 -51.93 -0.41 0.75 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 346.42 15.07 5.22 5.22 Total: -1.00 -32.91 346.42 -7.74 -40.64 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.81 Total: 7.26 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -2.90 Total: -20.17 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.71 Total: -34.08 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: 0.08 Total: -14.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.91 -7.74 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389240300.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.649 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.10 seconds