Wall clock time and date at job start Tue Mar 31 2020 07:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47185 * 2 1 4 4 C 1.53006 * 109.47102 * 120.00164 * 2 1 3 5 5 C 1.52997 * 109.47127 * 175.00294 * 4 2 1 6 6 S 1.81399 * 109.47147 * 179.97438 * 5 4 2 7 7 O 1.42097 * 110.54497 * 291.62246 * 6 5 4 8 8 O 1.42097 * 110.54090 * 68.37563 * 6 5 4 9 9 N 1.65606 * 104.44968 * 179.97438 * 6 5 4 10 10 C 1.46924 * 120.63135 * 269.72287 * 9 6 5 11 11 C 1.53613 * 108.54391 * 126.36853 * 10 9 6 12 12 C 1.53037 * 109.24276 * 54.85615 * 11 10 9 13 13 C 1.50700 * 109.45096 * 178.49660 * 12 11 10 14 14 H 1.07999 * 119.99998 * 120.05900 * 13 12 11 15 15 C 1.37876 * 120.00129 * 300.06353 * 13 12 11 16 16 N 1.31517 * 120.00539 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99834 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.46828 * 90.00357 * 17 15 13 19 19 H 1.48499 * 109.47176 * 209.99879 * 17 15 13 20 20 H 1.48495 * 109.47014 * 330.00518 * 17 15 13 21 21 C 1.53044 * 109.53803 * 298.51112 * 12 11 10 22 22 C 1.46928 * 120.62640 * 90.00264 * 9 6 5 23 23 H 1.08997 * 109.47474 * 299.99873 * 1 2 3 24 24 H 1.09002 * 109.46922 * 60.00471 * 1 2 3 25 25 H 1.09006 * 109.46822 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47521 * 239.99933 * 2 1 3 27 27 H 1.09002 * 109.47112 * 300.00053 * 3 2 1 28 28 H 1.09006 * 109.47389 * 59.99876 * 3 2 1 29 29 H 1.09003 * 109.47743 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 294.99868 * 4 2 1 31 31 H 1.08993 * 109.46955 * 55.00306 * 4 2 1 32 32 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 33 33 H 1.09004 * 109.47261 * 59.99697 * 5 4 2 34 34 H 1.09004 * 109.58510 * 246.20633 * 10 9 6 35 35 H 1.09001 * 109.58674 * 6.62510 * 10 9 6 36 36 H 1.08998 * 109.63522 * 294.85958 * 11 10 9 37 37 H 1.09000 * 109.43509 * 174.72378 * 11 10 9 38 38 H 1.09003 * 109.46226 * 58.52858 * 12 11 10 39 39 H 0.96997 * 120.00214 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.49207 * 301.40922 * 21 12 11 41 41 H 1.09005 * 109.49553 * 181.31903 * 21 12 11 42 42 H 1.08992 * 109.58999 * 353.36776 * 22 9 6 43 43 H 1.08997 * 109.58649 * 113.65836 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8310 1.1880 6 16 4.1695 -1.6855 2.6695 7 8 3.9768 -0.8794 3.8237 8 8 3.7736 -3.0502 2.6545 9 7 5.8134 -1.7357 2.4755 10 6 6.4527 -2.8707 1.7959 11 6 7.3348 -2.3271 0.6618 12 6 8.3176 -1.3030 1.2339 13 6 9.2102 -0.7939 0.1316 14 1 9.2224 0.2585 -0.1107 15 6 10.0111 -1.6716 -0.5678 16 7 10.7897 -1.2274 -1.5302 17 14 9.9904 -3.4918 -0.1484 18 1 8.9549 -4.1758 -0.9639 19 1 11.3210 -4.0824 -0.4413 20 1 9.6788 -3.6640 1.2932 21 6 7.5411 -0.1331 1.8426 22 6 6.6608 -0.6490 2.9852 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.7516 -0.1584 2.1370 31 1 1.6054 -1.7198 1.2951 32 1 3.8532 -1.3939 0.3003 33 1 3.9994 0.1676 1.1421 34 1 7.0664 -3.4238 2.5069 35 1 5.6872 -3.5274 1.3826 36 1 6.7091 -1.8493 -0.0920 37 1 7.8888 -3.1487 0.2077 38 1 8.9263 -1.7752 2.0051 39 1 11.3529 -1.8449 -2.0224 40 1 6.9135 0.3242 1.0776 41 1 8.2420 0.6070 2.2290 42 1 6.0327 0.1606 3.3567 43 1 7.2894 -1.0240 3.7928 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397193151.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:20 Heat of formation + Delta-G solvation = -93.788397 kcal Electronic energy + Delta-G solvation = -22448.435156 eV Core-core repulsion = 19233.967655 eV Total energy + Delta-G solvation = -3214.467501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.07088 -37.17341 -37.06272 -35.85297 -33.45601 -31.28010 -31.15083 -30.59188 -27.40413 -26.00201 -24.33065 -22.92661 -22.14900 -20.35580 -19.59657 -18.53014 -17.51231 -16.75810 -16.36009 -16.23448 -15.44055 -14.80282 -14.44929 -14.26505 -14.03743 -13.75517 -13.36753 -13.20328 -13.14582 -12.84552 -12.51500 -12.49521 -12.24948 -12.20373 -12.00717 -11.77646 -11.65425 -11.55526 -11.31447 -11.07101 -10.98867 -10.89131 -10.76155 -10.47285 -10.22322 -10.05178 -9.78216 -9.38382 -9.13568 -8.59293 -8.47764 -6.12322 -4.11846 0.34216 2.75175 3.21520 3.33860 3.35941 3.87309 4.18529 4.35688 4.36603 4.54071 4.60854 4.87508 4.93041 5.07715 5.17880 5.30599 5.37154 5.41541 5.46120 5.50486 5.61240 5.67948 5.70465 5.73175 5.76319 5.89949 5.90329 5.93246 6.07719 6.09829 6.11061 6.17308 6.32796 6.59821 6.65801 6.85219 6.91248 7.17080 7.46024 7.71043 8.46645 8.91583 9.50181 11.00905 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.004955 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.819508 B = 5649.911635 C = 6174.135500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 C -0.154 4.154 4 C -0.107 4.107 5 C -0.634 4.634 6 S 2.606 3.394 7 O -0.961 6.961 8 O -0.961 6.961 9 N -0.993 5.993 10 C 0.117 3.883 11 C -0.136 4.136 12 C 0.016 3.984 13 C -0.514 4.514 14 H 0.073 0.927 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.884 3.116 18 H -0.278 1.278 19 H -0.297 1.297 20 H -0.264 1.264 21 C -0.114 4.114 22 C 0.119 3.881 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.029 0.971 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 1.422 4.727 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.211 4.211 4 C -0.146 4.146 5 C -0.762 4.762 6 S 2.700 3.300 7 O -0.951 6.951 8 O -0.952 6.952 9 N -0.831 5.831 10 C -0.008 4.008 11 C -0.175 4.175 12 C -0.003 4.003 13 C -0.552 4.552 14 H 0.091 0.909 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.714 3.286 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.189 1.189 21 C -0.153 4.153 22 C -0.006 4.006 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.464 1.022 5.345 18.292 hybrid contribution 0.359 -0.695 -0.747 1.082 sum -17.105 0.326 4.597 17.715 Atomic orbital electron populations 1.21878 0.94983 1.01931 1.02003 1.21058 0.95659 0.96608 0.97556 1.21937 1.01676 0.95591 1.01906 1.21399 0.90737 1.02148 1.00283 1.30769 1.06195 1.15869 1.23412 1.05053 0.73260 0.74930 0.76723 1.93563 1.84892 1.71755 1.44927 1.93565 1.81816 1.32364 1.87441 1.57577 1.23310 1.30139 1.72086 1.21672 0.97071 0.86664 0.95400 1.22471 0.98369 1.00046 0.96631 1.19088 0.92899 0.92018 0.96306 1.21058 1.21852 0.96240 1.16062 0.90883 1.25038 0.94933 0.98672 0.94620 1.69897 1.26402 1.35271 1.22379 0.86896 0.76183 0.85907 0.79567 1.20517 1.22509 1.18852 1.21850 0.97932 0.99288 0.96264 1.21586 0.93814 0.88083 0.97147 0.92505 0.92420 0.92516 0.90624 0.92500 0.92504 0.92053 0.90503 0.90504 0.84752 0.84641 0.91411 0.90248 0.91743 0.92513 0.95278 0.92660 0.92404 0.91336 0.90213 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.09 -0.79 2.92 -90.62 -0.26 -1.06 16 3 C -0.15 -1.35 8.95 37.15 0.33 -1.01 16 4 C -0.11 -1.05 4.69 -26.73 -0.13 -1.18 16 5 C -0.63 -6.89 5.93 37.16 0.22 -6.67 16 6 S 2.61 36.94 5.41 -107.50 -0.58 36.36 16 7 O -0.96 -15.59 16.73 -57.54 -0.96 -16.56 16 8 O -0.96 -15.99 16.71 -57.54 -0.96 -16.95 16 9 N -0.99 -15.34 3.21 -113.28 -0.36 -15.71 16 10 C 0.12 1.95 6.34 -3.49 -0.02 1.92 16 11 C -0.14 -2.67 4.86 -26.39 -0.13 -2.80 16 12 C 0.02 0.34 1.65 -91.73 -0.15 0.19 16 13 C -0.51 -13.64 9.14 -34.44 -0.31 -13.95 16 14 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 15 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 16 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 17 Si 0.88 21.06 24.38 -169.99 -4.14 16.91 16 18 H -0.28 -6.40 6.86 56.52 0.39 -6.01 16 19 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -5.95 6.53 56.52 0.37 -5.58 16 21 C -0.11 -2.02 5.30 -26.61 -0.14 -2.16 16 22 C 0.12 1.81 6.31 -3.71 -0.02 1.79 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.13 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.14 1.34 6.56 -51.92 -0.34 1.00 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.19 7.09 -51.93 -0.37 0.82 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.20 3.24 -51.93 -0.17 1.03 16 38 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.07 7.10 -51.93 -0.37 0.70 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -32.25 339.69 -8.98 -41.22 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -7.48 Total: -0.41 kcal Atomic # 6 Polarization: -23.56 SS G_CDS: -0.37 Total: -23.93 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.41 Total: -41.76 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.92 Total: -33.51 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.14 Total: 16.91 kcal Atomic # 16 Polarization: 36.94 SS G_CDS: -0.58 Total: 36.36 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.25 -8.98 -41.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397193151.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.567 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds