Wall clock time and date at job start Tue Mar 31 2020 07:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46977 * 2 1 4 4 C 1.53000 * 109.47395 * 239.99678 * 2 1 3 5 5 C 1.52992 * 109.47124 * 184.99888 * 4 2 1 6 6 S 1.81401 * 109.47299 * 179.97438 * 5 4 2 7 7 O 1.42101 * 110.54284 * 291.62862 * 6 5 4 8 8 O 1.42104 * 110.54261 * 68.37411 * 6 5 4 9 9 N 1.65591 * 104.45288 * 180.02562 * 6 5 4 10 10 C 1.46932 * 120.63151 * 90.00044 * 9 6 5 11 11 C 1.53193 * 108.77581 * 126.37000 * 10 9 6 12 12 C 1.53038 * 109.31581 * 54.63541 * 11 10 9 13 13 C 1.53039 * 109.53723 * 298.63687 * 12 11 10 14 14 H 1.09000 * 109.49682 * 301.41432 * 13 12 11 15 15 C 1.50695 * 109.49856 * 181.34616 * 13 12 11 16 16 H 1.08003 * 120.00305 * 275.03637 * 15 13 12 17 17 C 1.37881 * 119.99924 * 95.02882 * 15 13 12 18 18 N 1.31519 * 119.99952 * 186.21054 * 17 15 13 19 19 Si 1.86798 * 120.00019 * 6.21531 * 17 15 13 20 20 H 1.48506 * 109.47217 * 84.76529 * 19 17 15 21 21 H 1.48499 * 109.47215 * 204.76680 * 19 17 15 22 22 H 1.48496 * 109.46837 * 324.76776 * 19 17 15 23 23 C 1.46930 * 120.63520 * 269.72134 * 9 6 5 24 24 H 1.09007 * 109.46635 * 60.00408 * 1 2 3 25 25 H 1.08998 * 109.46544 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47299 * 300.00504 * 1 2 3 27 27 H 1.08995 * 109.47011 * 119.99485 * 2 1 3 28 28 H 1.08999 * 109.47518 * 59.99630 * 3 2 1 29 29 H 1.08995 * 109.47016 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46849 * 299.99770 * 3 2 1 31 31 H 1.09000 * 109.46859 * 305.00208 * 4 2 1 32 32 H 1.09007 * 109.46912 * 64.99931 * 4 2 1 33 33 H 1.09000 * 109.47514 * 299.99919 * 5 4 2 34 34 H 1.09007 * 109.47191 * 60.00214 * 5 4 2 35 35 H 1.09001 * 109.58591 * 246.15872 * 10 9 6 36 36 H 1.09002 * 109.58269 * 6.43762 * 10 9 6 37 37 H 1.09004 * 109.49675 * 174.59094 * 11 10 9 38 38 H 1.08999 * 109.49601 * 294.64961 * 11 10 9 39 39 H 1.09001 * 109.45968 * 58.65366 * 12 11 10 40 40 H 1.08995 * 109.46257 * 178.62610 * 12 11 10 41 41 H 0.96991 * 119.99914 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.58046 * 353.41764 * 23 9 6 43 43 H 1.08997 * 109.58952 * 113.84064 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5648 -0.8310 -1.1879 6 16 4.1696 -1.6869 -2.6685 7 8 3.7736 -3.0515 -2.6524 8 8 3.9768 -0.8818 -3.8235 9 7 5.8133 -1.7370 -2.4746 10 6 6.4521 -2.8685 -1.7886 11 6 7.5405 -3.4462 -2.6987 12 6 8.5064 -2.3304 -3.1038 13 6 7.7470 -1.2536 -3.8823 14 1 7.2854 -1.6993 -4.7635 15 6 8.7051 -0.1717 -4.3092 16 1 8.9462 0.6343 -3.6319 17 6 9.2742 -0.2107 -5.5646 18 7 10.2012 0.6623 -5.8938 19 14 8.7283 -1.5033 -6.7977 20 1 7.5170 -1.0257 -7.5120 21 1 9.8180 -1.7441 -7.7774 22 1 8.4159 -2.7674 -6.0840 23 6 6.6615 -0.6538 -2.9905 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5137 0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6055 -1.7198 -1.2950 32 1 1.7517 -0.1584 -2.1370 33 1 3.9995 0.1675 -1.1420 34 1 3.8532 -1.3940 -0.3000 35 1 6.8999 -2.5249 -0.8561 36 1 5.7065 -3.6345 -1.5753 37 1 8.0864 -4.2239 -2.1646 38 1 7.0808 -3.8717 -3.5908 39 1 8.9471 -1.8892 -2.2098 40 1 9.2958 -2.7435 -3.7317 41 1 10.6012 0.6350 -6.7769 42 1 6.0545 0.0398 -3.5723 43 1 7.1267 -0.1259 -2.1581 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397675412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:34 Heat of formation + Delta-G solvation = -100.379350 kcal Electronic energy + Delta-G solvation = -22287.386035 eV Core-core repulsion = 19072.632729 eV Total energy + Delta-G solvation = -3214.753306 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -37.93513 -37.19863 -36.92744 -35.69021 -33.17862 -31.55285 -31.15534 -30.51201 -27.44520 -25.21242 -24.48643 -23.67288 -21.62543 -20.35565 -19.48282 -18.42094 -17.48855 -16.70622 -16.31454 -16.11031 -15.40444 -14.50166 -14.45566 -14.27464 -13.94898 -13.76216 -13.31581 -13.21686 -12.94818 -12.72575 -12.53519 -12.51380 -12.23471 -11.92619 -11.86832 -11.78924 -11.55542 -11.48428 -11.23013 -11.02961 -11.00282 -10.92365 -10.69960 -10.40794 -10.29841 -9.98546 -9.73000 -9.56492 -9.02690 -8.54167 -8.36707 -6.09614 -4.09036 0.42375 2.89218 3.33745 3.40851 3.45055 3.99618 4.23492 4.36608 4.44029 4.54089 4.59082 4.87544 5.00294 5.10962 5.23683 5.28114 5.34036 5.38045 5.45036 5.46990 5.57076 5.60830 5.66879 5.70661 5.82584 5.86559 5.96684 6.03312 6.07475 6.12338 6.28436 6.42753 6.45957 6.59208 6.76436 6.92192 7.05484 7.29200 7.44302 7.76867 8.47926 8.94330 9.54379 11.03157 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023934 B = 0.004545 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.580620 B = 6158.845226 C = 6473.151959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.154 4.154 4 C -0.108 4.108 5 C -0.636 4.636 6 S 2.599 3.401 7 O -0.964 6.964 8 O -0.950 6.950 9 N -0.998 5.998 10 C 0.123 3.877 11 C -0.135 4.135 12 C -0.108 4.108 13 C 0.006 3.994 14 H 0.036 0.964 15 C -0.513 4.513 16 H 0.075 0.925 17 C 0.075 3.925 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.273 1.273 21 H -0.290 1.290 22 H -0.264 1.264 23 C 0.129 3.871 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.264 0.736 42 H 0.086 0.914 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 -3.587 13.413 20.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.108 4.108 3 C -0.211 4.211 4 C -0.147 4.147 5 C -0.764 4.764 6 S 2.694 3.306 7 O -0.955 6.955 8 O -0.941 6.941 9 N -0.837 5.837 10 C -0.002 4.002 11 C -0.174 4.174 12 C -0.147 4.147 13 C -0.014 4.014 14 H 0.054 0.946 15 C -0.551 4.551 16 H 0.093 0.907 17 C -0.127 4.127 18 N -0.535 5.535 19 Si 0.700 3.300 20 H -0.199 1.199 21 H -0.216 1.216 22 H -0.188 1.188 23 C 0.005 3.995 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.152 0.848 34 H 0.147 0.853 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.424 -3.858 12.544 20.252 hybrid contribution 0.070 -0.270 -0.083 0.291 sum -15.355 -4.128 12.461 20.201 Atomic orbital electron populations 1.21884 0.94952 1.01957 1.02066 1.21053 0.95723 0.96549 0.97452 1.21942 1.01527 0.95650 1.02020 1.21403 0.90795 1.02181 1.00333 1.30795 1.06298 1.15751 1.23521 1.05271 0.73602 0.74997 0.76777 1.93545 1.82082 1.32426 1.87419 1.93605 1.84707 1.71570 1.44176 1.57764 1.23345 1.30789 1.71805 1.21373 0.96338 0.87480 0.95011 1.21963 0.97295 0.98813 0.99378 1.21778 0.97336 0.95372 1.00178 1.19351 0.93080 0.94801 0.94209 0.94583 1.20878 1.24688 1.09086 1.00485 0.90688 1.25021 0.94222 0.95393 0.98082 1.69902 1.26034 1.36503 1.21092 0.86921 0.78553 0.83078 0.81449 1.19886 1.21608 1.18828 1.21745 0.92921 0.87365 0.97485 0.92392 0.92501 0.92457 0.90860 0.92575 0.92193 0.92302 0.90502 0.90317 0.84794 0.85301 0.91941 0.90025 0.92000 0.92209 0.92703 0.92696 0.92587 0.89538 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 2 C -0.09 -0.73 2.92 -90.62 -0.26 -1.00 16 3 C -0.15 -1.27 8.95 37.16 0.33 -0.94 16 4 C -0.11 -1.07 4.69 -26.74 -0.13 -1.19 16 5 C -0.64 -6.65 5.93 37.15 0.22 -6.43 16 6 S 2.60 39.94 5.45 -107.50 -0.59 39.36 16 7 O -0.96 -16.65 16.59 -57.54 -0.95 -17.60 16 8 O -0.95 -18.18 16.58 -57.54 -0.95 -19.14 16 9 N -1.00 -16.39 3.23 -113.76 -0.37 -16.76 16 10 C 0.12 1.80 6.43 -3.71 -0.02 1.78 16 11 C -0.14 -2.26 6.08 -26.61 -0.16 -2.42 16 12 C -0.11 -2.18 5.15 -26.69 -0.14 -2.32 16 13 C 0.01 0.14 1.92 -91.88 -0.18 -0.03 16 14 H 0.04 0.89 5.24 -51.93 -0.27 0.61 16 15 C -0.51 -13.92 8.86 -34.44 -0.31 -14.22 16 16 H 0.08 2.16 8.06 -52.48 -0.42 1.74 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 19 Si 0.87 21.92 27.03 -169.99 -4.59 17.32 16 20 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.26 -6.37 6.77 56.52 0.38 -5.99 16 23 C 0.13 2.48 5.67 -3.93 -0.02 2.46 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.13 1.28 6.56 -51.92 -0.34 0.94 16 34 H 0.13 1.08 8.14 -51.92 -0.42 0.65 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.08 6.86 -51.93 -0.36 0.72 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 42 H 0.09 1.72 6.85 -51.93 -0.36 1.37 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -33.14 345.67 -9.48 -42.62 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.58 Total: -1.71 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -0.42 Total: -23.02 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.41 Total: -43.04 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.91 Total: -36.74 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.59 Total: 17.32 kcal Atomic # 16 Polarization: 39.94 SS G_CDS: -0.59 Total: 39.36 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.14 -9.48 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397675412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.762 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds