Wall clock time and date at job start Tue Mar 31 2020 07:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47073 * 2 1 4 4 C 1.53000 * 109.46894 * 120.00079 * 2 1 3 5 5 C 1.52997 * 109.47264 * 65.00293 * 4 2 1 6 6 S 1.81402 * 109.46941 * 180.02562 * 5 4 2 7 7 O 1.42099 * 110.54413 * 68.37146 * 6 5 4 8 8 O 1.42097 * 110.54144 * 291.61801 * 6 5 4 9 9 N 1.65606 * 104.44838 * 179.97438 * 6 5 4 10 10 C 1.46921 * 120.63136 * 89.99911 * 9 6 5 11 11 C 1.53192 * 108.77565 * 233.63306 * 10 9 6 12 12 C 1.53046 * 109.31128 * 305.36180 * 11 10 9 13 13 C 1.53046 * 109.53579 * 61.36447 * 12 11 10 14 14 H 1.09001 * 109.49519 * 58.58791 * 13 12 11 15 15 C 1.50695 * 109.49627 * 178.68180 * 13 12 11 16 16 H 1.08005 * 119.99644 * 119.99993 * 15 13 12 17 17 C 1.37876 * 120.00153 * 300.00294 * 15 13 12 18 18 N 1.31506 * 120.00112 * 0.02562 * 17 15 13 19 19 Si 1.86804 * 119.99765 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47512 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46828 * 120.00281 * 19 17 15 22 22 H 1.48496 * 109.47331 * 239.99927 * 19 17 15 23 23 C 1.46928 * 120.62928 * 270.02109 * 9 6 5 24 24 H 1.08996 * 109.47395 * 300.00070 * 1 2 3 25 25 H 1.09003 * 109.47283 * 60.00179 * 1 2 3 26 26 H 1.09004 * 109.47309 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47051 * 240.00248 * 2 1 3 28 28 H 1.08999 * 109.47292 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46919 * 300.00044 * 3 2 1 30 30 H 1.08996 * 109.47067 * 59.99729 * 3 2 1 31 31 H 1.08999 * 109.47322 * 304.99529 * 4 2 1 32 32 H 1.09002 * 109.47174 * 185.00297 * 4 2 1 33 33 H 1.08994 * 109.47657 * 59.99874 * 5 4 2 34 34 H 1.08997 * 109.47111 * 299.99611 * 5 4 2 35 35 H 1.08996 * 109.58905 * 113.84360 * 10 9 6 36 36 H 1.09001 * 109.70481 * 353.48713 * 10 9 6 37 37 H 1.09002 * 109.49998 * 185.41388 * 11 10 9 38 38 H 1.08995 * 109.52901 * 65.32798 * 11 10 9 39 39 H 1.08993 * 109.45866 * 181.38621 * 12 11 10 40 40 H 1.09000 * 109.45949 * 301.34958 * 12 11 10 41 41 H 0.97002 * 120.00015 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.58351 * 246.16001 * 23 9 6 43 43 H 1.09002 * 109.58642 * 6.43657 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 16 2.2393 -3.0504 2.6695 7 8 1.5434 -2.6000 3.8237 8 8 3.6578 -3.1320 2.6546 9 7 1.7375 -4.6167 2.4761 10 6 2.5910 -5.5970 1.7912 11 6 1.7861 -6.2478 0.6618 12 6 0.4924 -6.8320 1.2340 13 6 -0.3506 -5.7092 1.8433 14 1 -0.5719 -4.9646 1.0786 15 6 -1.6386 -6.2806 2.3775 16 1 -1.8787 -6.1832 3.4260 17 6 -2.5105 -6.9278 1.5278 18 7 -2.2179 -7.0469 0.2513 19 14 -4.1068 -7.6366 2.1903 20 1 -4.1986 -7.3719 3.6486 21 1 -5.2560 -6.9993 1.4987 22 1 -4.1352 -9.1018 1.9500 23 6 0.4302 -5.0523 2.9859 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6054 -0.2617 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0699 -2.6550 0.3003 34 1 0.5490 -2.2724 1.1420 35 1 2.9106 -6.3613 2.4994 36 1 3.4651 -5.0961 1.3750 37 1 2.3752 -7.0444 0.2074 38 1 1.5446 -5.4985 -0.0920 39 1 -0.0706 -7.3172 0.4368 40 1 0.7342 -7.5636 2.0049 41 1 -2.8315 -7.5019 -0.3466 42 1 0.5736 -5.7722 3.7917 43 1 -0.1218 -4.1902 3.3602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397675415.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:37 Heat of formation + Delta-G solvation = -102.880625 kcal Electronic energy + Delta-G solvation = -22471.343827 eV Core-core repulsion = 19256.482057 eV Total energy + Delta-G solvation = -3214.861769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -37.73382 -37.04349 -36.85501 -35.64712 -33.33685 -31.12181 -30.99932 -30.12357 -27.28084 -25.14181 -24.31730 -23.44409 -21.68938 -20.23374 -19.39695 -18.31003 -17.33771 -16.24648 -16.16333 -15.98389 -15.30200 -14.67238 -14.26695 -14.08479 -13.83680 -13.48530 -13.27640 -13.12632 -12.80223 -12.70470 -12.38583 -12.19530 -12.08629 -11.83114 -11.71837 -11.64381 -11.40740 -11.28059 -11.02765 -10.87316 -10.86663 -10.77028 -10.72422 -10.37544 -10.26508 -9.97329 -9.78162 -9.38064 -8.87819 -8.47304 -8.15505 -6.06295 -4.13485 0.56214 2.99219 3.25798 3.34646 3.39062 4.06816 4.36535 4.40777 4.52667 4.67894 4.73608 5.03515 5.15140 5.22757 5.26916 5.43662 5.48188 5.53366 5.60013 5.67148 5.74842 5.78928 5.83602 5.87240 5.99277 6.01517 6.20602 6.25268 6.25753 6.31108 6.47010 6.59697 6.63929 6.85615 7.01233 7.17542 7.40321 7.66459 7.87364 8.04824 8.35338 8.90544 9.52101 10.98924 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.016622 B = 0.005143 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.111029 B = 5443.450427 C = 6227.140169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.634 4.634 6 S 2.606 3.394 7 O -0.959 6.959 8 O -0.969 6.969 9 N -0.994 5.994 10 C 0.126 3.874 11 C -0.136 4.136 12 C -0.110 4.110 13 C 0.038 3.962 14 H 0.028 0.972 15 C -0.516 4.516 16 H 0.059 0.941 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.126 3.874 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.036 0.964 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.304 10.330 -2.114 13.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.145 4.145 5 C -0.763 4.763 6 S 2.700 3.300 7 O -0.950 6.950 8 O -0.959 6.959 9 N -0.833 5.833 10 C 0.000 4.000 11 C -0.175 4.175 12 C -0.148 4.148 13 C 0.018 3.982 14 H 0.046 0.954 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.137 4.137 18 N -0.528 5.528 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.002 3.998 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.148 0.852 34 H 0.156 0.844 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.727 10.582 -1.517 13.801 hybrid contribution -1.332 -0.563 -0.488 1.526 sum 7.395 10.019 -2.005 12.613 Atomic orbital electron populations 1.21944 0.94808 1.02608 1.01839 1.21050 0.96373 0.95845 0.97522 1.21879 1.00994 0.95914 1.01974 1.21391 1.01516 0.91370 1.00255 1.30771 1.14023 1.08137 1.23344 1.05012 0.74298 0.73935 0.76762 1.93568 1.75340 1.81228 1.44846 1.93540 1.28992 1.85786 1.87578 1.57632 1.28992 1.24885 1.71746 1.21376 0.91838 0.91873 0.94890 1.22028 0.98853 0.99637 0.96945 1.21577 0.92950 0.99057 1.01222 1.19003 0.92635 0.94028 0.92514 0.95351 1.21160 1.02898 1.36178 0.95208 0.92304 1.24929 0.98084 0.95919 0.94811 1.69876 1.36467 1.43162 1.03249 0.86549 0.83524 0.78761 0.79250 1.19683 1.21080 1.21057 1.21807 0.80181 0.99591 0.98196 0.92448 0.92626 0.91847 0.90788 0.92594 0.92497 0.92497 0.90500 0.90664 0.85150 0.84427 0.91658 0.90701 0.92589 0.92609 0.88776 0.94535 0.93039 0.92030 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.95 37.16 0.33 -1.30 16 2 C -0.09 -0.89 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.29 9.19 37.16 0.34 -0.94 16 4 C -0.11 -1.21 4.69 -26.73 -0.13 -1.33 16 5 C -0.63 -8.11 5.93 37.16 0.22 -7.89 16 6 S 2.61 42.01 5.41 -107.50 -0.58 41.43 16 7 O -0.96 -18.18 16.72 -57.54 -0.96 -19.14 16 8 O -0.97 -17.12 16.73 -57.54 -0.96 -18.08 16 9 N -0.99 -17.39 3.22 -113.53 -0.37 -17.76 16 10 C 0.13 2.04 6.31 -3.71 -0.02 2.01 16 11 C -0.14 -2.35 6.08 -26.61 -0.16 -2.52 16 12 C -0.11 -2.39 4.96 -26.68 -0.13 -2.52 16 13 C 0.04 0.88 2.25 -91.65 -0.21 0.67 16 14 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.52 -13.36 8.56 -34.44 -0.29 -13.66 16 16 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.89 -24.06 11.31 55.43 0.63 -23.43 16 19 Si 0.89 20.53 29.54 -169.99 -5.02 15.50 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 C 0.13 2.54 5.54 -3.71 -0.02 2.52 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.14 1.78 6.57 -51.93 -0.34 1.44 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.07 7.11 -51.93 -0.37 0.70 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.09 2.32 6.04 -51.93 -0.31 2.01 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.50 7.09 -51.93 -0.37 1.13 16 LS Contribution 346.49 15.07 5.22 5.22 Total: -1.00 -30.11 346.49 -10.09 -40.20 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.62 Total: 0.59 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -0.43 Total: -24.53 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.26 Total: -41.19 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -1.92 Total: -37.23 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 42.01 SS G_CDS: -0.58 Total: 41.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.11 -10.09 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397675415.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.684 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds