Wall clock time and date at job start Tue Mar 31 2020 06:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47054 * 2 1 4 4 C 1.52995 * 109.47285 * 119.99885 * 2 1 3 5 5 C 1.53009 * 109.47297 * 174.99951 * 4 2 1 6 6 H 1.09000 * 115.55792 * 29.31065 * 5 4 2 7 7 C 1.52994 * 117.49708 * 243.62488 * 5 4 2 8 8 C 1.52994 * 117.49999 * 174.99979 * 5 4 2 9 9 H 1.09009 * 117.51945 * 0.02562 * 8 5 4 10 10 N 1.46498 * 117.49777 * 214.97817 * 8 5 4 11 11 S 1.65606 * 119.99850 * 144.98775 * 10 8 5 12 12 O 1.42094 * 104.27817 * 308.92879 * 11 10 8 13 13 O 1.42106 * 104.27580 * 181.07110 * 11 10 8 14 14 C 1.81396 * 104.45103 * 65.00095 * 11 10 8 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 11 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00025 * 21 19 17 24 24 H 1.48498 * 109.46942 * 239.99938 * 21 19 17 25 25 H 1.09008 * 109.46860 * 300.00206 * 1 2 3 26 26 H 1.08992 * 109.47558 * 59.99787 * 1 2 3 27 27 H 1.09000 * 109.47067 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47092 * 240.00117 * 2 1 3 29 29 H 1.08996 * 109.47811 * 59.99997 * 3 2 1 30 30 H 1.08998 * 109.47338 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47066 * 299.99908 * 3 2 1 32 32 H 1.08995 * 109.47272 * 54.99792 * 4 2 1 33 33 H 1.09004 * 109.47309 * 294.99805 * 4 2 1 34 34 H 1.08997 * 117.49892 * 145.02067 * 7 5 4 35 35 H 1.08996 * 117.52196 * 359.97438 * 7 5 4 36 36 H 0.96995 * 119.99965 * 324.98952 * 10 8 5 37 37 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 38 38 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 39 39 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 40 40 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 41 41 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 42 42 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 43 43 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 4.0721 -0.0355 0.6420 7 6 4.1697 -2.2345 1.1153 8 6 4.2803 -1.4196 2.4055 9 1 3.6649 -1.7291 3.2503 10 7 5.5947 -0.8708 2.7484 11 16 6.0481 -0.7383 4.3357 12 8 4.9636 -0.0602 4.9545 13 8 7.3427 -0.1547 4.2827 14 6 6.1459 -2.4518 4.9231 15 6 6.5618 -2.4633 6.3954 16 6 6.6449 -3.9085 6.8906 17 6 7.0540 -3.9197 8.3410 18 1 7.2369 -2.9892 8.8577 19 6 7.1948 -5.1181 9.0083 20 7 6.9716 -6.2512 8.3793 21 14 7.7025 -5.1321 10.8059 22 1 7.8911 -3.7367 11.2779 23 1 6.6439 -5.7887 11.6142 24 1 8.9756 -5.8819 10.9548 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6054 -1.7197 1.2952 33 1 1.7517 -0.1582 2.1370 34 1 5.0749 -2.3623 0.5217 35 1 3.4817 -3.0798 1.1116 36 1 6.1993 -0.5851 2.0458 37 1 6.8832 -2.9965 4.3334 38 1 5.1715 -2.9285 4.8166 39 1 5.8249 -1.9184 6.9854 40 1 7.5364 -1.9867 6.5013 41 1 5.6705 -4.3855 6.7846 42 1 7.3820 -4.4530 6.3006 43 1 7.0703 -7.0943 8.8488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416530548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:20 Heat of formation + Delta-G solvation = -87.369415 kcal Electronic energy + Delta-G solvation = -20835.566746 eV Core-core repulsion = 17621.377593 eV Total energy + Delta-G solvation = -3214.189153 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.85691 -36.88657 -35.95439 -35.74815 -34.67559 -32.34472 -32.19238 -27.81498 -27.55794 -27.31016 -23.73413 -22.39159 -21.38476 -20.71974 -20.10995 -19.22766 -17.51999 -16.82397 -16.52025 -15.71205 -15.62147 -15.20467 -14.58948 -14.48429 -14.35743 -14.07911 -13.48838 -13.03462 -12.64292 -12.52038 -12.46411 -12.28707 -12.09164 -11.98216 -11.94716 -11.85977 -11.78137 -11.77252 -11.24121 -11.09980 -11.06129 -10.94034 -10.86474 -10.83830 -10.39970 -10.17852 -9.95955 -9.46386 -9.19657 -8.94316 -8.41755 -6.06412 -4.09367 0.44074 2.77130 3.29034 3.36581 3.41579 3.55232 3.93971 4.27054 4.42033 4.46504 4.51348 4.60858 4.73818 4.77364 4.81501 4.95940 5.12022 5.17765 5.25056 5.30405 5.35063 5.43620 5.51715 5.55711 5.61798 5.66672 5.74182 5.86720 5.87912 5.96253 6.00645 6.13143 6.16001 6.26110 6.44539 6.83888 6.87422 7.56616 7.66243 7.91823 8.32239 8.97186 9.55460 11.04863 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025904 B = 0.002890 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.638584 B = 9685.785299 C =10146.203748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.150 4.150 4 C -0.088 4.088 5 C -0.157 4.157 6 H 0.110 0.890 7 C -0.186 4.186 8 C 0.088 3.912 9 H 0.136 0.864 10 N -1.095 6.095 11 S 2.601 3.399 12 O -0.959 6.959 13 O -0.963 6.963 14 C -0.607 4.607 15 C -0.106 4.106 16 C 0.030 3.970 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.414 0.586 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 10.104 -19.307 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.126 4.126 5 C -0.177 4.177 6 H 0.128 0.872 7 C -0.226 4.226 8 C -0.021 4.021 9 H 0.154 0.846 10 N -0.848 5.848 11 S 2.697 3.303 12 O -0.949 6.949 13 O -0.954 6.954 14 C -0.739 4.739 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.248 0.752 37 H 0.148 0.852 38 H 0.145 0.855 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.809 10.719 -18.672 23.659 hybrid contribution 0.528 -0.806 0.410 1.047 sum -9.280 9.914 -18.262 22.757 Atomic orbital electron populations 1.21851 0.95273 1.01716 1.01763 1.21066 0.95506 0.96335 0.98297 1.21909 1.01228 0.95963 1.01651 1.21294 0.92043 1.00927 0.98320 1.22924 0.95756 0.97127 1.01914 0.87205 1.23626 1.03398 0.94848 1.00709 1.21449 0.85510 1.01570 0.93574 0.84624 1.55343 1.23631 1.79069 1.26774 1.05325 0.73903 0.78269 0.72759 1.93577 1.55063 1.71160 1.75123 1.93583 1.40803 1.75884 1.85082 1.30550 1.11094 1.22580 1.09646 1.21510 1.00869 1.04293 0.87911 1.19070 0.97679 0.88114 0.95958 1.21296 1.46456 0.92668 0.95938 0.92306 1.25024 0.95345 0.95608 0.98444 1.69964 1.49498 0.97383 1.36607 0.86500 0.78206 0.78216 0.84901 1.19597 1.20939 1.20941 0.92592 0.92832 0.92691 0.91197 0.92539 0.92472 0.93009 0.91424 0.91011 0.88359 0.87827 0.75222 0.85241 0.85488 0.91539 0.91564 0.96101 0.96107 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.64 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -1.06 9.01 37.16 0.33 -0.72 16 4 C -0.09 -0.67 4.96 -26.73 -0.13 -0.81 16 5 C -0.16 -1.29 5.45 -90.62 -0.49 -1.78 16 6 H 0.11 0.88 6.38 -51.93 -0.33 0.55 16 7 C -0.19 -1.45 10.10 -26.73 -0.27 -1.72 16 8 C 0.09 0.85 6.06 -67.93 -0.41 0.44 16 9 H 0.14 1.29 8.11 -51.92 -0.42 0.87 16 10 N -1.09 -11.76 5.93 -4.89 -0.03 -11.79 16 11 S 2.60 37.88 5.44 -107.50 -0.58 37.29 16 12 O -0.96 -16.81 17.82 -57.54 -1.03 -17.84 16 13 O -0.96 -16.88 18.08 -57.54 -1.04 -17.92 16 14 C -0.61 -9.23 6.07 37.16 0.23 -9.00 16 15 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 16 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 21 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 6.41 -51.93 -0.33 0.07 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.71 8.03 -51.93 -0.42 0.30 16 36 H 0.41 3.68 8.92 -34.48 -0.31 3.37 16 37 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.13 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -34.44 365.64 -10.49 -44.93 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.68 Total: -0.58 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -1.36 Total: -30.34 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.71 Total: -37.62 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -2.07 Total: -35.76 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 37.88 SS G_CDS: -0.58 Total: 37.29 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.44 -10.49 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.441 kcal (2) G-P(sol) polarization free energy of solvation -34.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds