Wall clock time and date at job start Tue Mar 31 2020 07:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47269 * 184.36163 * 3 2 1 5 5 H 1.08998 * 109.47410 * 303.74655 * 4 3 2 6 6 N 1.46501 * 109.46634 * 63.74673 * 4 3 2 7 7 S 1.65602 * 119.99832 * 235.10569 * 6 4 3 8 8 O 1.42098 * 104.28006 * 180.53888 * 7 6 4 9 9 O 1.42104 * 104.27524 * 308.39724 * 7 6 4 10 10 C 1.81402 * 104.44882 * 64.46777 * 7 6 4 11 11 C 1.53002 * 109.47118 * 184.79680 * 10 7 6 12 12 C 1.50689 * 109.47173 * 180.02562 * 11 10 7 13 13 H 1.08007 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00552 * 180.02562 * 12 11 10 15 15 N 1.31504 * 120.00589 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99297 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47093 * 90.00537 * 16 14 12 18 18 H 1.48505 * 109.46974 * 210.00017 * 16 14 12 19 19 H 1.48497 * 109.47558 * 330.00092 * 16 14 12 20 20 C 1.53000 * 109.47054 * 183.74164 * 4 3 2 21 21 C 1.53776 * 113.61668 * 273.40530 * 20 4 3 22 22 C 1.53775 * 87.08350 * 220.01834 * 21 20 4 23 23 C 1.53776 * 113.61412 * 175.90906 * 20 4 3 24 24 H 1.09003 * 109.46622 * 299.99530 * 1 2 3 25 25 H 1.09000 * 109.47114 * 60.00059 * 1 2 3 26 26 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47197 * 240.00511 * 2 1 3 28 28 H 1.09000 * 109.47114 * 119.99941 * 2 1 3 29 29 H 1.09007 * 109.47117 * 64.36296 * 3 2 1 30 30 H 1.09001 * 109.46922 * 304.36739 * 3 2 1 31 31 H 0.97000 * 120.00324 * 55.38677 * 6 4 3 32 32 H 1.09006 * 109.46839 * 304.79438 * 10 7 6 33 33 H 1.08997 * 109.46979 * 64.79486 * 10 7 6 34 34 H 1.09006 * 109.46685 * 300.00293 * 11 10 7 35 35 H 1.09005 * 109.47334 * 59.99762 * 11 10 7 36 36 H 0.97008 * 120.00351 * 179.97438 * 15 14 12 37 37 H 1.08999 * 112.84730 * 44.71385 * 20 4 3 38 38 H 1.09003 * 113.61512 * 334.57103 * 21 20 4 39 39 H 1.09003 * 113.61793 * 105.47109 * 21 20 4 40 40 H 1.09004 * 113.61836 * 270.88507 * 22 21 20 41 41 H 1.09004 * 113.69504 * 139.99180 * 22 21 20 42 42 H 1.09007 * 113.61456 * 254.53310 * 23 20 4 43 43 H 1.09002 * 113.61508 * 25.43092 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5661 1.4440 -0.1097 5 1 3.9893 0.8519 0.7018 6 7 3.9637 0.8650 -1.3954 7 16 5.0140 -0.4146 -1.4378 8 8 5.1736 -0.6913 -2.8225 9 8 6.1139 0.0084 -0.6437 10 6 4.1184 -1.7626 -0.6185 11 6 5.0369 -2.9793 -0.4872 12 6 4.2927 -4.0993 0.1929 13 1 3.2673 -3.9576 0.5011 14 6 4.9210 -5.3049 0.4226 15 7 4.2718 -6.2822 1.0166 16 14 6.6947 -5.5500 -0.1099 17 1 7.6030 -5.1493 0.9946 18 1 6.9191 -6.9802 -0.4409 19 1 6.9722 -4.7155 -1.3064 20 6 4.0828 2.8810 -0.0159 21 6 4.1117 3.6147 -1.3671 22 6 5.4551 4.2166 -0.9224 23 6 5.6170 2.9852 -0.0156 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7420 1.9333 0.9266 30 1 1.6142 1.9784 -0.8483 31 1 3.6150 1.2338 -2.2220 32 1 3.8012 -1.4383 0.3727 33 1 3.2434 -2.0301 -1.2107 34 1 5.3542 -3.3035 -1.4784 35 1 5.9120 -2.7118 0.1050 36 1 4.7138 -7.1306 1.1779 37 1 3.6063 3.4509 0.7818 38 1 4.1949 2.9471 -2.2247 39 1 3.3183 4.3535 -1.4799 40 1 5.3538 5.1528 -0.3734 41 1 6.1959 4.2719 -1.7201 42 1 6.0389 3.2157 0.9627 43 1 6.1118 2.1455 -0.5038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416555624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:47 Heat of formation + Delta-G solvation = -77.498947 kcal Electronic energy + Delta-G solvation = -22510.272553 eV Core-core repulsion = 19296.511416 eV Total energy + Delta-G solvation = -3213.761137 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61101 -36.67953 -36.00318 -35.55976 -33.96784 -33.03588 -31.47775 -29.12317 -26.06202 -25.84218 -25.41904 -22.22731 -21.47315 -20.80724 -19.48383 -18.80182 -17.65806 -16.95692 -16.35387 -15.84527 -15.42275 -15.21697 -14.83474 -14.41468 -14.25106 -13.81981 -13.62126 -12.96261 -12.84211 -12.77515 -12.35810 -12.12954 -11.99976 -11.87678 -11.66904 -11.61135 -11.50143 -11.30844 -11.29191 -11.15269 -10.87969 -10.67085 -10.56969 -10.41207 -10.37105 -10.16732 -10.11356 -9.70620 -9.43720 -9.09282 -8.66312 -6.16629 -4.17636 0.68114 3.03898 3.26345 3.33765 3.37921 4.12316 4.35759 4.38639 4.52344 4.64722 4.69936 4.83821 4.97061 4.99182 5.07230 5.14686 5.18285 5.36054 5.40412 5.52239 5.57189 5.59536 5.65634 5.67888 5.81912 5.84468 5.87348 5.89026 5.98734 6.08169 6.13669 6.24608 6.25057 6.34761 6.39617 6.60704 6.82130 6.92803 7.09861 7.54905 8.36585 8.84766 9.43343 10.95734 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.005354 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.182616 B = 5228.956576 C = 6197.069562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C -0.125 4.125 4 C 0.161 3.839 5 H 0.091 0.909 6 N -1.115 6.115 7 S 2.584 3.416 8 O -0.970 6.970 9 O -0.961 6.961 10 C -0.585 4.585 11 C -0.006 4.006 12 C -0.518 4.518 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.868 3.132 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.263 1.263 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.145 4.145 23 C -0.146 4.146 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.412 0.588 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 19.627 -2.430 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.165 4.165 4 C 0.053 3.947 5 H 0.109 0.891 6 N -0.873 5.873 7 S 2.682 3.318 8 O -0.961 6.961 9 O -0.951 6.951 10 C -0.718 4.718 11 C -0.045 4.045 12 C -0.557 4.557 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.187 1.187 20 C -0.140 4.140 21 C -0.171 4.171 22 C -0.183 4.183 23 C -0.183 4.183 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.440 19.409 -2.593 19.882 hybrid contribution 0.074 -0.339 -0.187 0.394 sum -3.365 19.070 -2.781 19.564 Atomic orbital electron populations 1.21741 0.95839 1.01893 1.01262 1.21763 0.96168 0.96549 1.03020 1.21977 0.94395 0.97547 1.02543 1.20676 0.94703 0.94559 0.84723 0.89056 1.55856 1.67609 1.50310 1.13537 1.05712 0.75400 0.75622 0.75099 1.93558 1.85601 1.85022 1.31900 1.93532 1.49821 1.79770 1.71986 1.30433 1.13319 1.14902 1.13108 1.19400 0.94537 0.92138 0.98461 1.20838 1.00536 0.95421 1.38869 0.90379 1.24972 0.97984 0.95759 0.94324 1.69876 1.37268 1.04240 1.41984 0.86944 0.85519 0.77938 0.80145 1.19671 1.20785 1.18702 1.22919 0.97243 0.95405 0.98445 1.22895 0.97505 0.99205 0.97545 1.22799 0.97756 0.97830 0.99879 1.23180 0.95640 0.99147 1.00340 0.92997 0.93050 0.92485 0.91406 0.91239 0.90943 0.91344 0.75273 0.85633 0.85446 0.95235 0.95261 0.92402 0.88629 0.89801 0.91912 0.90699 0.91801 0.91820 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.91 37.16 0.37 -1.09 16 2 C -0.14 -1.45 4.98 -26.73 -0.13 -1.59 16 3 C -0.13 -1.11 4.89 -26.73 -0.13 -1.24 16 4 C 0.16 1.68 2.17 -67.93 -0.15 1.53 16 5 H 0.09 1.02 7.48 -51.93 -0.39 0.63 16 6 N -1.12 -13.05 3.51 -4.89 -0.02 -13.07 16 7 S 2.58 42.38 5.31 -107.50 -0.57 41.81 16 8 O -0.97 -18.78 18.08 -57.54 -1.04 -19.82 16 9 O -0.96 -17.86 15.39 -57.54 -0.89 -18.75 16 10 C -0.58 -10.41 4.69 37.16 0.17 -10.23 16 11 C -0.01 -0.14 4.05 -27.89 -0.11 -0.26 16 12 C -0.52 -14.24 9.66 -34.45 -0.33 -14.57 16 13 H 0.08 2.25 7.99 -52.48 -0.42 1.83 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 15 N -0.90 -26.89 13.96 55.43 0.77 -26.11 16 16 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 20 C -0.12 -1.16 3.58 -89.81 -0.32 -1.49 16 21 C -0.13 -1.23 7.42 -25.92 -0.19 -1.42 16 22 C -0.15 -1.42 8.08 -25.92 -0.21 -1.63 16 23 C -0.15 -1.70 7.55 -25.92 -0.20 -1.90 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.76 5.78 -51.93 -0.30 0.46 16 28 H 0.07 0.79 7.50 -51.93 -0.39 0.40 16 29 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.41 4.06 7.33 -34.47 -0.25 3.80 16 32 H 0.13 2.00 6.77 -51.92 -0.35 1.65 16 33 H 0.13 2.09 7.26 -51.93 -0.38 1.72 16 34 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 35 H 0.03 0.68 7.57 -51.93 -0.39 0.28 16 36 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.10 0.79 8.13 -51.93 -0.42 0.37 16 38 H 0.08 0.79 5.95 -51.93 -0.31 0.48 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.10 1.51 5.37 -51.93 -0.28 1.23 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -33.02 342.84 -9.80 -42.82 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -7.23 Total: 3.10 kcal Atomic # 6 Polarization: -30.58 SS G_CDS: -1.33 Total: -31.91 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.76 Total: -39.18 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.93 Total: -38.57 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 42.38 SS G_CDS: -0.57 Total: 41.81 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.02 -9.80 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416555624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.675 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds