Wall clock time and date at job start Tue Mar 31 2020 07:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47269 * 184.36163 * 3 2 1 5 5 H 1.08998 * 109.47410 * 303.74655 * 4 3 2 6 6 N 1.46501 * 109.46634 * 63.74673 * 4 3 2 7 7 S 1.65602 * 119.99832 * 235.10569 * 6 4 3 8 8 O 1.42098 * 104.28006 * 180.53888 * 7 6 4 9 9 O 1.42104 * 104.27524 * 308.39724 * 7 6 4 10 10 C 1.81402 * 104.44882 * 64.46777 * 7 6 4 11 11 C 1.53002 * 109.47118 * 184.79680 * 10 7 6 12 12 C 1.50689 * 109.47173 * 180.02562 * 11 10 7 13 13 H 1.08007 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00552 * 180.02562 * 12 11 10 15 15 N 1.31504 * 120.00589 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99297 * 359.97438 * 14 12 11 17 17 H 1.48501 * 109.47093 * 90.00537 * 16 14 12 18 18 H 1.48505 * 109.46974 * 210.00017 * 16 14 12 19 19 H 1.48497 * 109.47558 * 330.00092 * 16 14 12 20 20 C 1.53000 * 109.47054 * 183.74164 * 4 3 2 21 21 C 1.53776 * 113.61668 * 273.40530 * 20 4 3 22 22 C 1.53775 * 87.08350 * 220.01834 * 21 20 4 23 23 C 1.53776 * 113.61412 * 175.90906 * 20 4 3 24 24 H 1.09003 * 109.46622 * 299.99530 * 1 2 3 25 25 H 1.09000 * 109.47114 * 60.00059 * 1 2 3 26 26 H 1.09003 * 109.46905 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47197 * 240.00511 * 2 1 3 28 28 H 1.09000 * 109.47114 * 119.99941 * 2 1 3 29 29 H 1.09007 * 109.47117 * 64.36296 * 3 2 1 30 30 H 1.09001 * 109.46922 * 304.36739 * 3 2 1 31 31 H 0.97000 * 120.00324 * 55.38677 * 6 4 3 32 32 H 1.09006 * 109.46839 * 304.79438 * 10 7 6 33 33 H 1.08997 * 109.46979 * 64.79486 * 10 7 6 34 34 H 1.09006 * 109.46685 * 300.00293 * 11 10 7 35 35 H 1.09005 * 109.47334 * 59.99762 * 11 10 7 36 36 H 0.97008 * 120.00351 * 179.97438 * 15 14 12 37 37 H 1.08999 * 112.84730 * 44.71385 * 20 4 3 38 38 H 1.09003 * 113.61512 * 334.57103 * 21 20 4 39 39 H 1.09003 * 113.61793 * 105.47109 * 21 20 4 40 40 H 1.09004 * 113.61836 * 270.88507 * 22 21 20 41 41 H 1.09004 * 113.69504 * 139.99180 * 22 21 20 42 42 H 1.09007 * 113.61456 * 254.53310 * 23 20 4 43 43 H 1.09002 * 113.61508 * 25.43092 * 23 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5661 1.4440 -0.1097 5 1 3.9893 0.8519 0.7018 6 7 3.9637 0.8650 -1.3954 7 16 5.0140 -0.4146 -1.4378 8 8 5.1736 -0.6913 -2.8225 9 8 6.1139 0.0084 -0.6437 10 6 4.1184 -1.7626 -0.6185 11 6 5.0369 -2.9793 -0.4872 12 6 4.2927 -4.0993 0.1929 13 1 3.2673 -3.9576 0.5011 14 6 4.9210 -5.3049 0.4226 15 7 4.2718 -6.2822 1.0166 16 14 6.6947 -5.5500 -0.1099 17 1 7.6030 -5.1493 0.9946 18 1 6.9191 -6.9802 -0.4409 19 1 6.9722 -4.7155 -1.3064 20 6 4.0828 2.8810 -0.0159 21 6 4.1117 3.6147 -1.3671 22 6 5.4551 4.2166 -0.9224 23 6 5.6170 2.9852 -0.0156 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7420 1.9333 0.9266 30 1 1.6142 1.9784 -0.8483 31 1 3.6150 1.2338 -2.2220 32 1 3.8012 -1.4383 0.3727 33 1 3.2434 -2.0301 -1.2107 34 1 5.3542 -3.3035 -1.4784 35 1 5.9120 -2.7118 0.1050 36 1 4.7138 -7.1306 1.1779 37 1 3.6063 3.4509 0.7818 38 1 4.1949 2.9471 -2.2247 39 1 3.3183 4.3535 -1.4799 40 1 5.3538 5.1528 -0.3734 41 1 6.1959 4.2719 -1.7201 42 1 6.0389 3.2157 0.9627 43 1 6.1118 2.1455 -0.5038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416555624.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:46 Heat of formation + Delta-G solvation = -99.629290 kcal Electronic energy + Delta-G solvation = -22511.232197 eV Core-core repulsion = 19296.511416 eV Total energy + Delta-G solvation = -3214.720781 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42670 -38.11696 -37.00999 -36.84002 -35.87517 -33.98910 -33.42895 -29.99137 -27.91589 -26.61727 -26.22194 -23.34035 -22.93079 -21.74520 -20.60491 -19.77326 -19.36969 -18.49133 -17.50496 -17.05334 -16.51249 -16.41073 -16.25856 -15.77014 -15.40228 -15.07017 -14.81249 -14.64696 -13.81731 -13.78798 -13.72586 -13.39628 -13.16891 -13.08206 -13.02712 -12.88928 -12.78349 -12.67096 -12.52071 -12.25477 -12.01862 -11.96716 -11.86484 -11.70480 -11.43120 -11.38200 -11.20115 -11.07371 -10.92315 -10.83829 -10.14730 -8.35960 -6.40993 -0.68158 1.31120 1.33204 1.42815 1.83984 2.29328 2.76693 2.98172 3.25986 3.58768 3.83018 3.86519 3.93431 4.02485 4.07790 4.22376 4.25181 4.28236 4.37095 4.55363 4.62496 4.65667 4.81464 4.93763 4.97283 5.02540 5.06421 5.07117 5.11349 5.13551 5.16441 5.18986 5.24140 5.38078 5.46762 5.47877 5.53534 5.58787 5.78735 6.18065 6.20966 6.65018 7.23250 8.79567 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018187 B = 0.005354 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.182616 B = 5228.956576 C = 6197.069562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C -0.115 4.115 4 C 0.153 3.847 5 H 0.083 0.917 6 N -1.096 6.096 7 S 2.614 3.386 8 O -0.998 6.998 9 O -0.981 6.981 10 C -0.590 4.590 11 C -0.015 4.015 12 C -0.523 4.523 13 H 0.051 0.949 14 C 0.015 3.985 15 N -0.940 5.940 16 Si 0.922 3.078 17 H -0.261 1.261 18 H -0.274 1.274 19 H -0.252 1.252 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.164 4.164 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.425 0.575 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.027 0.973 35 H 0.032 0.968 36 H 0.269 0.731 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 22.113 -2.853 22.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.154 4.154 4 C 0.046 3.954 5 H 0.101 0.899 6 N -0.859 5.859 7 S 2.709 3.291 8 O -0.989 6.989 9 O -0.971 6.971 10 C -0.721 4.721 11 C -0.054 4.054 12 C -0.562 4.562 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.579 5.579 16 Si 0.745 3.255 17 H -0.185 1.185 18 H -0.200 1.200 19 H -0.175 1.175 20 C -0.131 4.131 21 C -0.168 4.168 22 C -0.180 4.180 23 C -0.201 4.201 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.263 0.737 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.692 21.892 -3.023 22.406 hybrid contribution 0.073 -1.044 -0.012 1.046 sum -3.619 20.849 -3.036 21.377 Atomic orbital electron populations 1.21731 0.95151 1.01328 1.02426 1.21819 0.96894 0.97717 1.01889 1.21917 0.92678 0.96493 1.04297 1.20920 0.96037 0.95015 0.83419 0.89923 1.55417 1.66995 1.48441 1.15030 1.04606 0.75195 0.75522 0.73737 1.93514 1.86227 1.85763 1.33369 1.93517 1.51168 1.79993 1.72387 1.30441 1.12987 1.13906 1.14804 1.19349 0.95307 0.93103 0.97648 1.21152 0.99779 0.96837 1.38422 0.93111 1.25824 1.02273 0.95651 0.94562 1.70001 1.39227 1.04959 1.43755 0.86073 0.80601 0.78407 0.80436 1.18528 1.19954 1.17546 1.22941 0.95621 0.94880 0.99667 1.22896 0.97706 0.99385 0.96862 1.22827 0.98047 0.97737 0.99394 1.23212 0.97150 0.99249 1.00513 0.91894 0.91816 0.93978 0.92388 0.92672 0.89027 0.89633 0.73694 0.84202 0.84437 0.95480 0.95006 0.92171 0.86266 0.90345 0.89754 0.88999 0.92478 0.91907 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.91 71.98 0.71 -1.93 16 2 C -0.15 -2.85 4.98 30.60 0.15 -2.70 16 3 C -0.11 -1.67 4.89 30.59 0.15 -1.52 16 4 C 0.15 2.83 2.17 44.99 0.10 2.93 16 5 H 0.08 1.71 7.48 -2.39 -0.02 1.69 16 6 N -1.10 -23.75 3.51 -169.39 -0.59 -24.35 16 7 S 2.61 83.79 5.31 -56.49 -0.30 83.49 16 8 O -1.00 -37.89 18.08 -127.65 -2.31 -40.20 16 9 O -0.98 -36.00 15.39 -127.65 -1.97 -37.97 16 10 C -0.59 -20.90 4.69 71.98 0.34 -20.57 16 11 C -0.02 -0.70 4.05 29.85 0.12 -0.58 16 12 C -0.52 -29.36 9.66 25.60 0.25 -29.11 16 13 H 0.05 3.04 7.99 -2.91 -0.02 3.01 16 14 C 0.02 0.89 5.47 84.66 0.46 1.36 16 15 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 16 Si 0.92 44.00 27.47 68.60 1.88 45.88 16 17 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.25 -11.47 6.54 99.48 0.65 -10.82 16 20 C -0.11 -1.82 3.58 -10.27 -0.04 -1.86 16 21 C -0.13 -1.97 7.42 31.12 0.23 -1.73 16 22 C -0.14 -2.46 8.08 31.12 0.25 -2.21 16 23 C -0.16 -3.57 7.55 31.12 0.23 -3.34 16 24 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 1.23 5.78 -2.39 -0.01 1.21 16 28 H 0.05 1.22 7.50 -2.39 -0.02 1.20 16 29 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.42 7.38 7.33 -96.75 -0.71 6.67 16 32 H 0.14 4.46 6.77 -2.39 -0.02 4.44 16 33 H 0.14 4.52 7.26 -2.39 -0.02 4.50 16 34 H 0.03 1.27 7.20 -2.38 -0.02 1.25 16 35 H 0.03 1.46 7.57 -2.38 -0.02 1.44 16 36 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 37 H 0.12 1.45 8.13 -2.39 -0.02 1.43 16 38 H 0.08 1.26 5.95 -2.39 -0.01 1.24 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.08 2.14 5.37 -2.39 -0.01 2.12 16 Total: -1.00 -71.81 342.84 0.20 -71.61 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.22 Total: 20.16 kcal Atomic # 6 Polarization: -64.22 SS G_CDS: 2.96 Total: -61.26 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -0.30 Total: -81.71 kcal Atomic # 8 Polarization: -73.90 SS G_CDS: -4.27 Total: -78.17 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 1.88 Total: 45.88 kcal Atomic # 16 Polarization: 83.79 SS G_CDS: -0.30 Total: 83.49 kcal Total: -71.81 0.20 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416555624.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -71.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds