Wall clock time and date at job start Tue Mar 31 2020 07:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46985 * 2 1 4 4 C 1.52995 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47435 * 304.99895 * 4 3 2 6 6 C 1.52998 * 109.47157 * 64.99901 * 4 3 2 7 7 C 1.53001 * 109.47536 * 184.99952 * 4 3 2 8 8 S 1.81396 * 109.47301 * 174.99934 * 7 4 3 9 9 O 1.42102 * 110.54578 * 68.37978 * 8 7 4 10 10 O 1.42097 * 110.54319 * 291.62333 * 8 7 4 11 11 N 1.65609 * 104.44756 * 180.02562 * 8 7 4 12 12 C 1.46495 * 120.00046 * 65.00065 * 11 8 7 13 13 C 1.53004 * 109.47052 * 159.13246 * 12 11 8 14 14 C 1.50700 * 115.55097 * 294.33149 * 13 12 11 15 15 H 1.08000 * 119.99724 * 95.26588 * 14 13 12 16 16 C 1.37872 * 119.99989 * 274.99073 * 14 13 12 17 17 N 1.31519 * 120.00156 * 355.56043 * 16 14 13 18 18 Si 1.86797 * 119.99989 * 175.55686 * 16 14 13 19 19 H 1.48501 * 109.47159 * 90.00074 * 18 16 14 20 20 H 1.48506 * 109.47496 * 209.99881 * 18 16 14 21 21 H 1.48498 * 109.47391 * 330.00294 * 18 16 14 22 22 C 1.53001 * 117.49742 * 80.00346 * 13 12 11 23 23 C 1.53005 * 117.49347 * 148.66115 * 13 12 11 24 24 H 1.09003 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47322 * 300.00053 * 1 2 3 26 26 H 1.08999 * 109.46678 * 60.00182 * 1 2 3 27 27 H 1.08992 * 109.47322 * 239.99947 * 2 1 3 28 28 H 1.08999 * 109.46678 * 119.99818 * 2 1 3 29 29 H 1.09005 * 109.47358 * 59.99962 * 3 2 1 30 30 H 1.08998 * 109.47325 * 300.00010 * 3 2 1 31 31 H 1.09000 * 109.47313 * 180.02562 * 6 4 3 32 32 H 1.08996 * 109.47601 * 299.99871 * 6 4 3 33 33 H 1.08995 * 109.47340 * 60.00278 * 6 4 3 34 34 H 1.09007 * 109.46976 * 55.00089 * 7 4 3 35 35 H 1.08998 * 109.46880 * 295.00568 * 7 4 3 36 36 H 0.97000 * 119.99741 * 244.99620 * 11 8 7 37 37 H 1.09003 * 109.46977 * 39.13447 * 12 11 8 38 38 H 1.09002 * 109.47371 * 279.13756 * 12 11 8 39 39 H 0.96996 * 120.00045 * 185.00274 * 17 16 14 40 40 H 1.08991 * 117.49791 * 214.99978 * 22 13 12 41 41 H 1.09007 * 117.49553 * 0.02562 * 22 13 12 42 42 H 1.08993 * 117.50038 * 359.97438 * 23 13 12 43 43 H 1.08998 * 117.48996 * 144.97537 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0805 0.8327 -1.3064 7 6 4.0800 2.8795 0.1264 8 16 5.8877 2.8687 0.2758 9 8 6.4863 2.4477 -0.9423 10 8 6.2819 2.3048 1.5191 11 7 6.3013 4.4672 0.4036 12 6 5.8720 5.2440 1.5691 13 6 6.7707 6.4727 1.7222 14 6 8.2128 6.1862 2.0528 15 1 8.9477 6.1335 1.2632 16 6 8.5950 5.9969 3.3639 17 7 7.7196 6.1523 4.3331 18 14 10.3561 5.5194 3.7638 19 1 11.1682 6.7464 3.9646 20 1 10.3783 4.7028 5.0040 21 1 10.9221 4.7296 2.6409 22 6 6.4773 7.6785 0.8273 23 6 6.1459 7.7347 2.3207 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1705 0.8323 -1.3057 32 1 3.7173 -0.1911 -1.3960 33 1 3.7176 1.4220 -2.1484 34 1 3.6450 3.3433 1.0118 35 1 3.7919 3.4460 -0.7592 36 1 6.8279 4.8891 -0.2933 37 1 5.9453 4.6264 2.4643 38 1 4.8391 5.5640 1.4321 39 1 8.0043 6.0906 5.2583 40 1 7.3272 8.2645 0.4777 41 1 5.6436 7.5965 0.1297 42 1 5.0947 7.6896 2.6049 43 1 6.7779 8.3573 2.9539 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429975450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:35 Heat of formation + Delta-G solvation = -77.329946 kcal Electronic energy + Delta-G solvation = -21855.814523 eV Core-core repulsion = 18642.060714 eV Total energy + Delta-G solvation = -3213.753809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -37.48631 -37.08108 -36.59032 -35.48108 -33.28233 -33.03612 -31.87893 -27.69846 -26.83165 -25.95460 -24.83407 -22.15280 -21.14803 -20.39658 -19.35086 -18.74641 -17.21823 -16.61755 -15.96606 -15.68514 -15.30085 -14.78858 -14.52083 -14.28193 -14.00596 -13.73804 -13.49309 -13.16641 -12.85237 -12.55247 -12.25403 -12.12077 -11.87203 -11.81528 -11.69792 -11.52122 -11.30811 -11.25734 -11.13658 -10.92351 -10.90644 -10.87219 -10.67202 -10.47247 -10.21899 -10.11710 -9.51484 -9.13149 -8.58853 -8.41897 -8.13890 -6.01484 -4.08605 0.66740 3.25372 3.32979 3.41332 3.45550 4.10191 4.38733 4.43750 4.48857 4.63711 4.73092 4.95115 5.00549 5.15756 5.26507 5.28158 5.30940 5.40954 5.46936 5.59292 5.63635 5.67237 5.75974 5.86923 5.87891 5.95810 6.00443 6.15655 6.21119 6.23127 6.26090 6.34024 6.48938 6.69399 7.02440 7.08149 7.39376 7.57019 7.72864 7.89633 8.40332 8.91612 9.58026 11.06278 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.004184 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.900452 B = 6689.787251 C = 7003.404272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.080 4.080 5 H 0.083 0.917 6 C -0.181 4.181 7 C -0.633 4.633 8 S 2.608 3.392 9 O -0.970 6.970 10 O -0.952 6.952 11 N -1.098 6.098 12 C 0.156 3.844 13 C 0.035 3.965 14 C -0.493 4.493 15 H 0.060 0.940 16 C 0.072 3.928 17 N -0.878 5.878 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.212 4.212 23 C -0.145 4.145 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.415 0.585 37 H 0.082 0.918 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.915 -7.606 -8.680 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.146 4.146 4 C -0.100 4.100 5 H 0.102 0.898 6 C -0.238 4.238 7 C -0.761 4.761 8 S 2.699 3.301 9 O -0.960 6.960 10 O -0.942 6.942 11 N -0.858 5.858 12 C 0.030 3.970 13 C 0.033 3.967 14 C -0.531 4.531 15 H 0.078 0.922 16 C -0.131 4.131 17 N -0.515 5.515 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.249 4.249 23 C -0.184 4.184 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.249 0.751 37 H 0.100 0.900 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.469 -8.503 -8.308 17.227 hybrid contribution 0.445 0.498 0.089 0.674 sum -12.023 -8.005 -8.219 16.619 Atomic orbital electron populations 1.21773 0.95902 1.01508 1.01803 1.21634 0.95810 0.96921 1.02419 1.21625 0.93372 0.97014 1.02550 1.20870 0.97529 0.91952 0.99624 0.89826 1.22343 1.03072 1.01662 0.96718 1.30784 1.28905 1.04926 1.11478 1.04970 0.77118 0.73686 0.74306 1.93536 1.74464 1.80781 1.47203 1.93615 1.79437 1.76946 1.44184 1.55162 1.68254 1.30190 1.32163 1.20984 0.94546 0.95098 0.86397 1.18930 0.95118 0.84639 0.98051 1.20345 0.91043 1.49320 0.92357 0.92221 1.24956 0.97222 0.94486 0.96448 1.69963 1.33483 1.48694 0.99340 0.86636 0.84931 0.78569 0.78205 1.20791 1.21045 1.19669 1.23027 1.01513 1.06855 0.93551 1.22499 0.98498 1.04064 0.93327 0.92843 0.92718 0.92823 0.91574 0.91780 0.91515 0.91582 0.90608 0.91318 0.91626 0.85066 0.85178 0.75060 0.90013 0.95013 0.92950 0.90368 0.91705 0.91896 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.08 5.69 -26.73 -0.15 -1.23 16 3 C -0.11 -0.99 4.68 -26.73 -0.13 -1.12 16 4 C -0.08 -0.90 2.39 -90.62 -0.22 -1.11 16 5 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.18 -1.98 8.64 37.16 0.32 -1.66 16 7 C -0.63 -7.63 5.51 37.16 0.20 -7.42 16 8 S 2.61 44.06 5.11 -107.50 -0.55 43.51 16 9 O -0.97 -17.69 15.83 -57.54 -0.91 -18.60 16 10 O -0.95 -20.24 17.43 -57.54 -1.00 -21.25 16 11 N -1.10 -20.08 5.77 -10.61 -0.06 -20.14 16 12 C 0.16 3.21 6.00 -4.04 -0.02 3.18 16 13 C 0.03 0.80 1.49 -155.66 -0.23 0.57 16 14 C -0.49 -13.16 8.75 -34.44 -0.30 -13.46 16 15 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 16 C 0.07 1.99 5.43 -17.82 -0.10 1.89 16 17 N -0.88 -24.59 12.66 55.43 0.70 -23.89 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.21 -4.29 9.96 -26.69 -0.27 -4.56 16 23 C -0.15 -3.22 9.15 -26.69 -0.24 -3.47 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.52 6.57 -51.93 -0.34 0.17 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.98 5.61 -51.93 -0.29 0.69 16 32 H 0.07 0.62 6.57 -51.93 -0.34 0.28 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.13 1.45 8.14 -51.92 -0.42 1.03 16 35 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.41 7.29 8.66 -34.48 -0.30 6.99 16 37 H 0.08 1.91 7.59 -51.93 -0.39 1.51 16 38 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 39 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 2.10 8.14 -51.93 -0.42 1.67 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -31.79 358.45 -9.76 -41.54 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.55 Total: 5.97 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -0.76 Total: -29.13 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.64 Total: -44.03 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.91 Total: -39.85 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 44.06 SS G_CDS: -0.55 Total: 43.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.79 -9.76 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429975450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.786 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds