Wall clock time and date at job start Tue Mar 31 2020 07:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 C 1.52998 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47004 * 55.00323 * 4 3 2 6 6 C 1.52997 * 109.47268 * 294.99891 * 4 3 2 7 7 C 1.53007 * 109.46992 * 174.99767 * 4 3 2 8 8 S 1.81395 * 109.47060 * 184.99972 * 7 4 3 9 9 O 1.42100 * 110.54438 * 68.37798 * 8 7 4 10 10 O 1.42098 * 110.54518 * 291.62827 * 8 7 4 11 11 N 1.65607 * 104.44956 * 180.02562 * 8 7 4 12 12 C 1.46497 * 119.99742 * 64.86115 * 11 8 7 13 13 C 1.52994 * 109.46983 * 159.85383 * 12 11 8 14 14 C 1.50702 * 115.55069 * 65.63316 * 13 12 11 15 15 H 1.07995 * 119.99759 * 264.62300 * 14 13 12 16 16 C 1.37879 * 119.99834 * 84.62569 * 14 13 12 17 17 N 1.31516 * 119.99648 * 184.32352 * 16 14 13 18 18 Si 1.86796 * 120.00304 * 4.31670 * 16 14 13 19 19 H 1.48504 * 109.47068 * 94.15325 * 18 16 14 20 20 H 1.48498 * 109.47564 * 214.15217 * 18 16 14 21 21 H 1.48501 * 109.47222 * 334.15766 * 18 16 14 22 22 C 1.53003 * 117.49922 * 279.95994 * 13 12 11 23 23 C 1.53005 * 117.49934 * 211.30101 * 13 12 11 24 24 H 1.09000 * 109.47229 * 59.99355 * 1 2 3 25 25 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46858 * 299.99980 * 1 2 3 27 27 H 1.09003 * 109.46503 * 240.00343 * 2 1 3 28 28 H 1.08993 * 109.46908 * 120.00384 * 2 1 3 29 29 H 1.08999 * 109.47453 * 60.00051 * 3 2 1 30 30 H 1.09000 * 109.47592 * 300.00422 * 3 2 1 31 31 H 1.08998 * 109.47461 * 300.00152 * 6 4 3 32 32 H 1.09001 * 109.46832 * 60.00264 * 6 4 3 33 33 H 1.09004 * 109.46902 * 179.97438 * 6 4 3 34 34 H 1.09004 * 109.46742 * 65.00683 * 7 4 3 35 35 H 1.08991 * 109.47191 * 305.00297 * 7 4 3 36 36 H 0.96993 * 120.00117 * 245.13450 * 11 8 7 37 37 H 1.08996 * 109.47080 * 279.85448 * 12 11 8 38 38 H 1.08996 * 109.47368 * 39.85422 * 12 11 8 39 39 H 0.97006 * 119.99998 * 179.97438 * 17 16 14 40 40 H 1.08995 * 117.49575 * 0.02562 * 22 13 12 41 41 H 1.09005 * 117.49508 * 145.01921 * 22 13 12 42 42 H 1.09001 * 117.49955 * 214.98295 * 23 13 12 43 43 H 1.09001 * 117.49657 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9329 0.8531 -0.8427 6 6 4.0806 0.8326 1.3064 7 6 4.0800 2.8795 -0.1264 8 16 5.8878 2.8686 -0.2759 9 8 6.2820 2.3046 -1.5192 10 8 6.4863 2.4475 0.9421 11 7 6.3016 4.4671 -0.4023 12 6 6.0595 5.3774 0.7197 13 6 6.9465 6.6152 0.5727 14 6 6.6441 7.4944 -0.6134 15 1 7.1998 7.3727 -1.5313 16 6 5.6579 8.4541 -0.5265 17 7 5.3355 9.1633 -1.5860 18 14 4.7797 8.7468 1.0960 19 1 5.4497 9.8506 1.8294 20 1 3.3649 9.1138 0.8340 21 1 4.8265 7.5086 1.9146 22 6 8.4086 6.4923 1.0064 23 6 7.4233 7.2992 1.8557 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 3.7176 1.4219 2.1485 32 1 3.7172 -0.1912 1.3959 33 1 5.1706 0.8322 1.3057 34 1 3.7921 3.4460 0.7592 35 1 3.6450 3.3432 -1.0117 36 1 6.7006 4.8015 -1.2207 37 1 5.0122 5.6791 0.7233 38 1 6.2948 4.8709 1.6558 39 1 4.6414 9.8383 -1.5251 40 1 8.7386 5.5293 1.3961 41 1 9.1517 7.0475 0.4340 42 1 7.5185 8.3849 1.8417 43 1 7.1046 6.8674 2.8044 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429975451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:38 Heat of formation + Delta-G solvation = -74.956011 kcal Electronic energy + Delta-G solvation = -21955.146338 eV Core-core repulsion = 18741.495470 eV Total energy + Delta-G solvation = -3213.650867 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -37.51519 -37.45606 -36.75586 -35.66560 -33.46072 -33.05530 -32.16609 -27.73091 -26.85107 -26.34744 -24.91611 -22.17932 -21.67387 -20.43819 -19.31174 -18.85941 -17.24557 -16.71476 -16.28736 -15.77086 -15.48830 -15.01020 -14.63684 -14.34321 -14.21977 -13.77750 -13.56552 -12.94640 -12.88924 -12.66218 -12.60116 -12.51783 -12.13362 -11.84795 -11.77472 -11.74201 -11.68057 -11.36488 -11.23560 -11.14209 -10.96365 -10.90347 -10.68480 -10.51348 -10.24204 -10.13557 -9.59583 -9.26818 -8.88951 -8.56555 -8.53156 -6.19419 -4.23414 0.55517 3.08674 3.21757 3.32278 3.35324 3.96435 4.34011 4.34926 4.40332 4.60758 4.66328 4.86183 4.92097 4.99526 5.09162 5.13029 5.25241 5.38877 5.46115 5.55148 5.59565 5.62688 5.66676 5.73818 5.85918 5.94529 5.95172 5.98072 6.00016 6.05950 6.14753 6.18717 6.20621 6.46122 6.62606 6.70988 7.07375 7.08518 7.64300 7.65667 8.40781 8.83404 9.43450 10.91900 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017672 B = 0.004802 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.076300 B = 5829.166469 C = 6578.745919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C -0.108 4.108 4 C -0.079 4.079 5 H 0.083 0.917 6 C -0.182 4.182 7 C -0.632 4.632 8 S 2.609 3.391 9 O -0.968 6.968 10 O -0.961 6.961 11 N -1.098 6.098 12 C 0.151 3.849 13 C -0.007 4.007 14 C -0.489 4.489 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.894 5.894 18 Si 0.876 3.124 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.255 1.255 22 C -0.176 4.176 23 C -0.196 4.196 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.132 0.868 35 H 0.135 0.865 36 H 0.424 0.576 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 -14.728 5.239 17.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.147 4.147 4 C -0.099 4.099 5 H 0.101 0.899 6 C -0.239 4.239 7 C -0.761 4.761 8 S 2.701 3.299 9 O -0.958 6.958 10 O -0.951 6.951 11 N -0.859 5.859 12 C 0.025 3.975 13 C -0.010 4.010 14 C -0.526 4.526 15 H 0.097 0.903 16 C -0.124 4.124 17 N -0.531 5.531 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.179 1.179 22 C -0.214 4.214 23 C -0.234 4.234 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.153 0.847 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.599 -15.364 5.321 17.548 hybrid contribution -1.094 1.061 0.499 1.604 sum -7.693 -14.303 5.821 17.252 Atomic orbital electron populations 1.21776 0.95877 1.01494 1.01882 1.21629 0.95850 0.96877 1.02337 1.21635 0.93287 0.97027 1.02740 1.20874 0.97666 0.91805 0.99555 0.89915 1.22355 1.02998 1.01713 0.96805 1.30765 1.28257 1.05029 1.12039 1.04865 0.77403 0.73359 0.74231 1.93572 1.81056 1.76998 1.44203 1.93554 1.73418 1.80726 1.47419 1.55185 1.77576 1.27254 1.25921 1.21058 0.99467 0.90688 0.86316 1.19492 0.92212 0.94492 0.94767 1.20241 1.19593 1.15745 0.97063 0.90285 1.24988 0.95964 0.95256 0.96225 1.69905 1.31036 1.23314 1.28857 0.86892 0.78408 0.79590 0.84707 1.20447 1.22093 1.17934 1.22842 0.94271 1.00047 1.04204 1.23010 1.06575 0.99009 0.94847 0.92717 0.92846 0.92759 0.91854 0.91577 0.91454 0.91456 0.91513 0.91287 0.90636 0.84999 0.84650 0.73917 0.92551 0.92372 0.92507 0.90576 0.89486 0.89342 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.06 5.69 -26.73 -0.15 -1.21 16 3 C -0.11 -1.02 4.68 -26.73 -0.13 -1.14 16 4 C -0.08 -0.86 2.39 -90.62 -0.22 -1.08 16 5 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 6 C -0.18 -1.95 8.64 37.16 0.32 -1.63 16 7 C -0.63 -7.68 5.51 37.16 0.20 -7.48 16 8 S 2.61 40.86 5.11 -107.50 -0.55 40.31 16 9 O -0.97 -17.61 18.08 -57.54 -1.04 -18.65 16 10 O -0.96 -16.83 15.19 -57.54 -0.87 -17.71 16 11 N -1.10 -19.38 5.83 -10.62 -0.06 -19.45 16 12 C 0.15 2.88 5.59 -4.05 -0.02 2.86 16 13 C -0.01 -0.16 0.89 -155.66 -0.14 -0.29 16 14 C -0.49 -12.63 9.05 -34.44 -0.31 -12.95 16 15 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 16 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 18 Si 0.88 20.23 24.94 -169.99 -4.24 15.99 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.26 -5.40 5.69 56.52 0.32 -5.08 16 22 C -0.18 -3.49 9.96 -26.69 -0.27 -3.75 16 23 C -0.20 -3.96 7.35 -26.69 -0.20 -4.15 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 33 H 0.07 0.93 5.61 -51.93 -0.29 0.64 16 34 H 0.13 1.46 8.14 -51.92 -0.42 1.03 16 35 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.42 7.77 8.35 -34.48 -0.29 7.48 16 37 H 0.06 1.05 7.01 -51.93 -0.36 0.68 16 38 H 0.06 1.02 7.56 -51.93 -0.39 0.63 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 42 H 0.09 1.86 7.17 -51.93 -0.37 1.48 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 349.18 15.07 5.26 5.26 Total: -1.00 -31.13 349.18 -8.88 -40.02 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -7.52 Total: 8.85 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: -0.63 Total: -29.60 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.71 Total: -44.48 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -1.91 Total: -36.35 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.24 Total: 15.99 kcal Atomic # 16 Polarization: 40.86 SS G_CDS: -0.55 Total: 40.31 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.13 -8.88 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429975451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.938 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds