Wall clock time and date at job start Tue Mar 31 2020 06:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47278 * 2 1 4 4 C 1.53007 * 109.47150 * 302.39479 * 3 2 1 5 5 C 1.53002 * 109.46852 * 293.93470 * 4 3 2 6 6 C 1.52999 * 109.47179 * 62.39254 * 3 2 1 7 7 S 1.81406 * 109.47030 * 65.00157 * 6 3 2 8 8 O 1.42099 * 110.53884 * 68.37447 * 7 6 3 9 9 O 1.42104 * 110.53834 * 291.62489 * 7 6 3 10 10 N 1.65593 * 104.44897 * 179.97438 * 7 6 3 11 11 C 1.46509 * 119.99790 * 65.00160 * 10 7 6 12 12 C 1.53007 * 109.46890 * 159.06327 * 11 10 7 13 13 C 1.50697 * 115.54765 * 294.33666 * 12 11 10 14 14 H 1.08004 * 119.99884 * 95.38632 * 13 12 11 15 15 C 1.37872 * 120.00159 * 275.10653 * 13 12 11 16 16 N 1.31511 * 119.99996 * 355.57615 * 15 13 12 17 17 Si 1.86806 * 119.99987 * 175.57331 * 15 13 12 18 18 H 1.48494 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46808 * 120.00331 * 17 15 13 20 20 H 1.48501 * 109.46831 * 240.00200 * 17 15 13 21 21 C 1.52993 * 117.49661 * 80.00983 * 12 11 10 22 22 C 1.52998 * 117.49749 * 148.66933 * 12 11 10 23 23 H 1.09000 * 109.46686 * 305.28132 * 1 2 3 24 24 H 1.09002 * 109.47272 * 65.28063 * 1 2 3 25 25 H 1.09002 * 109.47088 * 185.28298 * 1 2 3 26 26 H 1.09005 * 109.46918 * 240.00268 * 2 1 3 27 27 H 1.08996 * 109.47355 * 120.00167 * 2 1 3 28 28 H 1.09003 * 109.47167 * 182.39797 * 3 2 1 29 29 H 1.09000 * 109.46986 * 53.93625 * 4 3 2 30 30 H 1.08997 * 109.47378 * 173.93574 * 4 3 2 31 31 H 1.09004 * 109.47311 * 65.54952 * 5 4 3 32 32 H 1.09003 * 109.46612 * 185.54578 * 5 4 3 33 33 H 1.08991 * 109.47336 * 305.54591 * 5 4 3 34 34 H 1.09003 * 109.46924 * 305.00060 * 6 3 2 35 35 H 1.08995 * 109.47079 * 184.99897 * 6 3 2 36 36 H 0.96995 * 120.00240 * 244.99667 * 10 7 6 37 37 H 1.08995 * 109.47289 * 39.06051 * 11 10 7 38 38 H 1.08994 * 109.46936 * 279.06115 * 11 10 7 39 39 H 0.97006 * 120.00315 * 185.00166 * 16 15 13 40 40 H 1.09003 * 117.49650 * 215.00279 * 21 12 11 41 41 H 1.08994 * 117.50331 * 0.02562 * 21 12 11 42 42 H 1.08999 * 117.49898 * 359.97171 * 22 12 11 43 43 H 1.08997 * 117.49971 * 144.97071 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4814 2.1810 -1.2181 5 6 2.0624 1.5706 -2.4951 6 6 1.5798 2.1462 1.2782 7 16 2.3606 1.3611 2.7152 8 8 3.7586 1.6155 2.7240 9 8 1.8538 0.0467 2.9019 10 7 1.7834 2.2103 4.0144 11 6 0.3560 2.1676 4.3418 12 6 0.1565 2.5647 5.8059 13 6 0.7378 1.6154 6.8217 14 1 1.7199 1.7986 7.2320 15 6 0.0136 0.5161 7.2317 16 7 -1.2176 0.3427 6.8030 17 14 0.7811 -0.7269 8.3959 18 1 2.1660 -0.3055 8.7270 19 1 -0.0250 -0.8024 9.6408 20 1 0.8125 -2.0612 7.7448 21 6 0.1750 4.0571 6.1419 22 6 -1.1444 3.2818 6.1724 23 1 -0.3633 0.5936 0.8389 24 1 -0.3634 0.4297 -0.9335 25 1 -0.3633 -1.0233 0.0946 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.1292 1.4428 -0.0430 29 1 0.3954 2.0884 -1.2325 30 1 1.7555 3.2344 -1.1616 31 1 1.7073 0.5456 -2.6021 32 1 1.7428 2.1575 -3.3562 33 1 3.1507 1.5739 -2.4369 34 1 0.4961 2.0683 1.3658 35 1 1.8666 3.1969 1.2379 36 1 2.3902 2.7360 4.5586 37 1 -0.0229 1.1578 4.1843 38 1 -0.1850 2.8628 3.6999 39 1 -1.7523 -0.3900 7.1470 40 1 0.6078 4.3525 7.0978 41 1 0.3289 4.7562 5.3199 42 1 -1.8579 3.4711 5.3705 43 1 -1.5800 3.0666 7.1482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429977802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:47 Heat of formation + Delta-G solvation = -71.880033 kcal Electronic energy + Delta-G solvation = -22374.366828 eV Core-core repulsion = 19160.849345 eV Total energy + Delta-G solvation = -3213.517483 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -37.92718 -37.08059 -36.58516 -35.46963 -33.28206 -31.88133 -31.43086 -29.79130 -25.97137 -24.94991 -24.83279 -23.56799 -21.14921 -19.56576 -19.25212 -18.67090 -17.23345 -16.45748 -16.25234 -15.66099 -15.39451 -14.89686 -14.59853 -14.23130 -13.89526 -13.51526 -13.24569 -13.10693 -13.01609 -12.32812 -12.23542 -12.14589 -11.98507 -11.91722 -11.63206 -11.53563 -11.36406 -11.23045 -10.92567 -10.89375 -10.77521 -10.70855 -10.56293 -10.46365 -10.22241 -10.02801 -9.51218 -9.12786 -8.58437 -8.42319 -8.14260 -6.01754 -4.08678 0.67375 3.25848 3.32495 3.42304 3.45040 4.11377 4.41704 4.43774 4.49536 4.66603 4.76553 5.09483 5.13867 5.25408 5.26779 5.30013 5.32268 5.43519 5.52683 5.59527 5.69855 5.78282 5.82165 5.88014 6.02711 6.03501 6.12450 6.21131 6.22886 6.27714 6.34061 6.40673 6.49129 6.69354 7.02669 7.07905 7.39250 7.56756 7.72352 7.89707 8.40305 8.91814 9.58067 11.06082 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.004892 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.194858 B = 5721.788860 C = 6003.341702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.154 4.154 3 C -0.074 4.074 4 C -0.114 4.114 5 C -0.155 4.155 6 C -0.637 4.637 7 S 2.606 3.394 8 O -0.975 6.975 9 O -0.946 6.946 10 N -1.098 6.098 11 C 0.157 3.843 12 C 0.034 3.966 13 C -0.492 4.492 14 H 0.060 0.940 15 C 0.073 3.927 16 N -0.878 5.878 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.281 1.281 21 C -0.212 4.212 22 C -0.145 4.145 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.415 0.585 37 H 0.082 0.918 38 H 0.031 0.969 39 H 0.260 0.740 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 4.265 -15.207 16.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.191 4.191 3 C -0.094 4.094 4 C -0.153 4.153 5 C -0.213 4.213 6 C -0.765 4.765 7 S 2.698 3.302 8 O -0.965 6.965 9 O -0.936 6.936 10 N -0.858 5.858 11 C 0.031 3.969 12 C 0.032 3.968 13 C -0.529 4.529 14 H 0.078 0.922 15 C -0.130 4.130 16 N -0.515 5.515 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.207 1.207 21 C -0.249 4.249 22 C -0.184 4.184 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.153 0.847 35 H 0.148 0.852 36 H 0.249 0.751 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.907 3.255 -15.324 15.933 hybrid contribution 0.000 0.126 0.662 0.674 sum 2.907 3.381 -14.662 15.325 Atomic orbital electron populations 1.21833 0.95127 1.02370 1.01637 1.22034 0.97656 0.95313 1.04134 1.20930 1.00560 0.95254 0.92671 1.21582 1.01191 0.99213 0.93267 1.21838 1.01102 1.01187 0.97152 1.30838 1.15062 1.13195 1.17355 1.05003 0.74229 0.75461 0.75496 1.93549 1.30100 1.86202 1.86638 1.93599 1.81083 1.35103 1.83806 1.55169 1.18050 1.68461 1.44118 1.20972 0.77665 1.01026 0.97227 1.18946 0.97752 0.88861 0.91265 1.20380 1.02626 1.06931 1.23007 0.92185 1.24945 0.94898 0.97270 0.95929 1.69971 1.07948 1.31126 1.42436 0.86601 0.79603 0.81855 0.80381 1.19678 1.21110 1.20738 1.23023 1.04313 0.96597 1.01013 1.22495 0.90112 1.04090 1.01681 0.92242 0.92633 0.92212 0.90747 0.89682 0.90079 0.91025 0.91842 0.92322 0.92761 0.92616 0.84710 0.85248 0.75107 0.89934 0.95092 0.93013 0.90372 0.91708 0.91909 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.18 37.16 0.34 -1.43 16 2 C -0.15 -1.85 5.19 -26.73 -0.14 -1.99 16 3 C -0.07 -0.84 2.15 -90.62 -0.19 -1.03 16 4 C -0.11 -1.05 5.15 -26.73 -0.14 -1.19 16 5 C -0.16 -1.25 9.55 37.16 0.35 -0.90 16 6 C -0.64 -7.74 5.35 37.16 0.20 -7.54 16 7 S 2.61 44.20 5.11 -107.50 -0.55 43.65 16 8 O -0.97 -18.56 18.08 -57.54 -1.04 -19.60 16 9 O -0.95 -19.38 15.14 -57.54 -0.87 -20.25 16 10 N -1.10 -20.09 5.77 -10.61 -0.06 -20.15 16 11 C 0.16 3.21 6.00 -4.03 -0.02 3.18 16 12 C 0.03 0.78 1.48 -155.66 -0.23 0.55 16 13 C -0.49 -13.07 8.75 -34.44 -0.30 -13.37 16 14 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 15 C 0.07 1.99 5.43 -17.82 -0.10 1.90 16 16 N -0.88 -24.47 12.66 55.43 0.70 -23.77 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 C -0.21 -4.29 9.96 -26.70 -0.27 -4.56 16 22 C -0.15 -3.21 9.15 -26.70 -0.24 -3.45 16 23 H 0.06 0.73 6.14 -51.93 -0.32 0.41 16 24 H 0.05 0.53 6.55 -51.93 -0.34 0.19 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.75 6.84 -51.93 -0.36 0.39 16 27 H 0.08 1.22 5.46 -51.93 -0.28 0.94 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.64 6.18 -51.93 -0.32 0.32 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.46 6.93 -51.93 -0.36 0.10 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.13 1.53 6.15 -51.92 -0.32 1.21 16 35 H 0.13 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.41 7.34 8.66 -34.46 -0.30 7.04 16 37 H 0.08 1.90 7.60 -51.93 -0.39 1.51 16 38 H 0.03 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 40 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 351.10 15.07 5.29 5.29 Total: -1.00 -31.58 351.10 -9.47 -41.05 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.18 Total: 7.09 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -0.74 Total: -29.84 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.64 Total: -43.92 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -1.91 Total: -39.85 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: 44.20 SS G_CDS: -0.55 Total: 43.65 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.58 -9.47 -41.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429977802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.827 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds