Wall clock time and date at job start Tue Mar 31 2020 06:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.46881 * 2 1 4 4 C 1.38550 * 119.84995 * 90.00299 * 3 2 1 5 5 C 1.38047 * 120.39242 * 180.02562 * 4 3 2 6 6 C 1.38713 * 120.08645 * 359.97438 * 5 4 3 7 7 O 1.35651 * 120.15353 * 179.97438 * 6 5 4 8 8 C 1.40135 * 119.69735 * 359.97438 * 6 5 4 9 9 C 1.47537 * 120.19295 * 180.02562 * 8 6 5 10 10 O 1.21586 * 119.99697 * 5.25279 * 9 8 6 11 11 N 1.34776 * 120.00103 * 185.24713 * 9 8 6 12 12 C 1.46493 * 120.00134 * 185.08013 * 11 9 8 13 13 C 1.53006 * 109.47479 * 184.99627 * 12 11 9 14 14 C 1.50695 * 115.54781 * 54.21475 * 13 12 11 15 15 H 1.08002 * 119.99914 * 215.59606 * 14 13 12 16 16 C 1.37878 * 120.00035 * 35.32634 * 14 13 12 17 17 N 1.31515 * 120.00175 * 355.78495 * 16 14 13 18 18 Si 1.86798 * 120.00121 * 175.79164 * 16 14 13 19 19 H 1.48501 * 109.47181 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47148 * 119.99490 * 18 16 14 21 21 H 1.48493 * 109.47219 * 239.99691 * 18 16 14 22 22 C 1.52998 * 117.49924 * 199.89234 * 13 12 11 23 23 C 1.53003 * 117.49582 * 268.54980 * 13 12 11 24 24 C 1.37789 * 119.85097 * 270.25301 * 3 2 1 25 25 H 1.08995 * 109.47395 * 299.99820 * 1 2 3 26 26 H 1.08995 * 109.47078 * 60.00007 * 1 2 3 27 27 H 1.09002 * 109.47196 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47254 * 240.00081 * 2 1 3 29 29 H 1.09004 * 109.46884 * 120.00183 * 2 1 3 30 30 H 1.08010 * 119.80313 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.96350 * 179.97438 * 5 4 3 32 32 H 0.96693 * 114.00096 * 270.02262 * 7 6 5 33 33 H 0.97004 * 119.99765 * 5.07824 * 11 9 8 34 34 H 1.09001 * 109.47479 * 64.99176 * 12 11 9 35 35 H 1.09002 * 109.47102 * 304.99449 * 12 11 9 36 36 H 0.96992 * 120.00200 * 185.00166 * 17 16 14 37 37 H 1.08997 * 117.49621 * 215.00072 * 22 13 12 38 38 H 1.08998 * 117.49961 * 0.02562 * 22 13 12 39 39 H 1.08998 * 117.50122 * 359.97227 * 23 13 12 40 40 H 1.08995 * 117.49469 * 144.97187 * 23 13 12 41 41 H 1.07992 * 120.04393 * 0.02732 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0709 1.2017 5 6 2.7218 3.3726 1.2148 6 6 2.9573 4.0389 0.0212 7 8 3.4084 5.3182 0.0324 8 6 2.7270 3.3845 -1.1964 9 6 2.9743 4.0826 -2.4724 10 8 3.4688 5.1934 -2.4717 11 7 2.6523 3.4891 -3.6388 12 6 2.9988 4.1326 -4.9084 13 6 2.4162 3.3211 -6.0673 14 6 0.9353 3.0525 -5.9928 15 1 0.5382 2.1134 -6.3490 16 6 0.0879 4.0033 -5.4647 17 7 0.5795 5.1094 -4.9504 18 14 -1.7585 3.7204 -5.4795 19 1 -2.0532 2.4083 -6.1096 20 1 -2.2715 3.7270 -4.0858 21 1 -2.4187 4.8009 -6.2551 22 6 3.0273 3.5311 -7.4541 23 6 3.3008 2.2363 -6.6850 24 6 2.2559 2.0692 -1.1951 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0800 1.5566 2.1338 31 1 2.8983 3.8729 2.1555 32 1 2.7061 5.9828 0.0357 33 1 2.1912 2.6356 -3.6376 34 1 4.0832 4.1806 -5.0074 35 1 2.5871 5.1417 -4.9284 36 1 -0.0093 5.7448 -4.5141 37 1 2.3581 3.4750 -8.3127 38 1 3.8446 4.2470 -7.5409 39 1 4.2980 2.1010 -6.2660 40 1 2.8116 1.3282 -7.0371 41 1 2.0711 1.5600 -2.1293 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435961785.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:32 Heat of formation + Delta-G solvation = -37.095343 kcal Electronic energy + Delta-G solvation = -23261.877075 eV Core-core repulsion = 19914.424018 eV Total energy + Delta-G solvation = -3347.453057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.04049 -38.09297 -36.95980 -36.47490 -33.35823 -32.97437 -32.20009 -30.95876 -28.52792 -26.12102 -25.37185 -23.61152 -23.31884 -21.32302 -21.10283 -19.41093 -19.21469 -18.17538 -16.92079 -16.24500 -15.77769 -15.29998 -14.84647 -14.56904 -14.49246 -14.07765 -13.82454 -13.77436 -13.48549 -13.37511 -12.89149 -12.45236 -12.16859 -12.02701 -11.78439 -11.56038 -11.35349 -11.11942 -11.10134 -10.98186 -10.71077 -10.53230 -10.39997 -10.25335 -9.71331 -9.06557 -8.87454 -8.86171 -8.83640 -8.34288 -8.29276 -7.76028 -5.99840 -4.20812 1.08332 1.36328 3.18528 3.29066 3.31126 3.36417 4.10260 4.20629 4.28547 4.49095 4.73841 4.82753 4.93233 5.10106 5.17633 5.34149 5.45574 5.47723 5.53755 5.62587 5.82805 5.89376 5.97133 5.99963 6.05439 6.19370 6.28163 6.30206 6.50304 6.53390 6.60519 6.61644 6.72185 6.86312 6.89745 7.11153 7.25055 7.58090 7.69062 7.96259 7.97932 8.29943 8.61620 8.82293 9.25359 9.42769 10.88487 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.005862 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.775060 B = 4775.341324 C = 5431.733868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.104 4.104 4 C -0.088 4.088 5 C -0.157 4.157 6 C 0.155 3.845 7 O -0.478 6.478 8 C -0.144 4.144 9 C 0.545 3.455 10 O -0.541 6.541 11 N -0.676 5.676 12 C 0.165 3.835 13 C 0.035 3.965 14 C -0.497 4.497 15 H 0.061 0.939 16 C 0.074 3.926 17 N -0.864 5.864 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.198 4.198 23 C -0.213 4.213 24 C -0.070 4.070 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.130 0.870 32 H 0.392 0.608 33 H 0.395 0.605 34 H 0.018 0.982 35 H 0.118 0.882 36 H 0.262 0.738 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.517 -7.456 11.403 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.106 4.106 5 C -0.176 4.176 6 C 0.109 3.891 7 O -0.288 6.288 8 C -0.148 4.148 9 C 0.330 3.670 10 O -0.420 6.420 11 N -0.324 5.324 12 C 0.042 3.958 13 C 0.034 3.966 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.130 4.130 17 N -0.500 5.500 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.237 4.237 23 C -0.250 4.250 24 C -0.089 4.089 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.142 0.858 31 H 0.148 0.852 32 H 0.249 0.751 33 H 0.229 0.771 34 H 0.036 0.964 35 H 0.136 0.864 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.362 -6.702 11.384 13.281 hybrid contribution -1.687 -0.297 -0.103 1.716 sum -0.325 -6.999 11.281 13.280 Atomic orbital electron populations 1.21778 0.94722 1.01652 1.02507 1.20517 0.96222 0.92297 1.02877 1.19801 1.01012 0.96759 0.92806 1.20953 0.98069 0.94052 0.97548 1.21350 1.02629 0.96034 0.97589 1.18498 0.93691 0.86226 0.90711 1.84729 1.35416 1.12599 1.96061 1.20754 1.03699 0.95676 0.94631 1.17852 0.80086 0.85737 0.83343 1.90731 1.45292 1.18725 1.87288 1.45538 1.57409 1.24031 1.05383 1.21078 0.93809 1.00596 0.80315 1.19261 0.93289 0.94545 0.89481 1.20524 0.88909 1.01743 1.42275 0.92078 1.25006 0.98701 0.94680 0.94644 1.69875 1.34577 1.09687 1.35824 0.86541 0.85446 0.78332 0.77768 1.19725 1.20973 1.20860 1.22935 1.03123 0.98773 0.98864 1.22957 1.00296 0.93310 1.08446 1.21232 0.96068 0.93248 0.98307 0.92718 0.92083 0.92472 0.90742 0.91159 0.85758 0.85243 0.75081 0.77060 0.96437 0.86445 0.92757 0.90222 0.91447 0.91344 0.90626 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.89 37.16 0.37 -1.10 16 2 C -0.08 -0.82 6.05 -27.88 -0.17 -0.99 16 3 C -0.10 -1.31 5.13 -104.67 -0.54 -1.85 16 4 C -0.09 -1.03 9.68 -39.54 -0.38 -1.42 16 5 C -0.16 -2.07 9.98 -39.48 -0.39 -2.46 16 6 C 0.16 2.57 6.72 -38.69 -0.26 2.31 16 7 O -0.48 -8.12 11.59 -40.47 -0.47 -8.59 16 8 C -0.14 -2.61 5.89 -104.84 -0.62 -3.23 16 9 C 0.54 11.97 7.75 -12.47 -0.10 11.87 16 10 O -0.54 -13.56 15.16 -16.52 -0.25 -13.81 16 11 N -0.68 -14.82 4.96 -61.35 -0.30 -15.12 16 12 C 0.16 3.95 4.62 -4.04 -0.02 3.93 16 13 C 0.03 0.82 2.04 -155.66 -0.32 0.50 16 14 C -0.50 -12.51 8.43 -34.44 -0.29 -12.80 16 15 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.07 1.89 5.31 -17.82 -0.09 1.80 16 17 N -0.86 -22.98 10.11 55.43 0.56 -22.42 16 18 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.20 -4.33 9.96 -26.70 -0.27 -4.59 16 23 C -0.21 -4.40 9.92 -26.69 -0.26 -4.67 16 24 C -0.07 -1.07 9.16 -39.19 -0.36 -1.43 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 32 H 0.39 5.28 9.06 45.56 0.41 5.69 16 33 H 0.39 8.12 6.21 -40.82 -0.25 7.86 16 34 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.12 3.21 5.89 -51.93 -0.31 2.91 16 36 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.13 1.93 6.47 -52.49 -0.34 1.59 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -29.99 344.34 -9.09 -39.08 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.10 Total: 14.81 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -3.70 Total: -14.13 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.26 Total: -37.54 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.72 Total: -22.40 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.99 -9.09 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435961785.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.987 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds