Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47009 * 2 1 4 4 N 1.46507 * 110.01697 * 56.54037 * 3 2 1 5 5 S 1.65596 * 119.99753 * 53.50024 * 4 3 2 6 6 O 1.42102 * 104.27383 * 177.03238 * 5 4 3 7 7 O 1.42099 * 104.27900 * 304.89005 * 5 4 3 8 8 C 1.81400 * 104.45250 * 60.96505 * 5 4 3 9 9 C 1.52991 * 109.47528 * 174.01147 * 8 5 4 10 10 C 1.52997 * 109.47478 * 179.97438 * 9 8 5 11 11 C 1.50703 * 109.47365 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99828 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99850 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00216 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99756 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47266 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47409 * 119.99893 * 15 13 11 18 18 H 1.48500 * 109.47080 * 239.99668 * 15 13 11 19 19 C 1.54266 * 110.03362 * 295.09809 * 3 2 1 20 20 C 1.54888 * 104.19802 * 217.10524 * 19 3 2 21 21 C 1.54891 * 102.74954 * 37.93811 * 20 19 3 22 22 C 1.53876 * 110.03328 * 177.93047 * 3 2 1 23 23 H 1.08998 * 109.46558 * 176.11428 * 1 2 3 24 24 H 1.08995 * 109.47166 * 56.11904 * 1 2 3 25 25 H 1.08999 * 109.46851 * 296.11524 * 1 2 3 26 26 H 1.09002 * 109.47149 * 119.99773 * 2 1 3 27 27 H 1.08999 * 109.47520 * 240.00213 * 2 1 3 28 28 H 0.97002 * 119.99542 * 233.50027 * 4 3 2 29 29 H 1.09005 * 109.46852 * 294.01552 * 8 5 4 30 30 H 1.09004 * 109.46997 * 54.00802 * 8 5 4 31 31 H 1.09005 * 109.47384 * 300.00078 * 9 8 5 32 32 H 1.09006 * 109.46970 * 59.99371 * 9 8 5 33 33 H 1.09003 * 109.46826 * 299.99627 * 10 9 8 34 34 H 1.08994 * 109.47121 * 59.99604 * 10 9 8 35 35 H 0.96996 * 119.99814 * 180.02562 * 14 13 11 36 36 H 1.08995 * 110.48234 * 335.78238 * 19 3 2 37 37 H 1.09000 * 110.48477 * 98.42905 * 19 3 2 38 38 H 1.09003 * 110.75528 * 279.63128 * 20 19 3 39 39 H 1.08994 * 110.75837 * 156.25751 * 20 19 3 40 40 H 1.08991 * 110.49001 * 203.37845 * 21 20 19 41 41 H 1.08999 * 110.48090 * 80.73608 * 21 20 19 42 42 H 1.09004 * 110.03143 * 238.57059 * 22 3 2 43 43 H 1.08994 * 110.03239 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4916 2.1683 1.1484 5 16 1.6695 1.5558 2.6767 6 8 1.0889 2.5420 3.5191 7 8 1.1221 0.2470 2.5956 8 6 3.4644 1.4807 2.9281 9 6 3.7604 1.0665 4.3709 10 6 5.2743 1.0025 4.5828 11 6 5.5659 0.5940 6.0038 12 1 4.7527 0.3999 6.6875 13 6 6.8707 0.4691 6.4312 14 7 7.8609 0.7060 5.5987 15 14 7.2321 -0.0366 8.1927 16 1 5.9543 -0.2424 8.9207 17 1 8.0126 -1.3000 8.1949 18 1 8.0168 1.0311 8.8632 19 6 1.6365 2.1456 -1.3125 20 6 2.8497 3.0481 -1.6484 21 6 4.0551 2.1700 -1.2303 22 6 3.5778 1.4579 0.0522 23 1 -0.3632 -1.0253 -0.0696 24 1 -0.3633 0.5729 -0.8531 25 1 -0.3633 0.4524 0.9228 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.0243 3.0075 1.0135 29 1 3.8968 0.7501 2.2444 30 1 3.8997 2.4611 2.7349 31 1 3.3281 1.7971 5.0546 32 1 3.3250 0.0861 4.5640 33 1 5.7063 0.2716 3.8991 34 1 5.7100 1.9827 4.3894 35 1 8.7789 0.6177 5.8994 36 1 1.4752 1.4134 -2.1035 37 1 0.7418 2.7497 -1.1621 38 1 2.8206 3.9677 -1.0639 39 1 2.8837 3.2682 -2.7154 40 1 4.9254 2.7916 -1.0202 41 1 4.2844 1.4416 -2.0082 42 1 3.9160 2.0061 0.9315 43 1 3.9608 0.4378 0.0771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451745982.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -98.302877 kcal Electronic energy + Delta-G solvation = -22452.324949 eV Core-core repulsion = 19237.661686 eV Total energy + Delta-G solvation = -3214.663263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.61327 -36.84590 -35.73436 -34.73420 -33.88709 -32.24630 -31.67346 -29.29840 -27.69935 -26.96920 -23.77957 -22.88861 -21.18024 -20.56158 -19.83498 -18.94279 -17.39871 -16.65959 -16.37165 -15.80425 -15.53382 -15.21552 -14.55492 -14.49385 -14.26105 -14.10933 -13.39303 -13.12822 -12.76121 -12.42633 -12.21496 -12.05664 -11.95713 -11.80086 -11.67401 -11.54265 -11.29639 -11.27026 -11.19788 -11.09645 -10.94664 -10.92360 -10.83941 -10.54804 -10.34883 -10.24073 -9.94714 -9.60359 -9.30298 -9.06352 -8.41162 -6.05964 -4.08790 0.52468 2.89334 3.29260 3.36879 3.41892 3.94255 4.21717 4.35060 4.42702 4.48986 4.59969 4.91102 5.05375 5.13042 5.16983 5.26175 5.27684 5.30942 5.37983 5.44363 5.45803 5.58850 5.68783 5.71285 5.76947 5.87522 5.92295 6.00980 6.05478 6.14327 6.20635 6.26951 6.31600 6.45170 6.48334 6.87563 7.01843 7.57155 7.67040 7.92342 8.33033 8.97720 9.56069 11.05300 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.004207 C = 0.003838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.522844 B = 6654.406446 C = 7294.412174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.144 4.144 3 C 0.177 3.823 4 N -1.111 6.111 5 S 2.597 3.403 6 O -0.968 6.968 7 O -0.955 6.955 8 C -0.616 4.616 9 C -0.105 4.105 10 C 0.031 3.969 11 C -0.525 4.525 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C -0.115 4.115 20 C -0.127 4.127 21 C -0.119 4.119 22 C -0.168 4.168 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.413 0.587 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.288 3.155 -17.217 20.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.183 4.183 3 C 0.088 3.912 4 N -0.869 5.869 5 S 2.693 3.307 6 O -0.958 6.958 7 O -0.945 6.945 8 C -0.747 4.747 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.564 4.564 12 H 0.077 0.923 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.210 1.210 19 C -0.154 4.154 20 C -0.165 4.165 21 C -0.157 4.157 22 C -0.207 4.207 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.109 0.891 27 H 0.089 0.911 28 H 0.247 0.753 29 H 0.151 0.849 30 H 0.147 0.853 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.757 2.740 -16.627 20.547 hybrid contribution 0.881 0.245 0.596 1.092 sum -10.876 2.985 -16.031 19.601 Atomic orbital electron populations 1.21664 0.95111 1.01351 1.01627 1.22301 0.97632 0.94449 1.03911 1.20857 0.92136 0.91899 0.86292 1.55797 1.71910 1.36197 1.22975 1.05346 0.78440 0.74462 0.72412 1.93569 1.76008 1.60660 1.65575 1.93570 1.75970 1.39859 1.85122 1.30887 1.23942 1.10923 1.08937 1.21505 1.03803 1.00726 0.88438 1.19059 0.86957 0.97634 0.97094 1.21296 0.92136 1.46389 0.96532 0.92340 1.25012 0.96338 0.95324 0.97673 1.69966 0.99027 1.49455 1.34993 0.86511 0.78425 0.78203 0.84758 1.19595 1.20940 1.20951 1.22619 0.98360 0.98718 0.95717 1.22542 0.94627 0.98364 1.00943 1.22293 0.97988 0.98600 0.96814 1.23331 0.94446 1.02497 1.00403 0.93013 0.93623 0.91930 0.89059 0.91070 0.75277 0.84937 0.85287 0.91570 0.91748 0.96123 0.96156 0.92973 0.90255 0.90916 0.91269 0.91480 0.91239 0.91433 0.89407 0.90098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.13 37.16 0.34 -1.21 16 2 C -0.14 -1.57 4.01 -26.73 -0.11 -1.68 16 3 C 0.18 1.74 0.71 -130.70 -0.09 1.65 16 4 N -1.11 -12.09 4.67 1.44 0.01 -12.08 16 5 S 2.60 38.28 5.30 -107.50 -0.57 37.71 16 6 O -0.97 -17.40 18.08 -57.54 -1.04 -18.44 16 7 O -0.96 -15.87 13.07 -57.54 -0.75 -16.62 16 8 C -0.62 -9.51 4.11 37.15 0.15 -9.36 16 9 C -0.11 -2.14 5.16 -26.74 -0.14 -2.28 16 10 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 11 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 19 C -0.12 -0.89 4.95 -25.07 -0.12 -1.02 16 20 C -0.13 -0.94 6.91 -24.74 -0.17 -1.12 16 21 C -0.12 -1.00 6.83 -25.07 -0.17 -1.18 16 22 C -0.17 -1.68 4.55 -25.61 -0.12 -1.79 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.41 7.28 -51.93 -0.38 0.04 16 25 H 0.06 0.80 6.17 -51.93 -0.32 0.48 16 26 H 0.09 1.17 5.96 -51.93 -0.31 0.86 16 27 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 28 H 0.41 3.74 8.38 -34.47 -0.29 3.45 16 29 H 0.13 1.85 6.19 -51.92 -0.32 1.53 16 30 H 0.13 1.79 7.40 -51.92 -0.38 1.40 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 36 H 0.08 0.56 7.81 -51.93 -0.41 0.15 16 37 H 0.07 0.52 7.78 -51.93 -0.40 0.11 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.93 4.52 -51.93 -0.23 0.70 16 43 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 LS Contribution 337.62 15.07 5.09 5.09 Total: -1.00 -33.52 337.62 -9.73 -43.25 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.20 Total: 1.18 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: -0.98 Total: -30.89 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.74 Total: -37.85 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.79 Total: -35.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 38.28 SS G_CDS: -0.57 Total: 37.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.52 -9.73 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451745982.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.049 kcal (2) G-P(sol) polarization free energy of solvation -33.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds