Wall clock time and date at job start Tue Mar 31 2020 07:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99943 * 2 1 4 4 C 1.52998 * 109.47126 * 124.99440 * 3 2 1 5 5 C 1.53003 * 109.47124 * 179.97438 * 4 3 2 6 6 H 1.08991 * 109.47240 * 55.00079 * 5 4 3 7 7 C 1.53000 * 109.47066 * 175.00277 * 5 4 3 8 8 O 1.42904 * 109.47089 * 54.99983 * 7 5 4 9 9 N 1.46504 * 109.47071 * 295.00351 * 5 4 3 10 10 C 1.34775 * 119.99792 * 155.00129 * 9 5 4 11 11 O 1.21579 * 120.00057 * 359.97438 * 10 9 5 12 12 C 1.47642 * 119.99552 * 179.97438 * 10 9 5 13 13 C 1.40011 * 119.89387 * 179.97438 * 12 10 9 14 14 C 1.36319 * 120.11254 * 179.74664 * 13 12 10 15 15 C 1.40889 * 119.88721 * 0.25206 * 14 13 12 16 16 C 1.41113 * 120.10619 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00340 * 204.64066 * 16 15 14 18 18 C 1.40225 * 119.99501 * 24.64295 * 16 15 14 19 19 N 1.30650 * 120.00211 * 17.87474 * 18 16 15 20 20 Si 1.86794 * 120.00050 * 197.87472 * 18 16 15 21 21 H 1.48504 * 109.47040 * 89.99629 * 20 18 16 22 22 H 1.48498 * 109.47531 * 210.00170 * 20 18 16 23 23 H 1.48505 * 109.47310 * 330.00337 * 20 18 16 24 24 C 1.40889 * 119.79488 * 0.02562 * 15 14 13 25 25 C 1.36320 * 119.88880 * 0.02562 * 24 15 14 26 26 H 1.08003 * 120.00154 * 0.02562 * 1 2 3 27 27 H 1.08006 * 119.99874 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.00154 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.47118 * 4.99704 * 3 2 1 30 30 H 1.09003 * 109.47200 * 244.99702 * 3 2 1 31 31 H 1.09007 * 109.46906 * 60.00135 * 4 3 2 32 32 H 1.08994 * 109.47812 * 299.99977 * 4 3 2 33 33 H 1.08998 * 109.47114 * 175.00122 * 7 5 4 34 34 H 1.09000 * 109.47490 * 294.99912 * 7 5 4 35 35 H 0.96702 * 114.00003 * 179.97438 * 8 7 5 36 36 H 0.97004 * 119.99832 * 334.99555 * 9 5 4 37 37 H 1.08004 * 119.94932 * 0.02562 * 13 12 10 38 38 H 1.07992 * 120.06012 * 180.27807 * 14 13 12 39 39 H 0.97002 * 120.00128 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.05749 * 180.02562 * 24 15 14 41 41 H 1.08002 * 119.94398 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 6 3.8004 2.6579 1.1813 6 1 3.0924 3.4866 1.1810 7 6 4.6800 2.7391 2.4306 8 8 5.5284 1.5907 2.4912 9 7 4.6428 2.7349 -0.0149 10 6 5.0066 3.9358 -0.5067 11 8 4.6355 4.9552 0.0421 12 6 5.8560 4.0133 -1.7118 13 6 6.2323 5.2620 -2.2212 14 6 7.0206 5.3386 -3.3307 15 6 7.4524 4.1587 -3.9680 16 6 8.2691 4.2326 -5.1164 17 1 8.2796 3.4177 -5.8250 18 6 9.0669 5.3644 -5.3375 19 7 9.3329 6.1790 -4.3513 20 14 9.7496 5.7073 -7.0421 21 1 8.7866 6.5444 -7.8019 22 1 11.0433 6.4265 -6.9219 23 1 9.9617 4.4235 -7.7579 24 6 7.0664 2.9045 -3.4551 25 6 6.2770 2.8380 -2.3457 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6214 1.4026 -0.9314 31 1 3.7399 0.5066 1.0922 32 1 2.4772 1.2357 2.1130 33 1 5.2912 3.6405 2.3867 34 1 4.0483 2.7713 3.3183 35 1 6.1155 1.5755 3.2595 36 1 4.9386 1.9215 -0.4528 37 1 5.9011 6.1660 -1.7318 38 1 7.3141 6.3022 -3.7202 39 1 9.8851 6.9617 -4.5042 40 1 7.3953 1.9973 -3.9400 41 1 5.9808 1.8771 -1.9516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456772483.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:33 Heat of formation + Delta-G solvation = -68.676846 kcal Electronic energy + Delta-G solvation = -22215.357759 eV Core-core repulsion = 18866.535225 eV Total energy + Delta-G solvation = -3348.822534 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.42338 -37.64942 -36.70437 -35.79779 -33.92721 -33.83946 -31.15748 -29.95608 -29.34893 -28.01179 -25.79973 -23.74564 -22.20738 -21.14269 -20.32555 -19.84964 -19.61878 -17.55143 -17.37717 -16.77409 -15.92913 -15.41062 -15.24434 -14.71605 -14.44220 -14.00688 -13.90851 -13.53178 -13.45521 -13.09873 -12.88215 -12.63616 -12.37925 -12.19546 -11.84801 -11.63354 -11.44717 -11.34742 -11.22272 -10.95449 -10.87230 -10.75198 -10.60896 -10.03296 -9.97561 -9.51482 -9.43484 -9.31875 -8.93862 -8.54185 -7.67275 -7.54093 -7.00044 -4.58144 2.17810 2.26255 2.93121 2.97342 2.99734 3.05937 3.75902 3.79826 3.88756 4.35730 4.58200 4.61580 4.94014 5.05054 5.17631 5.27950 5.39484 5.52531 5.60709 5.63731 5.72779 5.82230 5.90757 5.96550 6.04895 6.16905 6.28780 6.33282 6.52659 6.67745 6.82581 6.86326 7.01995 7.09632 7.13795 7.46363 7.63075 7.64781 7.82081 7.90550 8.08061 8.30589 8.45525 8.65388 8.78032 9.11181 9.91899 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022357 B = 0.003314 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.079653 B = 8446.818805 C = 9044.823060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.098 4.098 4 C -0.114 4.114 5 C 0.151 3.849 6 H 0.095 0.905 7 C 0.063 3.937 8 O -0.567 6.567 9 N -0.728 5.728 10 C 0.572 3.428 11 O -0.578 6.578 12 C -0.282 4.282 13 C -0.036 4.036 14 C -0.183 4.183 15 C 0.128 3.872 16 C -0.444 4.444 17 H 0.084 0.916 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.914 3.086 21 H -0.264 1.264 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.235 4.235 25 C -0.048 4.048 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.374 0.626 36 H 0.398 0.602 37 H 0.099 0.901 38 H 0.120 0.880 39 H 0.287 0.713 40 H 0.097 0.903 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.280 -8.168 7.982 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.152 4.152 5 C 0.045 3.955 6 H 0.113 0.887 7 C -0.016 4.016 8 O -0.372 6.372 9 N -0.381 5.381 10 C 0.367 3.633 11 O -0.460 6.460 12 C -0.287 4.287 13 C -0.056 4.056 14 C -0.202 4.202 15 C 0.125 3.875 16 C -0.472 4.472 17 H 0.102 0.898 18 C -0.148 4.148 19 N -0.393 5.393 20 Si 0.737 3.263 21 H -0.189 1.189 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.255 4.255 25 C -0.067 4.067 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.221 0.779 36 H 0.234 0.766 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.098 0.902 40 H 0.115 0.885 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.724 -7.377 7.886 13.882 hybrid contribution 0.860 -0.069 -0.293 0.912 sum -7.864 -7.446 7.593 13.226 Atomic orbital electron populations 1.23826 0.96011 1.01624 1.02499 1.23013 0.95996 0.98645 0.98745 1.20824 0.98205 0.95076 0.99462 1.21690 0.97655 0.97428 0.98437 1.20919 0.91632 0.98564 0.84370 0.88708 1.22682 0.93014 0.88460 0.97432 1.86470 1.55767 1.44423 1.50557 1.45884 1.53880 1.09069 1.29260 1.18612 0.78795 0.82156 0.83771 1.90621 1.57966 1.34976 1.62467 1.18913 1.13619 0.94584 1.01580 1.20478 0.94972 0.95207 0.94931 1.21012 1.01733 0.98989 0.98495 1.17782 0.88047 0.91008 0.90642 1.19841 1.19438 1.02192 1.05726 0.89757 1.26103 0.95046 0.94845 0.98773 1.69754 1.26426 1.10839 1.32274 0.86211 0.78602 0.79790 0.81656 1.18928 1.20034 1.18317 1.20670 1.07761 0.96892 1.00158 1.20371 0.96037 0.95049 0.95231 0.88693 0.88777 0.87466 0.91524 0.90363 0.90471 0.90978 0.92899 0.93507 0.77950 0.76638 0.88256 0.86194 0.90196 0.88531 0.89258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.87 14.32 29.01 0.42 -1.46 16 2 C -0.15 -1.45 9.52 -36.03 -0.34 -1.80 16 3 C -0.10 -1.09 5.54 -27.88 -0.15 -1.25 16 4 C -0.11 -1.27 4.45 -26.73 -0.12 -1.38 16 5 C 0.15 2.08 2.37 -67.93 -0.16 1.92 16 6 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 7 C 0.06 0.81 6.85 37.16 0.25 1.06 16 8 O -0.57 -6.91 12.83 -35.23 -0.45 -7.37 16 9 N -0.73 -12.07 4.43 -54.81 -0.24 -12.31 16 10 C 0.57 12.11 7.73 -12.42 -0.10 12.01 16 11 O -0.58 -13.66 15.98 5.30 0.08 -13.58 16 12 C -0.28 -6.51 5.89 -104.73 -0.62 -7.12 16 13 C -0.04 -0.90 9.52 -39.61 -0.38 -1.28 16 14 C -0.18 -4.72 8.64 -39.27 -0.34 -5.06 16 15 C 0.13 3.30 5.58 -106.80 -0.60 2.70 16 16 C -0.44 -11.13 9.04 -37.75 -0.34 -11.48 16 17 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 18 C 0.07 1.75 5.14 -17.31 -0.09 1.66 16 19 N -0.77 -18.98 10.95 55.56 0.61 -18.37 16 20 Si 0.91 17.52 29.60 -169.99 -5.03 12.49 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 C -0.24 -5.50 9.73 -39.27 -0.38 -5.89 16 25 C -0.05 -1.03 9.47 -39.61 -0.38 -1.41 16 26 H 0.09 0.85 7.84 -52.48 -0.41 0.44 16 27 H 0.09 0.74 8.06 -52.48 -0.42 0.32 16 28 H 0.11 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.07 0.75 7.79 -51.93 -0.40 0.35 16 30 H 0.08 0.97 7.75 -51.93 -0.40 0.56 16 31 H 0.08 0.88 7.73 -51.93 -0.40 0.48 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.37 2.99 9.12 45.56 0.42 3.41 16 36 H 0.40 6.14 6.60 -40.82 -0.27 5.87 16 37 H 0.10 2.42 7.63 -52.48 -0.40 2.02 16 38 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 39 H 0.29 6.37 8.29 -40.82 -0.34 6.03 16 40 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.09 1.61 6.37 -52.49 -0.33 1.28 16 LS Contribution 348.27 15.07 5.25 5.25 Total: -1.00 -29.28 348.27 -8.12 -37.39 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -5.01 Total: 15.25 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -3.32 Total: -18.76 kcal Atomic # 7 Polarization: -31.04 SS G_CDS: 0.37 Total: -30.68 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.37 Total: -20.94 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.28 -8.12 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456772483.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.286 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds