Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50701 * 109.47326 * 2 1 4 4 C 1.37726 * 119.95371 * 100.25413 * 3 2 1 5 5 C 1.39720 * 119.90657 * 180.25314 * 4 3 2 6 6 C 1.47600 * 120.08352 * 179.74674 * 5 4 3 7 7 O 1.21586 * 120.00397 * 4.88001 * 6 5 4 8 8 N 1.34781 * 119.99858 * 184.88384 * 6 5 4 9 9 C 1.46496 * 120.00205 * 185.07435 * 8 6 5 10 10 C 1.52999 * 109.47281 * 184.99623 * 9 8 6 11 11 C 1.50701 * 115.55182 * 54.23613 * 10 9 8 12 12 H 1.07998 * 120.00346 * 215.59512 * 11 10 9 13 13 C 1.37877 * 119.99659 * 35.32232 * 11 10 9 14 14 N 1.31520 * 120.00401 * 355.77953 * 13 11 10 15 15 Si 1.86804 * 120.00221 * 175.78328 * 13 11 10 16 16 H 1.48496 * 109.47119 * 59.99323 * 15 13 11 17 17 H 1.48493 * 109.47591 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46854 * 299.99887 * 15 13 11 19 19 C 1.52999 * 117.49858 * 199.90978 * 10 9 8 20 20 C 1.53001 * 117.49754 * 268.56939 * 10 9 8 21 21 C 1.39749 * 119.82511 * 359.47281 * 5 4 3 22 22 C 1.37682 * 119.91054 * 0.27471 * 21 5 4 23 23 C 1.38977 * 119.95748 * 280.00407 * 3 2 1 24 24 O 1.35712 * 119.90707 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.47233 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46904 * 299.99914 * 1 2 3 27 27 H 1.08993 * 109.47454 * 59.99718 * 1 2 3 28 28 H 1.08998 * 109.47082 * 239.99900 * 2 1 3 29 29 H 1.09001 * 109.47334 * 119.99920 * 2 1 3 30 30 H 1.08000 * 120.04742 * 0.02604 * 4 3 2 31 31 H 0.97001 * 119.99524 * 5.07749 * 8 6 5 32 32 H 1.08998 * 109.47476 * 64.99603 * 9 8 6 33 33 H 1.09005 * 109.47218 * 304.99486 * 9 8 6 34 34 H 0.96996 * 120.00335 * 185.00428 * 14 13 11 35 35 H 1.09004 * 117.49717 * 214.99755 * 19 10 9 36 36 H 1.08996 * 117.50215 * 0.02562 * 19 10 9 37 37 H 1.08999 * 117.50008 * 359.97438 * 20 10 9 38 38 H 1.09000 * 117.49706 * 144.97270 * 20 10 9 39 39 H 1.07997 * 120.04285 * 180.28892 * 21 5 4 40 40 H 1.08001 * 119.95486 * 179.97438 * 22 21 5 41 41 H 0.96696 * 113.99843 * 270.02341 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4618 1.9983 1.1742 5 6 2.9225 3.3174 1.1741 6 6 3.3784 3.9420 2.4313 7 8 3.4376 3.2828 3.4512 8 7 3.7292 5.2433 2.4487 9 6 4.2866 5.8354 3.6672 10 6 4.4811 7.3389 3.4608 11 6 3.2585 8.0969 3.0115 12 1 3.3584 8.9250 2.3256 13 6 2.0119 7.7294 3.4718 14 7 1.8798 6.6674 4.2364 15 14 0.5103 8.7399 3.0096 16 1 0.3579 8.7528 1.5325 17 1 -0.6996 8.1392 3.6263 18 1 0.6789 10.1307 3.5019 19 6 5.4559 8.0598 4.3940 20 6 5.8378 7.8098 2.9329 21 6 2.9557 4.0419 -0.0205 22 6 2.5294 3.4556 -1.1911 23 6 2.0665 2.1448 -1.1858 24 8 1.6476 1.5703 -2.3417 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4392 1.4336 2.0945 31 1 3.6126 5.7876 1.6544 32 1 5.2477 5.3719 3.8897 33 1 3.6016 5.6685 4.4985 34 1 0.9963 6.3668 4.5005 35 1 5.2130 9.0824 4.6830 36 1 5.9590 7.4630 5.1547 37 1 6.5919 7.0485 2.7331 38 1 5.8459 8.6675 2.2604 39 1 3.3154 5.0601 -0.0255 40 1 2.5544 4.0149 -2.1146 41 1 2.3465 1.1138 -2.8298 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487582421.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = -38.899557 kcal Electronic energy + Delta-G solvation = -22872.066868 eV Core-core repulsion = 19524.535575 eV Total energy + Delta-G solvation = -3347.531293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12543 -38.60815 -36.82081 -36.17633 -34.17770 -32.98581 -32.17806 -30.17740 -29.21698 -26.07426 -25.34154 -23.97912 -22.78559 -21.53933 -21.24645 -19.44514 -19.22726 -18.31448 -17.24900 -16.29769 -15.80315 -15.48283 -14.85624 -14.72434 -14.42529 -14.16993 -13.78411 -13.69948 -13.62320 -13.15556 -12.91234 -12.61886 -12.28548 -11.96866 -11.82261 -11.62622 -11.54307 -11.35222 -11.06367 -11.01951 -10.75402 -10.53928 -10.33362 -10.25838 -9.74692 -9.15909 -8.96210 -8.86264 -8.80909 -8.49545 -8.30067 -7.82028 -5.99637 -4.20842 0.97742 1.40802 3.22439 3.24729 3.30846 3.31101 4.04291 4.10613 4.27271 4.31034 4.69732 4.84718 4.93743 5.12292 5.30537 5.35841 5.38305 5.45837 5.52239 5.59974 5.80044 5.86893 5.94609 5.99938 6.08495 6.22129 6.28237 6.35856 6.46777 6.52031 6.56184 6.59146 6.69347 6.79759 6.88018 7.08892 7.23879 7.55683 7.57156 7.64605 7.96694 8.29145 8.56153 8.81081 9.16968 9.43131 10.89017 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017395 B = 0.004561 C = 0.004244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.259626 B = 6137.846553 C = 6596.414714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.050 4.050 5 C -0.121 4.121 6 C 0.546 3.454 7 O -0.557 6.557 8 N -0.673 5.673 9 C 0.163 3.837 10 C 0.036 3.964 11 C -0.500 4.500 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.865 5.865 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.276 1.276 19 C -0.198 4.198 20 C -0.213 4.213 21 C -0.076 4.076 22 C -0.150 4.150 23 C 0.117 3.883 24 O -0.495 6.495 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.397 0.603 32 H 0.019 0.981 33 H 0.119 0.881 34 H 0.264 0.736 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.134 0.866 40 H 0.131 0.869 41 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -10.052 -11.114 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.121 4.121 4 C -0.069 4.069 5 C -0.125 4.125 6 C 0.331 3.669 7 O -0.438 6.438 8 N -0.319 5.319 9 C 0.040 3.960 10 C 0.035 3.965 11 C -0.538 4.538 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.500 5.500 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.201 1.201 19 C -0.237 4.237 20 C -0.250 4.250 21 C -0.095 4.095 22 C -0.169 4.169 23 C 0.073 3.927 24 O -0.305 6.305 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.155 0.845 31 H 0.231 0.769 32 H 0.037 0.963 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 0.463 -10.331 -10.045 14.417 hybrid contribution -0.398 0.854 -0.803 1.238 sum 0.065 -9.476 -10.848 14.405 Atomic orbital electron populations 1.21731 0.94597 1.01433 1.02569 1.20361 0.96441 0.91892 1.02431 1.20133 1.01803 0.97167 0.92969 1.21067 0.94519 0.93682 0.97594 1.20305 1.02731 0.95159 0.94268 1.17970 0.78576 0.82888 0.87424 1.90699 1.55538 1.63484 1.34080 1.45550 1.61439 1.08632 1.16327 1.21113 0.95544 0.90438 0.88859 1.19234 0.88200 0.91678 0.97341 1.20450 0.89625 1.15684 1.27993 0.92151 1.25002 0.98921 0.94938 0.94102 1.69837 1.23373 1.22631 1.34197 0.86641 0.82073 0.80579 0.78663 1.20211 1.21198 1.20123 1.22940 1.07579 1.01571 0.91620 1.22959 1.01995 1.02896 0.97155 1.21301 0.97044 0.99729 0.91389 1.21298 1.01196 0.95233 0.99140 1.18438 0.97167 0.91592 0.85547 1.84770 1.38422 1.73263 1.34035 0.92656 0.92572 0.92088 0.91248 0.91042 0.84465 0.76853 0.96311 0.86357 0.92523 0.90212 0.91448 0.91352 0.90620 0.84819 0.85096 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.15 0.37 -1.18 16 2 C -0.07 -0.79 5.72 -27.89 -0.16 -0.95 16 3 C -0.12 -1.59 5.14 -104.53 -0.54 -2.13 16 4 C -0.05 -0.79 9.20 -39.22 -0.36 -1.15 16 5 C -0.12 -2.13 5.87 -104.96 -0.62 -2.75 16 6 C 0.55 11.70 7.75 -12.44 -0.10 11.61 16 7 O -0.56 -13.70 16.33 5.29 0.09 -13.61 16 8 N -0.67 -14.51 4.96 -61.33 -0.30 -14.81 16 9 C 0.16 3.86 4.62 -4.04 -0.02 3.84 16 10 C 0.04 0.84 2.04 -155.66 -0.32 0.53 16 11 C -0.50 -12.60 8.44 -34.44 -0.29 -12.89 16 12 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 13 C 0.08 1.93 5.31 -17.82 -0.09 1.83 16 14 N -0.86 -23.22 10.11 55.43 0.56 -22.66 16 15 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C -0.20 -4.29 9.96 -26.69 -0.27 -4.56 16 20 C -0.21 -4.34 9.92 -26.69 -0.26 -4.61 16 21 C -0.08 -1.14 9.51 -39.22 -0.37 -1.51 16 22 C -0.15 -1.95 9.97 -39.50 -0.39 -2.34 16 23 C 0.12 1.48 6.68 -39.02 -0.26 1.22 16 24 O -0.49 -5.11 12.61 -18.84 -0.24 -5.35 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.69 8.04 -51.93 -0.42 0.27 16 28 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 29 H 0.07 0.72 7.99 -51.93 -0.42 0.30 16 30 H 0.14 2.21 7.62 -52.49 -0.40 1.81 16 31 H 0.40 8.01 6.20 -40.82 -0.25 7.76 16 32 H 0.02 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.12 3.21 5.89 -51.93 -0.31 2.91 16 34 H 0.26 7.03 8.32 -40.82 -0.34 6.70 16 35 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 36 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 37 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 39 H 0.13 1.88 6.47 -52.49 -0.34 1.54 16 40 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 41 H 0.39 2.13 9.06 45.56 0.41 2.54 16 LS Contribution 345.16 15.07 5.20 5.20 Total: -1.00 -29.79 345.16 -8.45 -38.24 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.05 Total: 12.77 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -3.68 Total: -15.04 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.26 Total: -37.47 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.15 Total: -18.96 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.79 -8.45 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487582421.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.661 kcal (2) G-P(sol) polarization free energy of solvation -29.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds